mRNA_M-pyrifera_M_contig103822.814.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103822.814.1
Unique NamemRNA_M-pyrifera_M_contig103822.814.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103822.814.1 vs. uniprot
Match: A0A7Y2IJ16_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IJ16_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 2.570e-9
Identity = 36/105 (34.29%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:   25 VLSSACGEDEFPPQVKQDAEIYEAALNHLVEVSGVELADNWVDPVVFVEVLDTTEVDLETQVAVIDEMDEAFAIRFVDDLGEAIDIELDDLPVREGTILIAFGPI 339
            VL +AC     P    +DA  Y A ++ L++ S ++  D    PV++VE      + L  QV ++    + + +RFVDD GEA+ ++L+  PVR  + LI  GPI
Sbjct:   25 VLVTACSSQPKPETTDRDASAYAAVIDALLQGSPLDQEDPDRLPVIYVEAFAQEGISLTVQVQLVTAYADTYQLRFVDDRGEALLVDLEKQPVRSSSALIGLGPI 129
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103822.814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Y2IJ16_9ACTN2.570e-934.29Uncharacterized protein n=1 Tax=Acidimicrobiales b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103822contigM-pyrifera_M_contig103822:124..477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size354
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.1897676-CDS-M-pyrifera_M_contig103822:123..4771622815544.1897676-CDS-M-pyrifera_M_contig103822:123..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103822 124..477 -
1692277456.9064167-CDS-M-pyrifera_M_contig103822:123..4771692277456.9064167-CDS-M-pyrifera_M_contig103822:123..477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103822 124..477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103822.814.1prot_M-pyrifera_M_contig103822.814.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103822 124..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103822.814.1

>prot_M-pyrifera_M_contig103822.814.1 ID=prot_M-pyrifera_M_contig103822.814.1|Name=mRNA_M-pyrifera_M_contig103822.814.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=118bp
LLAFALISVLSSACGEDEFPPQVKQDAEIYEAALNHLVEVSGVELADNWV
DPVVFVEVLDTTEVDLETQVAVIDEMDEAFAIRFVDDLGEAIDIELDDLP
VREGTILIAFGPIEVDGA
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mRNA from alignment at M-pyrifera_M_contig103822:124..477-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103822.814.1 ID=mRNA_M-pyrifera_M_contig103822.814.1|Name=mRNA_M-pyrifera_M_contig103822.814.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig103822:124..477- (Macrocystis pyrifera P11B4 male)
CTCCTCGCGTTCGCCCTGATCTCGGTGTTGTCGAGCGCCTGTGGTGAGGA
CGAGTTCCCGCCCCAGGTCAAACAGGACGCCGAGATCTACGAAGCAGCCC
TGAACCATCTGGTCGAGGTGTCGGGTGTCGAACTCGCCGACAACTGGGTC
GATCCGGTCGTGTTCGTCGAGGTTCTCGACACGACGGAGGTCGACCTCGA
GACCCAGGTCGCCGTCATCGACGAGATGGACGAAGCGTTCGCCATTCGAT
TCGTCGACGATCTCGGCGAAGCCATCGACATCGAGTTGGACGACCTCCCG
GTTCGAGAGGGGACGATCCTCATCGCCTTCGGGCCGATCGAGGTCGACGG
CGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103822:124..477-

>mRNA_M-pyrifera_M_contig103822.814.1 ID=mRNA_M-pyrifera_M_contig103822.814.1|Name=mRNA_M-pyrifera_M_contig103822.814.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=708bp|location=Sequence derived from alignment at M-pyrifera_M_contig103822:124..477- (Macrocystis pyrifera P11B4 male)
CTCCTCGCGTTCGCCCTGATCTCGGTGTTGTCGAGCGCCTGTGGTGAGGA
CGAGTTCCCGCCCCAGGTCAAACAGGACGCCGAGATCTACGAAGCAGCCC
TGAACCATCTGGTCGAGGTGTCGGGTGTCGAACTCGCCGACAACTGGGTC
GATCCGGTCGTGTTCGTCGAGGTTCTCGACACGACGGAGGTCGACCTCGA
GACCCAGGTCGCCGTCATCGACGAGATGGACGAAGCGTTCGCCATTCGAT
TCGTCGACGATCTCGGCGAAGCCATCGACATCGAGTTGGACGACCTCCCG
GTTCGAGAGGGGACGATCCTCATCGCCTTCGGGCCGATCGAGGTCGACGG
CGCCCTCCTCGCGTTCGCCCTGATCTCGGTGTTGTCGAGCGCCTGTGGTG
AGGACGAGTTCCCGCCCCAGGTCAAACAGGACGCCGAGATCTACGAAGCA
GCCCTGAACCATCTGGTCGAGGTGTCGGGTGTCGAACTCGCCGACAACTG
GGTCGATCCGGTCGTGTTCGTCGAGGTTCTCGACACGACGGAGGTCGACC
TCGAGACCCAGGTCGCCGTCATCGACGAGATGGACGAAGCGTTCGCCATT
CGATTCGTCGACGATCTCGGCGAAGCCATCGACATCGAGTTGGACGACCT
CCCGGTTCGAGAGGGGACGATCCTCATCGCCTTCGGGCCGATCGAGGTCG
ACGGCGCC
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