mRNA_M-pyrifera_M_contig103752.804.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103752.804.1
Unique NamemRNA_M-pyrifera_M_contig103752.804.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103752.804.1 vs. uniprot
Match: A0A667ZST2_9TELE (Plakophilin 3 n=6 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667ZST2_9TELE)

HSP 1 Score: 55.5 bits (132), Expect = 9.310e-6
Identity = 29/66 (43.94%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  289 ARDEAR--KAIPSLLQLAQCDNPVLRAHAAGALLNLCIQNISNRVALRDAGGISVLVENVREGSDE 480
            A+DE R  K I  L++L  CDN  ++ +A GA  NL  +N+ N+VAL + GGI+ L+E ++E  DE
Sbjct:  381 AKDEVRRYKGISELVRLFNCDNQEVQRYATGATRNLIYENMDNKVALIEEGGIAQLIEALKENDDE 446
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BLAST of mRNA_M-pyrifera_M_contig103752.804.1 vs. uniprot
Match: A0A8J7NUX7_ATRSP (PKP3 protein (Fragment) n=1 Tax=Atractosteus spatula TaxID=7917 RepID=A0A8J7NUX7_ATRSP)

HSP 1 Score: 53.1 bits (126), Expect = 5.890e-5
Identity = 31/79 (39.24%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:  250 AAALRNVIAEHAGARDEAR--KAIPSLLQLAQCDNPVLRAHAAGALLNLCIQNISNRVALRDAGGISVLVENVREGSDE 480
            AA +++    ++ A+ +AR  KAIP+L++L   D+  ++ +A GA+ NL  +N+ N+ AL +AGGI  L+E +RE  DE
Sbjct:  437 AAYIQHECYHNSDAKTQARQLKAIPALVKLFNSDSQDVQRYATGAMRNLIYENLDNKSALIEAGGIPQLIEALREPDDE 515
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BLAST of mRNA_M-pyrifera_M_contig103752.804.1 vs. uniprot
Match: A0A484D2R6_PERFV (Uncharacterized protein n=19 Tax=Percidae TaxID=8165 RepID=A0A484D2R6_PERFV)

HSP 1 Score: 52.8 bits (125), Expect = 7.840e-5
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 1 
Query:  289 ARDEAR--KAIPSLLQLAQCDNPVLRAHAAGALLNLCIQNISNRVALRDAGGISVLVENVREGSDE 480
            A++E R  K I  L++L  CDN  ++ +A GA  NL  +N+ N+VAL + GGI  LVE ++E  DE
Sbjct:  408 AKNEVRRLKGIGELVRLFNCDNQEVQRYATGATRNLIYENMDNKVALIEEGGIPQLVEALKESDDE 473
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BLAST of mRNA_M-pyrifera_M_contig103752.804.1 vs. uniprot
Match: A0A556TLA6_BAGYA (Plakophilin-3 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556TLA6_BAGYA)

HSP 1 Score: 52.8 bits (125), Expect = 7.990e-5
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:  307 KAIPSLLQLAQCDNPVLRAHAAGALLNLCIQNISNRVALRDAGGISVLVENVREGSDEGRTDAALALQLLA 519
            KAIP+L+QL   +N  ++ +A GA  NL  +N+ N+ AL +AGGIS LV  ++E  DE R +    L  L+
Sbjct:  544 KAIPALVQLYSSENQEVQRYATGATRNLIYENMENKTALIEAGGISKLVSALKELDDELRKNVTGILWNLS 614
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103752.804.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A667ZST2_9TELE9.310e-643.94Plakophilin 3 n=6 Tax=Myripristis murdjan TaxID=58... [more]
A0A8J7NUX7_ATRSP5.890e-539.24PKP3 protein (Fragment) n=1 Tax=Atractosteus spatu... [more]
A0A484D2R6_PERFV7.840e-543.94Uncharacterized protein n=19 Tax=Percidae TaxID=81... [more]
A0A556TLA6_BAGYA7.990e-542.25Plakophilin-3 n=1 Tax=Bagarius yarrelli TaxID=1757... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103752contigM-pyrifera_M_contig103752:87..620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size510
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.766305-UTR-M-pyrifera_M_contig103752:86..1101622815543.766305-UTR-M-pyrifera_M_contig103752:86..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103752 87..110 +
1692277456.7607489-UTR-M-pyrifera_M_contig103752:86..1101692277456.7607489-UTR-M-pyrifera_M_contig103752:86..110Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig103752 87..110 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.7778966-CDS-M-pyrifera_M_contig103752:110..6201622815543.7778966-CDS-M-pyrifera_M_contig103752:110..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103752 111..620 +
1692277456.7696054-CDS-M-pyrifera_M_contig103752:110..6201692277456.7696054-CDS-M-pyrifera_M_contig103752:110..620Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103752 111..620 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103752.804.1prot_M-pyrifera_M_contig103752.804.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103752 111..620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103752.804.1

>prot_M-pyrifera_M_contig103752.804.1 ID=prot_M-pyrifera_M_contig103752.804.1|Name=mRNA_M-pyrifera_M_contig103752.804.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=170bp
MRATCGLKVPVARIQQILQALKKHEKSDHGPALAQVLWVLSRNTENCLSI
VAEGGVDILIQAVREELSLECRGTAAAALRNVIAEHAGARDEARKAIPSL
LQLAQCDNPVLRAHAAGALLNLCIQNISNRVALRDAGGISVLVENVREGS
DEGRTDAALALQLLAEDGRA
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mRNA from alignment at M-pyrifera_M_contig103752:87..620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103752.804.1 ID=mRNA_M-pyrifera_M_contig103752.804.1|Name=mRNA_M-pyrifera_M_contig103752.804.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=534bp|location=Sequence derived from alignment at M-pyrifera_M_contig103752:87..620+ (Macrocystis pyrifera P11B4 male)
GAAGATGCAAGAAGAGAAGAAACCATGCGTGCTACTTGTGGATTGAAGGT
GCCAGTTGCACGTATCCAACAAATCCTACAAGCGTTGAAGAAGCATGAAA
AGAGTGACCATGGGCCAGCTCTTGCCCAAGTGTTGTGGGTTTTGTCACGA
AATACGGAAAATTGCTTGTCCATTGTTGCGGAAGGTGGTGTAGATATTCT
AATCCAAGCAGTACGGGAAGAATTATCACTCGAATGTCGTGGTACTGCAG
CCGCAGCACTTCGCAATGTCATCGCAGAACATGCTGGTGCACGTGATGAG
GCAAGGAAAGCAATTCCTTCCTTATTACAACTTGCTCAATGTGACAATCC
AGTCTTGCGAGCACACGCTGCTGGAGCTTTACTCAACTTGTGCATTCAAA
ATATATCAAATCGTGTTGCTCTTCGTGATGCTGGAGGAATTTCTGTCCTT
GTGGAAAATGTTCGGGAAGGAAGTGATGAGGGCAGAACTGATGCTGCCCT
TGCACTGCAACTCCTAGCTGAAGATGGAAGAGCA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103752:87..620+

>mRNA_M-pyrifera_M_contig103752.804.1 ID=mRNA_M-pyrifera_M_contig103752.804.1|Name=mRNA_M-pyrifera_M_contig103752.804.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1020bp|location=Sequence derived from alignment at M-pyrifera_M_contig103752:87..620+ (Macrocystis pyrifera P11B4 male)
ATGCGTGCTACTTGTGGATTGAAGGTGCCAGTTGCACGTATCCAACAAAT
CCTACAAGCGTTGAAGAAGCATGAAAAGAGTGACCATGGGCCAGCTCTTG
CCCAAGTGTTGTGGGTTTTGTCACGAAATACGGAAAATTGCTTGTCCATT
GTTGCGGAAGGTGGTGTAGATATTCTAATCCAAGCAGTACGGGAAGAATT
ATCACTCGAATGTCGTGGTACTGCAGCCGCAGCACTTCGCAATGTCATCG
CAGAACATGCTGGTGCACGTGATGAGGCAAGGAAAGCAATTCCTTCCTTA
TTACAACTTGCTCAATGTGACAATCCAGTCTTGCGAGCACACGCTGCTGG
AGCTTTACTCAACTTGTGCATTCAAAATATATCAAATCGTGTTGCTCTTC
GTGATGCTGGAGGAATTTCTGTCCTTGTGGAAAATGTTCGGGAAGGAAGT
GATGAGGGCAGAACTGATGCTGCCCTTGCACTGCAACTCCTAGCTGAAGA
TGGAAGAGCAATGCGTGCTACTTGTGGATTGAAGGTGCCAGTTGCACGTA
TCCAACAAATCCTACAAGCGTTGAAGAAGCATGAAAAGAGTGACCATGGG
CCAGCTCTTGCCCAAGTGTTGTGGGTTTTGTCACGAAATACGGAAAATTG
CTTGTCCATTGTTGCGGAAGGTGGTGTAGATATTCTAATCCAAGCAGTAC
GGGAAGAATTATCACTCGAATGTCGTGGTACTGCAGCCGCAGCACTTCGC
AATGTCATCGCAGAACATGCTGGTGCACGTGATGAGGCAAGGAAAGCAAT
TCCTTCCTTATTACAACTTGCTCAATGTGACAATCCAGTCTTGCGAGCAC
ACGCTGCTGGAGCTTTACTCAACTTGTGCATTCAAAATATATCAAATCGT
GTTGCTCTTCGTGATGCTGGAGGAATTTCTGTCCTTGTGGAAAATGTTCG
GGAAGGAAGTGATGAGGGCAGAACTGATGCTGCCCTTGCACTGCAACTCC
TAGCTGAAGATGGAAGAGCA
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