mRNA_M-pyrifera_M_contig103730.796.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103730.796.1
Unique NamemRNA_M-pyrifera_M_contig103730.796.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A0D3CLT8_BRAOL (DYW_deaminase domain-containing protein n=7 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CLT8_BRAOL)

HSP 1 Score: 56.2 bits (134), Expect = 6.580e-6
Identity = 39/150 (26.00%), Postives = 75/150 (50.00%), Query Frame = 1 
Query:   16 VIRCPGRPSDRMVASLVSHLSSFGRLDEPAQLAAQV-------WAKYRSAADRHTLNRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESM 444
            V++C        + SL+S  S FGR+D+  +L  ++       W  +            V   +A  K   A+ L   M +  GV+P+SY+   ++ A V    +D A+ + +++ E+ +  +    ++L+  YAKGG++EKA+++ +SM
Sbjct:  136 VVKCGFNRDVGAMTSLLSLYSGFGRVDDARKLFDEMPERTIVSWTAF------------VSGCIASGKHGDAIGLFNKMVES-GVRPDSYSVVRVLSACVQVGDLDSAEWIANLVEEIEMHKNSYVYATLVNLYAKGGKMEKARSVFDSM 272
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BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A7C9F3W5_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F3W5_OPUST)

HSP 1 Score: 52.4 bits (124), Expect = 1.780e-5
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 1 
Query:  226 GMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMESV 453
            G+ +  G   ++   + ++H +V   R+  A KVLD +PE    P  +T S++IAGYA+ G V+ AK +++ MES+
Sbjct:    2 GLVEVSGHSSDNVVQSSLVHMYVRCGRLTVAHKVLDGIPE----PDVVTFSAMIAGYARIGDVDMAKRLLDEMESL 73
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BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A2P6P3H9_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P3H9_ROSCH)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-5
Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = 1 
Query:   73 LSSFGRLDEPAQLAAQVWAKYRSAADRHTL---NRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMESVWGV 462
            +S +GR    A  A QV+ +  S   + T+   N L+ A     KF+   ++++G++  YG  P++   N++I AF  +  +D+A+KV D M    +QPS +TL +L+       +V++A  + E  E V GV
Sbjct:   91 MSYYGRA-RLADRALQVFDEMPSFRCQRTIKSFNSLLNALFKCGKFEKMKKVLEGIED-YGT-PDACTYNILIKAFCGSEDLDNARKVFDEMRSNGLQPSDVTLGTLVHKLCSDSRVKEALELKEDWERVRGV 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0D3CLT8_BRAOL6.580e-626.00DYW_deaminase domain-containing protein n=7 Tax=Br... [more]
A0A7C9F3W5_OPUST1.780e-535.53Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A2P6P3H9_ROSCH4.930e-530.83Putative tetratricopeptide-like helical domain-con... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103730contigM-pyrifera_M_contig103730:41..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size573
Cds size573
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.4185598-CDS-M-pyrifera_M_contig103730:40..6131622815543.4185598-CDS-M-pyrifera_M_contig103730:40..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103730 41..613 -
1692277456.6380198-CDS-M-pyrifera_M_contig103730:40..6131692277456.6380198-CDS-M-pyrifera_M_contig103730:40..613Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103730 41..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103730.796.1prot_M-pyrifera_M_contig103730.796.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103730 41..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103730.796.1

>prot_M-pyrifera_M_contig103730.796.1 ID=prot_M-pyrifera_M_contig103730.796.1|Name=mRNA_M-pyrifera_M_contig103730.796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MAKEFVIRCPGRPSDRMVASLVSHLSSFGRLDEPAQLAAQVWAKYRSAAD
RHTLNRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTA
RRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMES
VWGVRPEIVTHNSIISALCQGNRVEEALRYLRTIKAPLGVR
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mRNA from alignment at M-pyrifera_M_contig103730:41..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103730.796.1 ID=mRNA_M-pyrifera_M_contig103730.796.1|Name=mRNA_M-pyrifera_M_contig103730.796.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=573bp|location=Sequence derived from alignment at M-pyrifera_M_contig103730:41..613- (Macrocystis pyrifera P11B4 male)
ATGGCCAAGGAGTTCGTCATCCGCTGCCCTGGGCGGCCCAGCGATCGGAT
GGTGGCCTCGCTGGTGTCGCACCTCTCCTCCTTCGGGAGGCTGGACGAAC
CGGCGCAGCTGGCGGCCCAGGTGTGGGCCAAGTACCGCTCTGCAGCCGAC
AGACACACACTGAACCGCCTGGTACAGGCCTACCTCGCCAAGGAGAAGTT
CGACCACGCCGTCCGCCTCGTGAAGGGCATGAAGCAGTTCTACGGCGTGC
AGCCGGAGTCGTACGCCTGCAACGTGATCATCCACGCCTTTGTGACGGCG
CGGCGTGTGGACGACGCACAGAAGGTGCTGGACATGATGCCAGAGCTGGC
CATCCAGCCATCCTGCATCACCCTCAGCAGCCTCATCGCCGGCTACGCGA
AGGGCGGCCAGGTGGAGAAGGCCAAGGCAATGATCGAAAGTATGGAGAGC
GTCTGGGGCGTGCGTCCCGAGATCGTCACACACAACAGCATCATCAGCGC
CCTCTGCCAGGGCAACAGGGTGGAGGAGGCGCTGCGGTACCTGCGCACCA
TCAAGGCGCCGCTGGGCGTGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103730:41..613-

>mRNA_M-pyrifera_M_contig103730.796.1 ID=mRNA_M-pyrifera_M_contig103730.796.1|Name=mRNA_M-pyrifera_M_contig103730.796.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1146bp|location=Sequence derived from alignment at M-pyrifera_M_contig103730:41..613- (Macrocystis pyrifera P11B4 male)
ATGGCCAAGGAGTTCGTCATCCGCTGCCCTGGGCGGCCCAGCGATCGGAT
GGTGGCCTCGCTGGTGTCGCACCTCTCCTCCTTCGGGAGGCTGGACGAAC
CGGCGCAGCTGGCGGCCCAGGTGTGGGCCAAGTACCGCTCTGCAGCCGAC
AGACACACACTGAACCGCCTGGTACAGGCCTACCTCGCCAAGGAGAAGTT
CGACCACGCCGTCCGCCTCGTGAAGGGCATGAAGCAGTTCTACGGCGTGC
AGCCGGAGTCGTACGCCTGCAACGTGATCATCCACGCCTTTGTGACGGCG
CGGCGTGTGGACGACGCACAGAAGGTGCTGGACATGATGCCAGAGCTGGC
CATCCAGCCATCCTGCATCACCCTCAGCAGCCTCATCGCCGGCTACGCGA
AGGGCGGCCAGGTGGAGAAGGCCAAGGCAATGATCGAAAGTATGGAGAGC
GTCTGGGGCGTGCGTCCCGAGATCGTCACACACAACAGCATCATCAGCGC
CCTCTGCCAGGGCAACAGGGTGGAGGAGGCGCTGCGGTACCTGCGCACCA
TCAAGGCGCCGCTGGGCGTGCGCATGGCCAAGGAGTTCGTCATCCGCTGC
CCTGGGCGGCCCAGCGATCGGATGGTGGCCTCGCTGGTGTCGCACCTCTC
CTCCTTCGGGAGGCTGGACGAACCGGCGCAGCTGGCGGCCCAGGTGTGGG
CCAAGTACCGCTCTGCAGCCGACAGACACACACTGAACCGCCTGGTACAG
GCCTACCTCGCCAAGGAGAAGTTCGACCACGCCGTCCGCCTCGTGAAGGG
CATGAAGCAGTTCTACGGCGTGCAGCCGGAGTCGTACGCCTGCAACGTGA
TCATCCACGCCTTTGTGACGGCGCGGCGTGTGGACGACGCACAGAAGGTG
CTGGACATGATGCCAGAGCTGGCCATCCAGCCATCCTGCATCACCCTCAG
CAGCCTCATCGCCGGCTACGCGAAGGGCGGCCAGGTGGAGAAGGCCAAGG
CAATGATCGAAAGTATGGAGAGCGTCTGGGGCGTGCGTCCCGAGATCGTC
ACACACAACAGCATCATCAGCGCCCTCTGCCAGGGCAACAGGGTGGAGGA
GGCGCTGCGGTACCTGCGCACCATCAAGGCGCCGCTGGGCGTGCGC
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