prot_M-pyrifera_M_contig103730.796.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig103730.796.1
Unique Nameprot_M-pyrifera_M_contig103730.796.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length191
Homology
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BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A0D3CLT8_BRAOL (DYW_deaminase domain-containing protein n=7 Tax=Brassiceae TaxID=981071 RepID=A0A0D3CLT8_BRAOL)

HSP 1 Score: 56.2 bits (134), Expect = 6.580e-6
Identity = 39/150 (26.00%), Postives = 75/150 (50.00%), Query Frame = 0 
Query:    6 VIRCPGRPSDRMVASLVSHLSSFGRLDEPAQLAAQV-------WAKYRSAADRHTLNRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESM 148
            V++C        + SL+S  S FGR+D+  +L  ++       W  +            V   +A  K   A+ L   M +  GV+P+SY+   ++ A V    +D A+ + +++ E+ +  +    ++L+  YAKGG++EKA+++ +SM
Sbjct:  136 VVKCGFNRDVGAMTSLLSLYSGFGRVDDARKLFDEMPERTIVSWTAF------------VSGCIASGKHGDAIGLFNKMVES-GVRPDSYSVVRVLSACVQVGDLDSAEWIANLVEEIEMHKNSYVYATLVNLYAKGGKMEKARSVFDSM 272
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BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A7C9F3W5_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9F3W5_OPUST)

HSP 1 Score: 52.4 bits (124), Expect = 1.780e-5
Identity = 27/76 (35.53%), Postives = 46/76 (60.53%), Query Frame = 0 
Query:   76 GMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMESV 151
            G+ +  G   ++   + ++H +V   R+  A KVLD +PE    P  +T S++IAGYA+ G V+ AK +++ MES+
Sbjct:    2 GLVEVSGHSSDNVVQSSLVHMYVRCGRLTVAHKVLDGIPE----PDVVTFSAMIAGYARIGDVDMAKRLLDEMESL 73
[Close]
BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Match: A0A2P6P3H9_ROSCH (Putative tetratricopeptide-like helical domain-containing protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P3H9_ROSCH)

HSP 1 Score: 53.5 bits (127), Expect = 4.930e-5
Identity = 41/133 (30.83%), Postives = 71/133 (53.38%), Query Frame = 0 
Query:   25 LSSFGRLDEPAQLAAQVWAKYRSAADRHTL---NRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTARRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMESVWGV 154
            +S +GR    A  A QV+ +  S   + T+   N L+ A     KF+   ++++G++  YG  P++   N++I AF  +  +D+A+KV D M    +QPS +TL +L+       +V++A  + E  E V GV
Sbjct:   91 MSYYGRA-RLADRALQVFDEMPSFRCQRTIKSFNSLLNALFKCGKFEKMKKVLEGIED-YGT-PDACTYNILIKAFCGSEDLDNARKVFDEMRSNGLQPSDVTLGTLVHKLCSDSRVKEALELKEDWERVRGV 220
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103730.796.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0D3CLT8_BRAOL6.580e-626.00DYW_deaminase domain-containing protein n=7 Tax=Br... [more]
A0A7C9F3W5_OPUST1.780e-535.53Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]
A0A2P6P3H9_ROSCH4.930e-530.83Putative tetratricopeptide-like helical domain-con... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 17..188
e-value: 2.4E-32
score: 114.7
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 153..181
e-value: 2.1E-7
score: 30.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 53..79
e-value: 0.41
score: 11.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 85..134
e-value: 9.1E-9
score: 35.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 88..121
e-value: 8.4E-4
score: 17.4
coord: 124..156
e-value: 1.2E-5
score: 23.2
coord: 159..182
e-value: 3.2E-5
score: 21.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 121..151
score: 8.21
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 157..187
score: 8.166
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 86..120
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 50..80
score: 7.541
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 19..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103730contigM-pyrifera_M_contig103730:41..613 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103730.796.1mRNA_M-pyrifera_M_contig103730.796.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig103730 41..613 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig103730.796.1 ID=prot_M-pyrifera_M_contig103730.796.1|Name=mRNA_M-pyrifera_M_contig103730.796.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=191bp
MAKEFVIRCPGRPSDRMVASLVSHLSSFGRLDEPAQLAAQVWAKYRSAAD
RHTLNRLVQAYLAKEKFDHAVRLVKGMKQFYGVQPESYACNVIIHAFVTA
RRVDDAQKVLDMMPELAIQPSCITLSSLIAGYAKGGQVEKAKAMIESMES
VWGVRPEIVTHNSIISALCQGNRVEEALRYLRTIKAPLGVR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat