mRNA_M-pyrifera_M_contig103600.762.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig103600.762.1
Unique NamemRNA_M-pyrifera_M_contig103600.762.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A3D4UUQ6_9BACT (Uncharacterized protein n=3 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A3D4UUQ6_9BACT)

HSP 1 Score: 194 bits (492), Expect = 1.900e-53
Identity = 118/200 (59.00%), Postives = 155/200 (77.50%), Query Frame = 1
Query:   43 VTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINFXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFRNSKPFKYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLDNKIDGID-NSAINIVNQDGDGTVWLG 639
            V   +  EDGLV++ IW II D + RIWIGT+ GLSIF+NG+F NF  XXXXXXXXXXXXXXXXXXXXXXXX   GI IFR  KP+K+ + +DGL+G F Q+F +N  D +IWIAHHG+GLD +KDGK+E IT  +GL S++LT++GFSKDGT YVGSE G+S+LTKK+++ +D    GID N +I++V ++ + T+W+G
Sbjct:  193 VISKYNEEDGLVANTIWRIINDRQGRIWIGTDNGLSIFENGKFTNFTSXXXXXXXXXXXXXXXXXXXXXXXXXGGGIAIFREMKPYKFYNKEDGLNGEFIQFFGQNPIDSTIWIAHHGDGLDVFKDGKIEAITENEGLPSNFLTYIGFSKDGTGYVGSEMGLSILTKKLINTIDKNTPGIDSNPSISVV-EENNNTIWIG 391          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A3D1GAL6_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A3D1GAL6_9BACT)

HSP 1 Score: 150 bits (378), Expect = 2.750e-40
Identity = 77/211 (36.49%), Postives = 115/211 (54.50%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINFXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFRNSKPFKYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLDNKIDGIDNSAINIVNQDGDGTVW 633
            G Y  G+S+   + V  T     GL  D ++ I TDS+N +WIGT  GLSI+ NG    F                          +K GIVIFR++KP +YL  K+GLSG       E+  DGSIW++++G+G+DR  +G +EN+ S DGL+SD+   + F     AY+G+  G+++L  + V V+D    G  ++++N V +  DGTVW
Sbjct:  147 GDYLHGVSVIYQDSVIFTIDEASGLAGDRVFRIFTDSRNNVWIGTTNGLSIYRNGSLTTFSTENGLPENSIKVIKELKNGEIWVATEKSGIVIFRDTKPVRYLTQKEGLSGELVSEIEEHPVDGSIWLSYYGSGVDRLFEGHIENLNSTDGLISDFTNSIMFDDRNRAYIGTNIGMTILIPRKVDVIDADTPGFGDASLNGVAEGKDGTVW 357          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A3D4UVM0_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A3D4UVM0_9BACT)

HSP 1 Score: 130 bits (326), Expect = 3.790e-32
Identity = 103/217 (47.47%), Postives = 134/217 (61.75%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINFXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFRNSKPFKYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLD-NKIDGIDNSAINIVNQDGDGTVWLGTDG 648
            G YG+GL +F  + V QT+T+E+GLV +EIW++  D   R+WIGTN G+S+   G     XXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIF++ KP KYLH+K+GLS    Q   E            G    R+     E I+  +GL+S+ +  +  + DG   +G+E G+SVL  K    L  N  D  +  A+ + NQDG G +WLGT G
Sbjct:   38 GTYGNGLKVFYQDSVYQTYTTENGLVGEEIWTLERDKVGRLWIGTNTGVSVLHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFKDQKPTKYLHSKEGLSNLLVQDIEEGXXX-XXXXXXLGXXXIRFNKEVKETISKSEGLISNEINTIEINSDGLILIGTEDGLSVLVPKFFQTLSLNGKDAFEEEAVTL-NQDGKGRIWLGTYG 252          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A350PH98_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A350PH98_9BACT)

HSP 1 Score: 130 bits (326), Expect = 2.120e-31
Identity = 103/217 (47.47%), Postives = 134/217 (61.75%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINFXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFRNSKPFKYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLD-NKIDGIDNSAINIVNQDGDGTVWLGTDG 648
            G YG+GL +F  + V QT+T+E+GLV +EIW++  D   R+WIGTN G+S+   G     XXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIF++ KP KYLH+K+GLS    Q   E            G    R+     E I+  +GL+S+ +  +  + DG   +G+E G+SVL  K    L  N  D  +  A+ + NQDG G +WLGT G
Sbjct:  143 GTYGNGLKVFYQDSVYQTYTTENGLVGEEIWTLERDKVGRLWIGTNTGVSVLHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFKDQKPTKYLHSKEGLSNLLVQDIEEGXXX-XXXXXXLGXXXIRFNKEVKETISKSEGLISNEINTIEINSDGLILIGTEDGLSVLVPKFFQTLSLNGKDAFEEEAVTL-NQDGKGRIWLGTYG 357          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A1B6Y656_9BACT (Uncharacterized protein n=7 Tax=Bacteroidetes/Chlorobi group TaxID=68336 RepID=A0A1B6Y656_9BACT)

HSP 1 Score: 120 bits (301), Expect = 8.820e-28
Identity = 99/217 (45.62%), Postives = 128/217 (58.99%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINFXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFRNSKPFKYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLD-NKIDGIDNSAINIVNQDGDGTVWLGTDG 648
            G YG+GL +F  + + QT+T+E GLV +EIW++  D   R+WIGTN G+S+   G     XXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIF++ KP KYLHTK                              R+     E I+  +GL+SD +  +  + DG   +G+E G+SVL  K  S L  N  D  +  A+ + NQDG+G +WLGT G
Sbjct:  143 GTYGNGLKVFYQDSIYQTYTTEHGLVGEEIWTLERDKVGRLWIGTNTGVSVLHEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDKEGIVIFKDQKPTKYLHTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RFNKEVKETISKSEGLISDEINTIEINSDGLILIGTEDGLSVLVPKFFSTLSLNGKDPFEEEAVTL-NQDGEGRIWLGTYG 357          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: UPI0019910CAA (Uncharacterized protein n=1 Tax=Akkermansiaceae bacterium TaxID=2562705 RepID=UPI0019910CAA)

HSP 1 Score: 58.9 bits (141), Expect = 1.420e-6
Identity = 27/58 (46.55%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFI 174
            G  GSGL  +DGEK+ Q F  +DGL ++ I S+ +D  NR+W+GT++G+S+FD  E++
Sbjct:  564 GTRGSGLFRYDGEKLRQ-FDRKDGLGANSISSVFSDRDNRLWVGTSQGVSLFDGQEWV 620          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A7T0C5C0_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrohelix vancouverensis TaxID=2705534 RepID=A0A7T0C5C0_9BACT)

HSP 1 Score: 58.2 bits (139), Expect = 1.680e-6
Identity = 31/61 (50.82%), Postives = 38/61 (62.30%), Query Frame = 1
Query:    1 GLYGSGLSLFDGEKVT-QTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINF 180
            G +G GL+L D E  T +TFT +DGL  + I  I     NR+WIGTN GLS FD  +F NF
Sbjct:  215 GSWGGGLTLLDPETETLRTFTVQDGLPGNYILEIKEGPDNRLWIGTNAGLSRFDGAQFTNF 275          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A2T6AI42_9FLAO (Two component regulator with propeller domain n=2 Tax=Gramella gaetbulicola TaxID=703340 RepID=A0A2T6AI42_9FLAO)

HSP 1 Score: 58.2 bits (139), Expect = 1.850e-6
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1
Query:   16 GLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLSIFDNGEFINF 180
            G+S  DG  VT  + S DGL+S+++WS+  D K  IWIGT EG+ +FD  EF  F
Sbjct:  124 GISSVDGNIVTNYYES-DGLISNDVWSVAADDKGNIWIGTIEGMCVFDGEEFKAF 177          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A1S1NDG8_9GAMM (Histidine kinase n=2 Tax=Pseudoalteromonas TaxID=53246 RepID=A0A1S1NDG8_9GAMM)

HSP 1 Score: 58.5 bits (140), Expect = 1.990e-6
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 1
Query:  265 EGIVIFRNSKPFKYLHTKDGLSGAF------PQYFAENEQ-DGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVL 537
            E ++  R S   KY+  KD +   F      P + +  +  +G++W    GNGL RY +G+++NI ++DGLVSD +  +   + G  +V SE G+S++
Sbjct:  442 EILISSRTSGLLKYVDHKDAIEPYFSPTIKAPSHVSSMKSIEGALWFGSIGNGLFRYNNGQLDNINTQDGLVSDLVFMLERDQYGNVWVASELGLSLV 539          
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Match: A0A5H2XWV9_9GAMM (Histidine kinase n=1 Tax=Pseudoalteromonas sp. A25 TaxID=116092 RepID=A0A5H2XWV9_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 3.620e-6
Identity = 31/101 (30.69%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  265 EGIVIFRNSKPFKYLHTKDGLSGAF------PQYFAENEQ-DGSIWIAHHGNGLDRYKDGKVENITSEDGLVSDYLTFVGFSKDGTAYVGSETGISVLTKK 546
            E ++  R S   KY+  K+ L   F      P + +  +   G++W    GNGL R+KDG++EN++++DGL+SD +  +   +    ++ SE GIS++  +
Sbjct:  442 ELLISSRTSGLLKYVADKNTLEPYFHPSIQAPSHISSMKNIAGTLWFGSIGNGLYRFKDGRLENVSTQDGLISDIVFMIEQDQYERVWIASELGISIVNSE 542          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig103600.762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A3D4UUQ6_9BACT1.900e-5359.00Uncharacterized protein n=3 Tax=Bacteroidetes/Chlo... [more]
A0A3D1GAL6_9BACT2.750e-4036.49Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A3D4UVM0_9BACT3.790e-3247.47Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A350PH98_9BACT2.120e-3147.47Uncharacterized protein (Fragment) n=1 Tax=Balneol... [more]
A0A1B6Y656_9BACT8.820e-2845.62Uncharacterized protein n=7 Tax=Bacteroidetes/Chlo... [more]
UPI0019910CAA1.420e-646.55Uncharacterized protein n=1 Tax=Akkermansiaceae ba... [more]
A0A7T0C5C0_9BACT1.680e-650.82Uncharacterized protein n=1 Tax=Candidatus Nitrohe... [more]
A0A2T6AI42_9FLAO1.850e-649.09Two component regulator with propeller domain n=2 ... [more]
A0A1S1NDG8_9GAMM1.990e-632.65Histidine kinase n=2 Tax=Pseudoalteromonas TaxID=5... [more]
A0A5H2XWV9_9GAMM3.620e-630.69Histidine kinase n=1 Tax=Pseudoalteromonas sp. A25... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig103600contigM-pyrifera_M_contig103600:2..649 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score77.8
Seed ortholog evalue6.9e-12
Seed eggNOG ortholog1048983.EL17_02060
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Histidine kinase
EggNOG OGs47M7R@768503,4NFZB@976,COG2972@1,COG2972@2,COG3292@1,COG3292@2
COG Functional cat.T
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815541.8328605-CDS-M-pyrifera_M_contig103600:1..6491622815541.8328605-CDS-M-pyrifera_M_contig103600:1..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103600 2..649 -
1692277456.05335-CDS-M-pyrifera_M_contig103600:1..6491692277456.05335-CDS-M-pyrifera_M_contig103600:1..649Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig103600 2..649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig103600.762.1prot_M-pyrifera_M_contig103600.762.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig103600 2..649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig103600.762.1

>prot_M-pyrifera_M_contig103600.762.1 ID=prot_M-pyrifera_M_contig103600.762.1|Name=mRNA_M-pyrifera_M_contig103600.762.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
GLYGSGLSLFDGEKVTQTFTSEDGLVSDEIWSIITDSKNRIWIGTNEGLS
IFDNGEFINFTTDNGLPYNTIRGITEMSNGDIWVGTDKEGIVIFRNSKPF
KYLHTKDGLSGAFPQYFAENEQDGSIWIAHHGNGLDRYKDGKVENITSED
GLVSDYLTFVGFSKDGTAYVGSETGISVLTKKIVSVLDNKIDGIDNSAIN
IVNQDGDGTVWLGTDG
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mRNA from alignment at M-pyrifera_M_contig103600:2..649-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig103600.762.1 ID=mRNA_M-pyrifera_M_contig103600.762.1|Name=mRNA_M-pyrifera_M_contig103600.762.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=648bp|location=Sequence derived from alignment at M-pyrifera_M_contig103600:2..649- (Macrocystis pyrifera P11B4 male)
GGTTTATATGGTTCTGGTCTTTCTCTTTTTGATGGTGAAAAAGTTACTCA AACTTTTACTTCTGAAGATGGATTAGTAAGTGATGAAATCTGGAGCATTA TTACTGATTCAAAAAATCGGATATGGATTGGTACAAACGAAGGGCTAAGT ATCTTTGACAATGGTGAGTTTATAAACTTCACTACAGACAATGGACTACC TTATAATACCATTAGAGGTATTACAGAAATGAGTAATGGTGATATTTGGG TTGGAACTGATAAAGAAGGAATTGTCATATTTAGAAATTCTAAGCCTTTC AAGTACCTCCATACCAAAGACGGACTGAGTGGAGCTTTCCCTCAATACTT TGCTGAAAATGAACAAGATGGTTCAATATGGATTGCACACCATGGGAATG GACTTGATAGATATAAAGATGGAAAAGTTGAAAATATTACCTCTGAAGAT GGACTAGTTTCTGATTACTTAACGTTCGTAGGTTTCTCAAAAGATGGAAC TGCCTATGTCGGCTCAGAAACAGGAATATCTGTACTTACAAAAAAAATAG TTTCTGTATTAGATAACAAAATTGATGGAATTGATAATTCAGCCATAAAT ATAGTTAACCAAGACGGAGATGGCACTGTATGGCTTGGCACCGACGGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig103600:2..649-

>mRNA_M-pyrifera_M_contig103600.762.1 ID=mRNA_M-pyrifera_M_contig103600.762.1|Name=mRNA_M-pyrifera_M_contig103600.762.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig103600:2..649- (Macrocystis pyrifera P11B4 male)
GGTTTATATGGTTCTGGTCTTTCTCTTTTTGATGGTGAAAAAGTTACTCA
AACTTTTACTTCTGAAGATGGATTAGTAAGTGATGAAATCTGGAGCATTA
TTACTGATTCAAAAAATCGGATATGGATTGGTACAAACGAAGGGCTAAGT
ATCTTTGACAATGGTGAGTTTATAAACTTCACTACAGACAATGGACTACC
TTATAATACCATTAGAGGTATTACAGAAATGAGTAATGGTGATATTTGGG
TTGGAACTGATAAAGAAGGAATTGTCATATTTAGAAATTCTAAGCCTTTC
AAGTACCTCCATACCAAAGACGGACTGAGTGGAGCTTTCCCTCAATACTT
TGCTGAAAATGAACAAGATGGTTCAATATGGATTGCACACCATGGGAATG
GACTTGATAGATATAAAGATGGAAAAGTTGAAAATATTACCTCTGAAGAT
GGACTAGTTTCTGATTACTTAACGTTCGTAGGTTTCTCAAAAGATGGAAC
TGCCTATGTCGGCTCAGAAACAGGAATATCTGTACTTACAAAAAAAATAG
TTTCTGTATTAGATAACAAAATTGATGGAATTGATAATTCAGCCATAAAT
ATAGTTAACCAAGACGGAGATGGCACTGTATGGCTTGGCACCGACGGTGG
TTTATATGGTTCTGGTCTTTCTCTTTTTGATGGTGAAAAAGTTACTCAAA
CTTTTACTTCTGAAGATGGATTAGTAAGTGATGAAATCTGGAGCATTATT
ACTGATTCAAAAAATCGGATATGGATTGGTACAAACGAAGGGCTAAGTAT
CTTTGACAATGGTGAGTTTATAAACTTCACTACAGACAATGGACTACCTT
ATAATACCATTAGAGGTATTACAGAAATGAGTAATGGTGATATTTGGGTT
GGAACTGATAAAGAAGGAATTGTCATATTTAGAAATTCTAAGCCTTTCAA
GTACCTCCATACCAAAGACGGACTGAGTGGAGCTTTCCCTCAATACTTTG
CTGAAAATGAACAAGATGGTTCAATATGGATTGCACACCATGGGAATGGA
CTTGATAGATATAAAGATGGAAAAGTTGAAAATATTACCTCTGAAGATGG
ACTAGTTTCTGATTACTTAACGTTCGTAGGTTTCTCAAAAGATGGAACTG
CCTATGTCGGCTCAGAAACAGGAATATCTGTACTTACAAAAAAAATAGTT
TCTGTATTAGATAACAAAATTGATGGAATTGATAATTCAGCCATAAATAT
AGTTAACCAAGACGGAGATGGCACTGTATGGCTTGGCACCGACGGT
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