mRNA_M-pyrifera_M_contig102949.625.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102949.625.1
Unique NamemRNA_M-pyrifera_M_contig102949.625.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A2E7KAV3_9PLAN (Carbohydrate porin n=3 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KAV3_9PLAN)

HSP 1 Score: 216 bits (550), Expect = 2.880e-66
Identity = 110/120 (91.67%), Postives = 116/120 (96.67%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAALEGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MKSGVISVVLLSISLACVSVRADE A LL+SEAA++GNDLL+DSAL PISH+A QEACCESTDGGCLGDECVGATDCGYECSESLFSR+YLTGDLFGARSGLAEHGVLADIQLTQFYQGV
Sbjct:    1 MKSGVISVVLLSISLACVSVRADETASLLLSEAAVDGNDLLSDSALAPISHVAEQEACCESTDGGCLGDECVGATDCGYECSESLFSREYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 120          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A518FX54_9PLAN (Carbohydrate-selective porin, OprB family n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FX54_9PLAN)

HSP 1 Score: 195 bits (496), Expect = 3.200e-58
Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAALEGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MKS V SV LLSISL  V V+A+E   LL+SE A E NDLL+DSALTPISH+AGQEACCE+TDGGCLGDECVGATDCGYECSESLFSR+YLTGDLFGARSGLAEHGVLADIQLTQFYQGV
Sbjct:    1 MKSVVFSVALLSISLVGVLVQAEETPSLLLSEVAGESNDLLSDSALTPISHVAGQEACCEATDGGCLGDECVGATDCGYECSESLFSREYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 120          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A518AA99_9PLAN (Carbohydrate-selective porin, OprB family n=2 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518AA99_9PLAN)

HSP 1 Score: 154 bits (390), Expect = 1.250e-42
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAALEGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MK   I   LLSIS+  V+  A+EPAPLL+SE A EG+DLL+DSAL P+S+++ QE CC+S       DECVG  DCGY+CSE L SRQYLTGDLFGARSGLAEHGV+ADIQLTQFYQGV
Sbjct:    1 MKPSAICWTLLSISMFGVAAWAEEPAPLLLSETAGEGSDLLSDSALAPVSYVSEQEPCCDSP------DECVGTADCGYQCSEDLLSRQYLTGDLFGARSGLAEHGVIADIQLTQFYQGV 114          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A517RP82_9PLAN (Carbohydrate-selective porin, OprB family n=1 Tax=Gimesia alba TaxID=2527973 RepID=A0A517RP82_9PLAN)

HSP 1 Score: 145 bits (367), Expect = 3.450e-39
Identity = 77/127 (60.63%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAAL-------EGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MKS  IS  LLS+SL+C  V A E     +SE+++       + N+  +D+ L PIS+   QE CC+S D  CLGDECV A DCGY CSESLFSR+YLTGDLFGARS LAEHGV+ADIQLTQFYQGV
Sbjct:    1 MKSAAISFALLSMSLSCPPVLAGEQVEFSVSESSIPFFETTVKSNEPFDDAGLAPISYSESQETCCDSPDDCCLGDECVAAADCGYACSESLFSREYLTGDLFGARSRLAEHGVIADIQLTQFYQGV 127          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A2E2C6B2_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C6B2_9PLAN)

HSP 1 Score: 145 bits (365), Expect = 6.730e-39
Identity = 80/127 (62.99%), Postives = 91/127 (71.65%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAA-------LEGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MKS VIS  LLS+SL+   V A E     +SE++       +E N    D+ L PISH+ GQEAC ES  G CL D+CVGA DCGYE SE LFSR+YLTGDLFGARSGLAEHGV+ADIQLTQFYQGV
Sbjct:    1 MKSAVISFALLSMSLSYPPVFAGEQVEFSVSESSSPFLETMVESNQPFADAELAPISHVTGQEACFESAAGDCLSDDCVGAADCGYEFSECLFSREYLTGDLFGARSGLAEHGVIADIQLTQFYQGV 127          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A517XCT1_9PLAN (Carbohydrate-selective porin, OprB family n=1 Tax=Gimesia maris TaxID=122 RepID=A0A517XCT1_9PLAN)

HSP 1 Score: 131 bits (329), Expect = 1.060e-33
Identity = 73/127 (57.48%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 MKSGVISVVLLSISLACVSVRADEPAPLLISEAA-------LEGNDLLNDSALTPISHLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            MKS VIS  LLSISL+   V A+E     +SE++       +E       + LTPIS+   Q+ CCES  G CL DECV A DCGY CS+ + SRQYLTGDLFGARSGLA+HGV A+IQLTQFYQGV
Sbjct:    1 MKSTVISFTLLSISLSLPPVFAEEQLEFSVSESSSPFLETKVESKKSFAAAGLTPISYAESQDTCCESAVGDCLRDECVAAADCGYACSDCILSRQYLTGDLFGARSGLADHGVNAEIQLTQFYQGV 127          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A517Z7L1_9PLAN (Porin B n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z7L1_9PLAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.220e-8
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  121 LNDSALTPISHLAG-QEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            +++S L  + H    Q+A C+++D GC G         G+  S+ L++R +L GD  G RS +A HG++ADI LTQFYQGV
Sbjct:   46 VDESDLISVGHWTSRQDAACDASDAGCDGSLP------GHATSDDLWTRSHLGGDWGGLRSAMAGHGIIADISLTQFYQGV 120          
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Match: A0A2G2JV45_9BACT (Uncharacterized protein n=1 Tax=Blastopirellula sp. TaxID=2024826 RepID=A0A2G2JV45_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 1.730e-6
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1
Query:  205 DECVGATDCGYECSESLFSRQYLTGDLFGARSGLAEHGVLADIQLTQFYQGV 360
            +EC G   C  +C   L SR  L GDL G +S LA+HG++AD++L+Q+YQGV
Sbjct:   44 EECGG---CDVQCQHCLGSRDRLFGDLLGPKSHLAQHGIIADLRLSQYYQGV 92          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102949.625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2E7KAV3_9PLAN2.880e-6691.67Carbohydrate porin n=3 Tax=Gimesia TaxID=1649453 R... [more]
A0A518FX54_9PLAN3.200e-5884.17Carbohydrate-selective porin, OprB family n=1 Tax=... [more]
A0A518AA99_9PLAN1.250e-4267.50Carbohydrate-selective porin, OprB family n=2 Tax=... [more]
A0A517RP82_9PLAN3.450e-3960.63Carbohydrate-selective porin, OprB family n=1 Tax=... [more]
A0A2E2C6B2_9PLAN6.730e-3962.99Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517XCT1_9PLAN1.060e-3357.48Carbohydrate-selective porin, OprB family n=1 Tax=... [more]
A0A517Z7L1_9PLAN1.220e-841.98Porin B n=1 Tax=Maioricimonas rarisocia TaxID=2528... [more]
A0A2G2JV45_9BACT1.730e-650.00Uncharacterized protein n=1 Tax=Blastopirellula sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102949contigM-pyrifera_M_contig102949:297..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size360
Cds size360
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815534.1014671-CDS-M-pyrifera_M_contig102949:296..6561622815534.1014671-CDS-M-pyrifera_M_contig102949:296..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102949 297..656 +
1692277452.9526765-CDS-M-pyrifera_M_contig102949:296..6561692277452.9526765-CDS-M-pyrifera_M_contig102949:296..656Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102949 297..656 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102949.625.1prot_M-pyrifera_M_contig102949.625.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102949 297..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102949.625.1

>prot_M-pyrifera_M_contig102949.625.1 ID=prot_M-pyrifera_M_contig102949.625.1|Name=mRNA_M-pyrifera_M_contig102949.625.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MKSGVISVVLLSISLACVSVRADEPAPLLISEAALEGNDLLNDSALTPIS
HLAGQEACCESTDGGCLGDECVGATDCGYECSESLFSRQYLTGDLFGARS
GLAEHGVLADIQLTQFYQGV
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mRNA from alignment at M-pyrifera_M_contig102949:297..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102949.625.1 ID=mRNA_M-pyrifera_M_contig102949.625.1|Name=mRNA_M-pyrifera_M_contig102949.625.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=360bp|location=Sequence derived from alignment at M-pyrifera_M_contig102949:297..656+ (Macrocystis pyrifera P11B4 male)
ATGAAGTCCGGTGTAATCAGTGTGGTTCTGCTGTCGATCAGTCTGGCATG TGTTTCTGTTCGCGCGGACGAGCCTGCGCCGCTGTTGATATCAGAAGCAG CATTGGAGGGCAATGATCTGCTGAATGATTCTGCGCTGACGCCGATCAGT CATCTTGCGGGGCAGGAGGCTTGCTGCGAATCGACAGACGGCGGTTGCCT GGGCGACGAATGTGTAGGGGCCACTGATTGTGGATATGAATGTTCCGAGT CTCTGTTTTCGCGACAGTATCTGACGGGGGATCTGTTTGGTGCGCGCTCC GGGCTGGCAGAGCATGGGGTGCTGGCGGATATTCAGTTGACGCAGTTCTA CCAGGGGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102949:297..656+

>mRNA_M-pyrifera_M_contig102949.625.1 ID=mRNA_M-pyrifera_M_contig102949.625.1|Name=mRNA_M-pyrifera_M_contig102949.625.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig102949:297..656+ (Macrocystis pyrifera P11B4 male)
ATGAAGTCCGGTGTAATCAGTGTGGTTCTGCTGTCGATCAGTCTGGCATG
TGTTTCTGTTCGCGCGGACGAGCCTGCGCCGCTGTTGATATCAGAAGCAG
CATTGGAGGGCAATGATCTGCTGAATGATTCTGCGCTGACGCCGATCAGT
CATCTTGCGGGGCAGGAGGCTTGCTGCGAATCGACAGACGGCGGTTGCCT
GGGCGACGAATGTGTAGGGGCCACTGATTGTGGATATGAATGTTCCGAGT
CTCTGTTTTCGCGACAGTATCTGACGGGGGATCTGTTTGGTGCGCGCTCC
GGGCTGGCAGAGCATGGGGTGCTGGCGGATATTCAGTTGACGCAGTTCTA
CCAGGGGGTTATGAAGTCCGGTGTAATCAGTGTGGTTCTGCTGTCGATCA
GTCTGGCATGTGTTTCTGTTCGCGCGGACGAGCCTGCGCCGCTGTTGATA
TCAGAAGCAGCATTGGAGGGCAATGATCTGCTGAATGATTCTGCGCTGAC
GCCGATCAGTCATCTTGCGGGGCAGGAGGCTTGCTGCGAATCGACAGACG
GCGGTTGCCTGGGCGACGAATGTGTAGGGGCCACTGATTGTGGATATGAA
TGTTCCGAGTCTCTGTTTTCGCGACAGTATCTGACGGGGGATCTGTTTGG
TGCGCGCTCCGGGCTGGCAGAGCATGGGGTGCTGGCGGATATTCAGTTGA
CGCAGTTCTACCAGGGGGTT
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