mRNA_M-pyrifera_M_contig102544.548.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig102544.548.1
Unique NamemRNA_M-pyrifera_M_contig102544.548.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A6U1TWX4_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A6U1TWX4_9EUKA)

HSP 1 Score: 253 bits (645), Expect = 2.660e-76
Identity = 133/215 (61.86%), Postives = 171/215 (79.53%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNK-TPSYEALRPSSRPGVPAAEQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML +V  IAPRG+ VCG+Y++ +GLTVTL+REKGTGDY+IEAGAL+LAD+GICCIDEFDKM+ DH SLLEAMEQQ VS+AKAGIVCTLPAR +VIAA NP AGHY   KT++ENL+IS AMLSRFDLIF+L+D+P+   D+LLS+HV+A+H    T +  + +  S+ G+ +A  +L  RL V+P  FA  ALPP++L+ Y+ YAK  + P+
Sbjct:  377 KSQMLLAVNQIAPRGVYVCGSYASSAGLTVTLAREKGTGDYAIEAGALVLADQGICCIDEFDKMSKDHQSLLEAMEQQSVSLAKAGIVCTLPARASVIAAANPVAGHYDKAKTVSENLRISQAMLSRFDLIFILMDKPNEDYDQLLSEHVMAMHAAPHTKAKLSGKSFSQEGLGSA--SLRSRLHVNPEEFAPNALPPAMLRKYIGYAKKWVHPK 589          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: L8GY26_ACACA (MCM8 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GY26_ACACA)

HSP 1 Score: 244 bits (622), Expect = 1.650e-75
Identity = 121/215 (56.28%), Postives = 165/215 (76.74%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPSYEALRPSSRPGVPAAEQTLEERLRVDPVAF-AKIALPPSILKTYVRYAKTHIRPQ 642
            KSQ+L +V N+APRG+ VCG+YS+ SGLTVTL +EKG+GDY++EAGAL+L D+G+CCIDEFDKM ++H SLLEAMEQQ +SIAKAGIVC+LPARTAVIAA NP  GHY   KT+AENLK+S A+LSRFDL+F+L+D+PD  +D+++SDHV+ALH+ +   +   +       P   ++L +RL  DP    A   +PP +++ Y+ YAK ++ P+
Sbjct:   99 KSQLLQAVSNVAPRGVYVCGSYSSSSGLTVTLFKEKGSGDYALEAGALILGDQGVCCIDEFDKMPNEHQSLLEAMEQQSISIAKAGIVCSLPARTAVIAAANPVGGHYNRAKTVAENLKMSEAVLSRFDLVFILLDKPDEQRDQMISDHVMALHSAQKKVHRKRKKVENEEDPTKRKSLLQRL--DPSLIPADTLIPPLLVRKYIAYAKKYVSPK 311          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A6A5BL37_NAEFO (MCM domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BL37_NAEFO)

HSP 1 Score: 233 bits (595), Expect = 1.040e-68
Identity = 121/221 (54.75%), Postives = 164/221 (74.21%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALH---TNKTPS----YEALRPSSRPGVPAAEQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQ+L +V +IAPRG+ VCG  ++ SGLTVT++R+  TGD+S+EAGAL+LADRG CCIDEFDKM+S+H +LLEAMEQQ +S+AKAGIVC LPAR +V AA NP  GHY   KT+ ENLKI+PA+LSRFDLIF+L+D+PD ++D+LLS+HV+ LH   TN+T S    +      S+ G    +Q+L+E LR        I +PP +L+ Y+ YA+ ++ P+
Sbjct:  388 KSQLLTAVSHIAPRGIYVCGNTTSTSGLTVTVTRDSATGDFSLEAGALVLADRGCCCIDEFDKMSSEHQALLEAMEQQSISVAKAGIVCNLPARCSVAAAANPVGGHYNRAKTVGENLKINPALLSRFDLIFILLDKPDELRDKLLSEHVLKLHSGSTNRTGSALSTFTTKHALSQVGTQHGQQSLKEILRPKKGESFDI-IPPRLLRKYIAYARQYVMPK 607          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A812BRI1_SEPPH (MCM8 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812BRI1_SEPPH)

HSP 1 Score: 225 bits (574), Expect = 1.630e-68
Identity = 116/217 (53.46%), Postives = 159/217 (73.27%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPSYEALRPSSRPGVPAAE--QTLEERLRV-DPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML +V +IAPR + VCG  +T SGLTVTL ++ G+ D+S+EAGAL+LAD+G CCIDEFDKM + H +LLEAMEQQ +SIAKAGIVC+LPAR ++IAA NP  GHY   KT++ENLK+S A+LSRFDL+F+L+D+P+ + D +LS+HV+ALH  K          S+ G+   E  QTL+ERL + +P+ F    +P  + + YV YA+ ++ P+
Sbjct:   78 KSQMLQAVNSIAPRSVYVCGNTTTTSGLTVTLCKDGGSNDHSLEAGALVLADQGCCCIDEFDKMGTQHQALLEAMEQQSISIAKAGIVCSLPARASIIAAANPVGGHYTKSKTVSENLKMSGALLSRFDLVFILLDKPNEIMDNMLSEHVMALHAGKRQFLSVTVQRSQHGILEKECHQTLQERLMIKEPMDF----IPAQLFRKYVAYARKYVHPR 290          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A482VQU8_9CUCU (DNA helicase MCM8 n=1 Tax=Asbolus verrucosus TaxID=1661398 RepID=A0A482VQU8_9CUCU)

HSP 1 Score: 230 bits (586), Expect = 2.020e-68
Identity = 125/214 (58.41%), Postives = 154/214 (71.96%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPSYEALRPSSRPGVPAAEQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML +  N+APRG+ VCG  ST SGLTVT++RE G G++S+EAGAL+LAD+G CCIDEFDKM + HA LLEAMEQQ +SIAKAGIVCTLP RT ++AA NP  GHY   KTIAENLKIS  MLSRFDLIF+L+D+P+   D LLS+HV+ALH+ K+ S      SS     AA  +L  RLRV         LP S+ + Y+ YA+ ++ PQ
Sbjct:  411 KSQMLQACTNVAPRGVYVCGNTSTGSGLTVTMARESG-GEFSLEAGALMLADQGCCCIDEFDKMPTQHACLLEAMEQQSISIAKAGIVCTLPTRTTILAAANPAGGHYNKAKTIAENLKISSPMLSRFDLIFILLDQPNEELDMLLSEHVLALHSGKSVSNSTFNRSSA----AANTSLRGRLRVQNGEEID-HLPHSLFRKYIAYAQKYVNPQ 618          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A8B8D253_CRAVI (DNA helicase MCM8-like n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8D253_CRAVI)

HSP 1 Score: 231 bits (590), Expect = 9.310e-68
Identity = 122/223 (54.71%), Postives = 160/223 (71.75%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPSYEA-------LRPSSRPGV--PAAEQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML SV NI+PR + VCG  +T SGLTVTLS+E G+GD+++EAGAL+LAD+G CCIDEFDKM + H +LLEAMEQQ +SIAKAGIVC+LPART++IAA NP  GHY   KT++ENLK+  A+LSRFDL+F+L+D+PD   D LLSDHV+ALH  K  S  A       L  S+   +    A++ L ERL++ P       +P  +L+ YV YA+ ++ P+
Sbjct:  450 KSQMLQSVANISPRSVYVCGNTTTTSGLTVTLSKEGGSGDHALEAGALVLADQGCCCIDEFDKMGNQHQALLEAMEQQSISIAKAGIVCSLPARTSIIAAANPVGGHYSKGKTVSENLKMGSALLSRFDLVFILLDKPDEEIDSLLSDHVMALHAGKNKSMAAVTVRRQNLNTSANSSILLSEADKPLSERLKISPGEHVDY-IPHQLLRKYVGYARKYVHPK 671          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: T2M3Z1_HYDVU (DNA replication licensing factor MCM8 n=3 Tax=Hydra vulgaris TaxID=6087 RepID=T2M3Z1_HYDVU)

HSP 1 Score: 231 bits (588), Expect = 1.360e-67
Identity = 120/220 (54.55%), Postives = 163/220 (74.09%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTN---KTPSYEALRPSSRPGVPAA---EQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQ+L +V NIAPR + VCG+ +T +GLTVTLS+E GTG+YS+EAGAL+LAD+G CCIDEFDKM S H +LLEAMEQQ +SIAKAGI+C+LPART+++AA NP  GHY   KT++ENLK+  A+LSRFDL+F+L+D+PD   D +LS+HVV+LH+N     PS    R     G+      ++ L ERL++D       ALPP +L+ Y++YA+ ++ P+
Sbjct:  430 KSQILQAVANIAPRSVYVCGSTTTTTGLTVTLSKESGTGNYSLEAGALVLADKGCCCIDEFDKMGSQHQALLEAMEQQSISIAKAGILCSLPARTSILAAANPVGGHYNRGKTVSENLKMGSALLSRFDLVFVLLDQPDEELDGILSEHVVSLHSNLDNTIPSVTVERNKDVDGLLDQWNEDKPLIERLKIDKNESFD-ALPPQLLRKYIQYARKYVHPE 648          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A8C4QAD3_EPTBU (Minichromosome maintenance 8 homologous recombination repair factor n=4 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QAD3_EPTBU)

HSP 1 Score: 230 bits (587), Expect = 3.110e-67
Identity = 122/224 (54.46%), Postives = 165/224 (73.66%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTP--SYEALRPSSRPGVPAA--------EQTLEERLRVDPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML +V NIAPRG+ VCG  +T SGLTVTL+++  +GDY++EAGAL+LA++G+CCIDEFDKM S H +L+EAMEQQ +S+AKAGIVC+LPART++IAA NP  GHY   KT++ENLK+  A+LSRFDL+F+L+D PD  +D LLS+HV+ALH  K P  S  A+R  S PG  ++        +QTL ERL+V         +P  +L+ YV YA+ +++P+
Sbjct:  470 KSQMLQAVCNIAPRGVYVCGNTTTSSGLTVTLTKDGASGDYALEAGALVLANQGVCCIDEFDKMTSQHQALMEAMEQQSISLAKAGIVCSLPARTSIIAAANPCGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPDEDRDHLLSEHVMALHAGKHPRLSGAAVR-CSAPGEISSISVEDLFGDQTLSERLKVGRGEMLD-TIPHQLLRKYVGYARRYVQPR 691          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A8J1U1Z9_OWEFU (Ofus.G09500 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1U1Z9_OWEFU)

HSP 1 Score: 230 bits (586), Expect = 4.030e-67
Identity = 122/228 (53.51%), Postives = 160/228 (70.18%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPSYEALRPSSRPGVP-----------AAEQTLEERLRV---DPVAFAKIALPPSILKTYVRYAKTHIRPQ 642
            KSQML SV N+APR + VCG  +T SGLTVTLS++   GDY++EAGAL+LAD+G CCIDEFDKM S H +LLEAMEQQ +SIAKAGIVC+LPARTA+IAA NP  GHY   KT++ENLK+  A+LSRFDL+F+L+DRPD   D LLS+HV+ALH  +  S   +  + R G              A++ L ER++V   +P+      +PP +L+ YV YA+ ++ P+
Sbjct:  461 KSQMLQSVANVAPRSVYVCGNTTTTSGLTVTLSKDNAGGDYALEAGALVLADQGCCCIDEFDKMTSQHQALLEAMEQQSISIAKAGIVCSLPARTAIIAAANPVGGHYNKAKTVSENLKLGSALLSRFDLVFILLDRPDEEMDSLLSEHVMALHAGRKQSL-GIATARRSGPSNDEDDETKRQWEADKPLSERIKVQRGEPID----PIPPQLLRKYVGYARKYVHPK 683          
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Match: A0A672NZH4_SINGR (DNA helicase MCM8-like n=4 Tax=Cyprininae TaxID=2743694 RepID=A0A672NZH4_SINGR)

HSP 1 Score: 221 bits (562), Expect = 5.380e-67
Identity = 118/222 (53.15%), Postives = 157/222 (70.72%), Query Frame = 1
Query:    1 KSQMLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADRGICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNPQAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVALHTNKTPS--------YEALRPSSRPGVPAAEQTLEERLRVDP-VAFAKIALPPSILKTYVRYAKTHIRP 639
            KSQML +V N+APRG+ VCG  +T SGLTV+LSR+ G+GDY++EAGAL+L D+GICCIDEFDKM S H +LLEAMEQQ +S+AKAGIVCTLPART++IAA NP  GHY   KT++ENLK+  A+LSRFDL+F+L+D P+   D LLS+HV+A+   K  +        Y     S      ++E+ L + L++ P  AF  I  P  +L+ YV YA+ ++ P
Sbjct:   47 KSQMLQAVCNVAPRGVYVCGNTTTTSGLTVSLSRDSGSGDYALEAGALVLGDQGICCIDEFDKMGSQHQALLEAMEQQSISLAKAGIVCTLPARTSIIAAANPVGGHYNKAKTVSENLKMGSALLSRFDLVFILLDTPNEDHDHLLSEHVMAMRAGKNGAVSSAAVTRYSTQESSISILEVSSEKPLADTLKLVPGEAFDPI--PHQLLRKYVGYARHYVHP 266          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig102544.548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6U1TWX4_9EUKA2.660e-7661.86Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
L8GY26_ACACA1.650e-7556.28MCM8 protein n=1 Tax=Acanthamoeba castellanii str.... [more]
A0A6A5BL37_NAEFO1.040e-6854.75MCM domain-containing protein n=2 Tax=Naegleria Ta... [more]
A0A812BRI1_SEPPH1.630e-6853.46MCM8 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A482VQU8_9CUCU2.020e-6858.41DNA helicase MCM8 n=1 Tax=Asbolus verrucosus TaxID... [more]
A0A8B8D253_CRAVI9.310e-6854.71DNA helicase MCM8-like n=2 Tax=Crassostrea TaxID=6... [more]
T2M3Z1_HYDVU1.360e-6754.55DNA replication licensing factor MCM8 n=3 Tax=Hydr... [more]
A0A8C4QAD3_EPTBU3.110e-6754.46Minichromosome maintenance 8 homologous recombinat... [more]
A0A8J1U1Z9_OWEFU4.030e-6753.51Ofus.G09500 protein n=1 Tax=Owenia fusiformis TaxI... [more]
A0A672NZH4_SINGR5.380e-6753.15DNA helicase MCM8-like n=4 Tax=Cyprininae TaxID=27... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig102544contigM-pyrifera_M_contig102544:1..642 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score229.6
Seed ortholog evalue1.4e-57
Seed eggNOG ortholog6087.XP_002156618.2
Preferred nameMCM8
KEGG koko:K10737
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000278,GO:0000724,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007276,GO:0007292,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0019953,GO:0022402,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0048232,GO:0048609,GO:0050896,GO:0051704,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0097362,GO:1901360,GO:1901576,GO:1903047
EggNOG free text desc.DNA replication initiation
EggNOG OGs38B9W@33154,3BHR8@33208,COG1241@1,KOG0480@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons1
Model size642
Cds size633
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.8596518-UTR-M-pyrifera_M_contig102544:0..91622815528.8596518-UTR-M-pyrifera_M_contig102544:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102544 1..9 +
1692277450.564643-UTR-M-pyrifera_M_contig102544:0..91692277450.564643-UTR-M-pyrifera_M_contig102544:0..9Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig102544 1..9 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815528.8740048-CDS-M-pyrifera_M_contig102544:9..6421622815528.8740048-CDS-M-pyrifera_M_contig102544:9..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102544 10..642 +
1692277450.5773766-CDS-M-pyrifera_M_contig102544:9..6421692277450.5773766-CDS-M-pyrifera_M_contig102544:9..642Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig102544 10..642 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig102544.548.1prot_M-pyrifera_M_contig102544.548.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig102544 10..642 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig102544.548.1

>prot_M-pyrifera_M_contig102544.548.1 ID=prot_M-pyrifera_M_contig102544.548.1|Name=mRNA_M-pyrifera_M_contig102544.548.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=211bp
MLASVVNIAPRGMLVCGTYSTKSGLTVTLSREKGTGDYSIEAGALLLADR
GICCIDEFDKMASDHASLLEAMEQQCVSIAKAGIVCTLPARTAVIAAGNP
QAGHYRMEKTIAENLKISPAMLSRFDLIFLLVDRPDPVKDRLLSDHVVAL
HTNKTPSYEALRPSSRPGVPAAEQTLEERLRVDPVAFAKIALPPSILKTY
VRYAKTHIRPQ
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mRNA from alignment at M-pyrifera_M_contig102544:1..642+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig102544.548.1 ID=mRNA_M-pyrifera_M_contig102544.548.1|Name=mRNA_M-pyrifera_M_contig102544.548.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig102544:1..642+ (Macrocystis pyrifera P11B4 male)
AAGAGCCAGATGCTGGCCTCGGTGGTGAACATTGCGCCGCGCGGCATGCT GGTGTGCGGCACCTACTCGACCAAGTCCGGCCTGACGGTGACGCTCTCGC GCGAGAAGGGCACGGGCGACTACTCGATCGAGGCAGGCGCGCTGCTCCTC GCCGACCGCGGCATCTGCTGCATCGACGAGTTCGACAAGATGGCCAGCGA CCACGCCTCGCTGCTGGAGGCGATGGAGCAGCAGTGCGTCAGCATCGCCA AGGCGGGCATCGTCTGCACGCTGCCCGCGCGCACCGCGGTCATCGCCGCA GGCAACCCCCAGGCAGGCCACTACCGCATGGAGAAGACCATCGCTGAGAA CCTCAAGATCTCTCCTGCAATGCTCTCGCGCTTCGACCTCATCTTCCTGC TGGTCGACCGGCCCGACCCCGTCAAGGACCGCCTCCTCTCCGACCACGTC GTGGCCCTGCACACCAACAAGACGCCCTCCTACGAGGCCCTGCGCCCCTC CTCGCGCCCTGGCGTCCCTGCCGCCGAGCAGACCCTCGAGGAGCGCCTGC GCGTGGACCCCGTCGCCTTCGCGAAGATTGCCCTCCCTCCCAGCATCCTC AAAACCTATGTTCGTTACGCCAAGACCCACATCCGACCCCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig102544:1..642+

>mRNA_M-pyrifera_M_contig102544.548.1 ID=mRNA_M-pyrifera_M_contig102544.548.1|Name=mRNA_M-pyrifera_M_contig102544.548.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1266bp|location=Sequence derived from alignment at M-pyrifera_M_contig102544:1..642+ (Macrocystis pyrifera P11B4 male)
ATGCTGGCCTCGGTGGTGAACATTGCGCCGCGCGGCATGCTGGTGTGCGG
CACCTACTCGACCAAGTCCGGCCTGACGGTGACGCTCTCGCGCGAGAAGG
GCACGGGCGACTACTCGATCGAGGCAGGCGCGCTGCTCCTCGCCGACCGC
GGCATCTGCTGCATCGACGAGTTCGACAAGATGGCCAGCGACCACGCCTC
GCTGCTGGAGGCGATGGAGCAGCAGTGCGTCAGCATCGCCAAGGCGGGCA
TCGTCTGCACGCTGCCCGCGCGCACCGCGGTCATCGCCGCAGGCAACCCC
CAGGCAGGCCACTACCGCATGGAGAAGACCATCGCTGAGAACCTCAAGAT
CTCTCCTGCAATGCTCTCGCGCTTCGACCTCATCTTCCTGCTGGTCGACC
GGCCCGACCCCGTCAAGGACCGCCTCCTCTCCGACCACGTCGTGGCCCTG
CACACCAACAAGACGCCCTCCTACGAGGCCCTGCGCCCCTCCTCGCGCCC
TGGCGTCCCTGCCGCCGAGCAGACCCTCGAGGAGCGCCTGCGCGTGGACC
CCGTCGCCTTCGCGAAGATTGCCCTCCCTCCCAGCATCCTCAAAACCTAT
GTTCGTTACGCCAAGACCCACATCCGACCCCAGATGCTGGCCTCGGTGGT
GAACATTGCGCCGCGCGGCATGCTGGTGTGCGGCACCTACTCGACCAAGT
CCGGCCTGACGGTGACGCTCTCGCGCGAGAAGGGCACGGGCGACTACTCG
ATCGAGGCAGGCGCGCTGCTCCTCGCCGACCGCGGCATCTGCTGCATCGA
CGAGTTCGACAAGATGGCCAGCGACCACGCCTCGCTGCTGGAGGCGATGG
AGCAGCAGTGCGTCAGCATCGCCAAGGCGGGCATCGTCTGCACGCTGCCC
GCGCGCACCGCGGTCATCGCCGCAGGCAACCCCCAGGCAGGCCACTACCG
CATGGAGAAGACCATCGCTGAGAACCTCAAGATCTCTCCTGCAATGCTCT
CGCGCTTCGACCTCATCTTCCTGCTGGTCGACCGGCCCGACCCCGTCAAG
GACCGCCTCCTCTCCGACCACGTCGTGGCCCTGCACACCAACAAGACGCC
CTCCTACGAGGCCCTGCGCCCCTCCTCGCGCCCTGGCGTCCCTGCCGCCG
AGCAGACCCTCGAGGAGCGCCTGCGCGTGGACCCCGTCGCCTTCGCGAAG
ATTGCCCTCCCTCCCAGCATCCTCAAAACCTATGTTCGTTACGCCAAGAC
CCACATCCGACCCCAG
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