mRNA_M-pyrifera_M_contig101987.427.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101987.427.1
Unique NamemRNA_M-pyrifera_M_contig101987.427.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101987.427.1 vs. uniprot
Match: A0A4P9Y227_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y227_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 1.940e-5
Identity = 42/113 (37.17%), Postives = 57/113 (50.44%), Query Frame = 1 
Query:    4 LTHLPDELGFCRRLRVLHVQR----NRLQTLPTTF-ASLHRLEEMDVSHNELTWVPEQLLNVDESLADALAQGKVSLEAIEGETRGCLSLRSLDLSHNCLTALPLSLCKCKTL 327
            L HLP  LG C RLR+L +      N L +LP +  +SL  LEE+D+S N LT +P+            LA                L+LRSLD+S N L +LP +L +C+ L
Sbjct:   18 LPHLPRSLGQCTRLRILRLGSVYGGNLLTSLPDSLISSLPHLEELDLSGNHLTHLPD------------LAWP--------------LTLRSLDVSDNSLISLPSNLGQCQRL 104
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BLAST of mRNA_M-pyrifera_M_contig101987.427.1 vs. uniprot
Match: A0A8B0LN27_THAMO (Toll-like receptor 7 n=1 Tax=Thamnaconus modestus TaxID=325629 RepID=A0A8B0LN27_THAMO)

HSP 1 Score: 50.8 bits (120), Expect = 8.860e-5
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   94 FASLHRLEEMDVSHNELTWVPEQLLNVDESLADALAQGKVSLEAIEGETRGCL----SLRSLDLSHNCLTALPLSLCKC-KTLACFYVHDNPFLLL 366
            F  LH L  +D+SHN L ++P+Q+ +    L D L++  +    ++    G L    S+R LDLS N LT +P  L  C ++L+   +H N  L L
Sbjct:  651 FRKLHNLTHLDISHNNLNFIPQQVFS---GLPDKLSELYIKNNKLKSFAWGKLQLLPSIRILDLSGNSLTTVPRELSNCSRSLSKLILHKNQILKL 743
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101987.427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A4P9Y227_9FUNG1.940e-537.17Uncharacterized protein (Fragment) n=1 Tax=Piptoce... [more]
A0A8B0LN27_THAMO8.860e-534.38Toll-like receptor 7 n=1 Tax=Thamnaconus modestus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101987contigM-pyrifera_M_contig101987:3..374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.38819-CDS-M-pyrifera_M_contig101987:2..3741622815520.38819-CDS-M-pyrifera_M_contig101987:2..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101987 3..374 +
1692277447.6103373-CDS-M-pyrifera_M_contig101987:2..3741692277447.6103373-CDS-M-pyrifera_M_contig101987:2..374Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101987 3..374 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101987.427.1prot_M-pyrifera_M_contig101987.427.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101987 3..374 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101987.427.1

>prot_M-pyrifera_M_contig101987.427.1 ID=prot_M-pyrifera_M_contig101987.427.1|Name=mRNA_M-pyrifera_M_contig101987.427.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
DLTHLPDELGFCRRLRVLHVQRNRLQTLPTTFASLHRLEEMDVSHNELTW
VPEQLLNVDESLADALAQGKVSLEAIEGETRGCLSLRSLDLSHNCLTALP
LSLCKCKTLACFYVHDNPFLLLPE
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mRNA from alignment at M-pyrifera_M_contig101987:3..374+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101987.427.1 ID=mRNA_M-pyrifera_M_contig101987.427.1|Name=mRNA_M-pyrifera_M_contig101987.427.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig101987:3..374+ (Macrocystis pyrifera P11B4 male)
GACCTCACTCACCTCCCAGATGAGCTCGGGTTCTGCCGCCGCCTGCGGGT
GCTGCACGTGCAGCGCAACCGCCTCCAGACGCTGCCCACGACCTTCGCCA
GCCTGCACCGCCTCGAGGAGATGGATGTGAGCCACAATGAGCTCACGTGG
GTACCAGAGCAACTCCTGAATGTCGATGAGTCATTGGCGGACGCACTGGC
GCAGGGAAAGGTTTCTTTGGAAGCCATTGAGGGCGAGACACGGGGGTGCC
TCTCGCTCAGGTCCCTCGACCTTTCGCACAACTGCCTGACTGCGCTGCCT
CTTTCACTTTGCAAGTGCAAGACACTGGCATGCTTCTACGTGCATGACAA
CCCTTTCCTTCTGCTACCAGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101987:3..374+

>mRNA_M-pyrifera_M_contig101987.427.1 ID=mRNA_M-pyrifera_M_contig101987.427.1|Name=mRNA_M-pyrifera_M_contig101987.427.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig101987:3..374+ (Macrocystis pyrifera P11B4 male)
GACCTCACTCACCTCCCAGATGAGCTCGGGTTCTGCCGCCGCCTGCGGGT
GCTGCACGTGCAGCGCAACCGCCTCCAGACGCTGCCCACGACCTTCGCCA
GCCTGCACCGCCTCGAGGAGATGGATGTGAGCCACAATGAGCTCACGTGG
GTACCAGAGCAACTCCTGAATGTCGATGAGTCATTGGCGGACGCACTGGC
GCAGGGAAAGGTTTCTTTGGAAGCCATTGAGGGCGAGACACGGGGGTGCC
TCTCGCTCAGGTCCCTCGACCTTTCGCACAACTGCCTGACTGCGCTGCCT
CTTTCACTTTGCAAGTGCAAGACACTGGCATGCTTCTACGTGCATGACAA
CCCTTTCCTTCTGCTACCAGAGGACCTCACTCACCTCCCAGATGAGCTCG
GGTTCTGCCGCCGCCTGCGGGTGCTGCACGTGCAGCGCAACCGCCTCCAG
ACGCTGCCCACGACCTTCGCCAGCCTGCACCGCCTCGAGGAGATGGATGT
GAGCCACAATGAGCTCACGTGGGTACCAGAGCAACTCCTGAATGTCGATG
AGTCATTGGCGGACGCACTGGCGCAGGGAAAGGTTTCTTTGGAAGCCATT
GAGGGCGAGACACGGGGGTGCCTCTCGCTCAGGTCCCTCGACCTTTCGCA
CAACTGCCTGACTGCGCTGCCTCTTTCACTTTGCAAGTGCAAGACACTGG
CATGCTTCTACGTGCATGACAACCCTTTCCTTCTGCTACCAGAG
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