mRNA_M-pyrifera_M_contig101974.425.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101974.425.1
Unique NamemRNA_M-pyrifera_M_contig101974.425.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: D7FHQ9_ECTSI (Translocation protein SEC62 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHQ9_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.000e-34
Identity = 59/61 (96.72%), Postives = 61/61 (100.00%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            VWTFEKGS+GQGYYRVVAVGGV+AFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE
Sbjct:  206 VWTFEKGSSGQGYYRVVAVGGVIAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 266
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A835ZAL0_9STRA (Translocation protein SEC62 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL0_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 9.720e-21
Identity = 41/61 (67.21%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            VW+ E GS GQGYYR   +   VAFV WAY QPTDFD+FI+AQ DF+SDLY G LLSDVS+
Sbjct:  205 VWSLEPGSKGQGYYRSTILVAFVAFVYWAYTQPTDFDSFIAAQKDFVSDLYEGNLLSDVSQ 265
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A482SKX2_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKX2_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 1.420e-18
Identity = 33/60 (55.00%), Postives = 48/60 (80.00%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVS 180
            +++FEKGSTGQG YR+  V  ++ F  WAY QPT+FD F++AQ +F+ DLY+GKL++DV+
Sbjct:   89 IYSFEKGSTGQGLYRLALVASLIGFGYWAYTQPTEFDGFLTAQKEFIDDLYSGKLIADVA 148
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A6S8BIM4_9STRA (Translocation protein SEC62 n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A6S8BIM4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.170e-18
Identity = 35/60 (58.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    4 WTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            ++FE G+ GQ YYR   V  +++F I+ YNQPTDFDTF++AQ DF+SDLY GKL+SD S+
Sbjct:  205 YSFENGAPGQRYYRFALVTSLISFAIYCYNQPTDFDTFLAAQRDFVSDLYEGKLISDTSQ 264
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A7R9YBG5_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBG5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 1.610e-17
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            +++ EK + GQ Y+R+  +G +VAF +WA NQPTDFDTFISAQ DF+ DLY+G LLSD S+
Sbjct:  198 LYSLEKSAPGQMYWRLGFLGALVAFGVWAANQPTDFDTFISAQKDFLDDLYSGNLLSDTSQ 258
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A7S2V2J2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2J2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.460e-16
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            V+TFEK   GQGYYR   + G+ A   WAY QPT+FD+ I AQ  F+ DLY G LL+D S+
Sbjct:   17 VYTFEKSPGGQGYYRAAVLIGLGALFYWAYTQPTEFDSLIQAQKQFVDDLYEGNLLADQSQ 77
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A6V1K7K4_HETAK (Translocation protein SEC62 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7K4_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 2.160e-15
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1 
Query:    4 WTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            +TFEK + GQ  YR+ A G +     WAY QPTDFDTF+S Q DF+ DLY+G LLSD+S+
Sbjct:  199 YTFEKVAGGQLIYRLGAFGAIGGLFYWAYTQPTDFDTFLSVQRDFLDDLYSGNLLSDMSQ 258
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: I2CPB5_NANGC (Translocation protein SEC62 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CPB5_NANGC)

HSP 1 Score: 74.3 bits (181), Expect = 3.930e-14
Identity = 32/61 (52.46%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            ++++EK   GQG YR   V   VAFV WAY+QPT+FD+ ++AQ  FM DLY G LL+DV++
Sbjct:  232 LYSWEKSPPGQGIYRASLVLAFVAFVYWAYSQPTEFDSLLTAQKQFMHDLYEGNLLADVAQ 292
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A6U3TWY7_9STRA (Translocation protein SEC62 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3TWY7_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 8.220e-14
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            +++FEK   GQ  YR+    G  +F  WA  QP++FD FISAQ DF+SDLY GKLLSD+S+
Sbjct:  167 IFSFEKSPPGQFLYRLGVAVGFFSFCWWAVTQPSEFDGFISAQGDFISDLYQGKLLSDMSQ 227
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BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Match: A0A7S2SAW3_9STRA (Translocation protein SEC62 n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SAW3_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.230e-12
Identity = 32/61 (52.46%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:    1 VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDLYAGKLLSDVSE 183
            V + EK   GQ  YR+  + G+ +F  WA  QP++FD F+SAQ DF+ DLYAG LLSDVS+
Sbjct:  230 VISIEKTKPGQLMYRIGVLVGLSSFCYWAVTQPSEFDGFVSAQGDFLKDLYAGTLLSDVSQ 290
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101974.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FHQ9_ECTSI2.000e-3496.72Translocation protein SEC62 n=2 Tax=Ectocarpus Tax... [more]
A0A835ZAL0_9STRA9.720e-2167.21Translocation protein SEC62 n=1 Tax=Tribonema minu... [more]
A0A482SKX2_9ARCH1.420e-1855.00Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A6S8BIM4_9STRA7.170e-1858.33Translocation protein SEC62 n=1 Tax=Aureoumbra lag... [more]
A0A7R9YBG5_9STRA1.610e-1759.02Translocation protein SEC62 (Fragment) n=1 Tax=Pin... [more]
A0A7S2V2J2_9STRA6.460e-1654.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1K7K4_HETAK2.160e-1556.67Translocation protein SEC62 n=1 Tax=Heterosigma ak... [more]
I2CPB5_NANGC3.930e-1452.46Translocation protein SEC62 n=2 Tax=Nannochloropsi... [more]
A0A6U3TWY7_9STRA8.220e-1454.10Translocation protein SEC62 n=2 Tax=Ditylum bright... [more]
A0A7S2SAW3_9STRA1.230e-1252.46Translocation protein SEC62 n=1 Tax=Eucampia antar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101974contigM-pyrifera_M_contig101974:375..563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue1.7e-27
Seed eggNOG ortholog2880.D7FHQ9
Preferred nameSEC62
KEGG koko:K09490,ko:K12275
KEGG TC1.A.15.1,1.A.15.2,1.A.33
KEGG Pathwayko03060,ko04141,ko04918,ko05020,map03060,map04141,map04918,map05020
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006605,GO:0006612,GO:0006613,GO:0006620,GO:0006810,GO:0006886,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008565,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0023052,GO:0030867,GO:0031090,GO:0031204,GO:0031205,GO:0031207,GO:0031224,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0038023,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046907,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060089,GO:0065002,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0098588,GO:0098796,GO:0098827
EggNOG free text desc.posttranslational protein targeting to endoplasmic reticulum membrane
EggNOG OGsCOG5232@1,KOG2927@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko03110,ko04131,ko04147
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.3201637-CDS-M-pyrifera_M_contig101974:374..5631622815520.3201637-CDS-M-pyrifera_M_contig101974:374..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101974 375..563 -
1692277447.564785-CDS-M-pyrifera_M_contig101974:374..5631692277447.564785-CDS-M-pyrifera_M_contig101974:374..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101974 375..563 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101974.425.1prot_M-pyrifera_M_contig101974.425.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101974 375..563 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101974.425.1

>prot_M-pyrifera_M_contig101974.425.1 ID=prot_M-pyrifera_M_contig101974.425.1|Name=mRNA_M-pyrifera_M_contig101974.425.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=63bp
VWTFEKGSTGQGYYRVVAVGGVVAFVIWAYNQPTDFDTFISAQSDFMSDL
YAGKLLSDVSEV*
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mRNA from alignment at M-pyrifera_M_contig101974:375..563-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101974.425.1 ID=mRNA_M-pyrifera_M_contig101974.425.1|Name=mRNA_M-pyrifera_M_contig101974.425.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=189bp|location=Sequence derived from alignment at M-pyrifera_M_contig101974:375..563- (Macrocystis pyrifera P11B4 male)
GTGTGGACCTTCGAGAAGGGCTCGACCGGGCAGGGGTACTACCGAGTGGT
CGCGGTCGGGGGAGTCGTGGCGTTCGTCATCTGGGCCTACAACCAGCCAA
CCGACTTCGACACATTCATCAGTGCCCAGTCCGACTTTATGTCGGACCTC
TACGCGGGGAAGCTACTCTCGGACGTTTCCGAGGTATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101974:375..563-

>mRNA_M-pyrifera_M_contig101974.425.1 ID=mRNA_M-pyrifera_M_contig101974.425.1|Name=mRNA_M-pyrifera_M_contig101974.425.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=378bp|location=Sequence derived from alignment at M-pyrifera_M_contig101974:375..563- (Macrocystis pyrifera P11B4 male)
GTGTGGACCTTCGAGAAGGGCTCGACCGGGCAGGGGTACTACCGAGTGGT
CGCGGTCGGGGGAGTCGTGGCGTTCGTCATCTGGGCCTACAACCAGCCAA
CCGACTTCGACACATTCATCAGTGCCCAGTCCGACTTTATGTCGGACCTC
TACGCGGGGAAGCTACTCTCGGACGTTTCCGAGGTATAAGTGTGGACCTT
CGAGAAGGGCTCGACCGGGCAGGGGTACTACCGAGTGGTCGCGGTCGGGG
GAGTCGTGGCGTTCGTCATCTGGGCCTACAACCAGCCAACCGACTTCGAC
ACATTCATCAGTGCCCAGTCCGACTTTATGTCGGACCTCTACGCGGGGAA
GCTACTCTCGGACGTTTCCGAGGTATAA
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