mRNA_M-pyrifera_M_contig10197.424.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10197.424.1
Unique NamemRNA_M-pyrifera_M_contig10197.424.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10197.424.1 vs. uniprot
Match: D8LJU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJU4_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 7.840e-15
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 1 
Query: 1072 QLTEFDEKRDALELKEIMIVERTRERRKSLMKERAKGQAVIQYLTQLHREERIRSNFLRAKGNIL 1266
            ++ E+D +RDALELKEIMI ERTRERR+ LM+E+AKGQAV+QYLT+L REER RSN LRAKG +L
Sbjct:  285 EVMEWDARRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLTKLEREERGRSNLLRAKGLML 349
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BLAST of mRNA_M-pyrifera_M_contig10197.424.1 vs. uniprot
Match: A0A6H5KRP0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRP0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.080e-14
Identity = 47/65 (72.31%), Postives = 56/65 (86.15%), Query Frame = 1 
Query: 1072 QLTEFDEKRDALELKEIMIVERTRERRKSLMKERAKGQAVIQYLTQLHREERIRSNFLRAKGNIL 1266
            +L E+D +RDALELKEIMI ERTRERR+ LM+E+AKGQAV+QYL +L REER RSN LRAKG +L
Sbjct:  580 ELMEWDAQRDALELKEIMIAERTRERRRGLMREQAKGQAVVQYLAKLEREERGRSNLLRAKGLML 644
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10197.424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJU4_ECTSI7.840e-1572.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRP0_9PHAE2.080e-1472.31Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10197contigM-pyrifera_M_contig10197:1029..4998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000170.1
Exons4
Model size1266
Cds size1266
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10197.424.1prot_M-pyrifera_M_contig10197.424.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10197 1029..4998 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.244174-CDS-M-pyrifera_M_contig10197:1028..11781622815520.244174-CDS-M-pyrifera_M_contig10197:1028..1178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 1029..1178 -
1692277447.515854-CDS-M-pyrifera_M_contig10197:1028..11781692277447.515854-CDS-M-pyrifera_M_contig10197:1028..1178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 1029..1178 -
1622815520.259147-CDS-M-pyrifera_M_contig10197:2955..36451622815520.259147-CDS-M-pyrifera_M_contig10197:2955..3645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 2956..3645 -
1692277447.530697-CDS-M-pyrifera_M_contig10197:2955..36451692277447.530697-CDS-M-pyrifera_M_contig10197:2955..3645Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 2956..3645 -
1622815520.2686574-CDS-M-pyrifera_M_contig10197:4459..45731622815520.2686574-CDS-M-pyrifera_M_contig10197:4459..4573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 4460..4573 -
1692277447.5409272-CDS-M-pyrifera_M_contig10197:4459..45731692277447.5409272-CDS-M-pyrifera_M_contig10197:4459..4573Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 4460..4573 -
1622815520.2797108-CDS-M-pyrifera_M_contig10197:4686..49981622815520.2797108-CDS-M-pyrifera_M_contig10197:4686..4998Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 4687..4998 -
1692277447.5510504-CDS-M-pyrifera_M_contig10197:4686..49981692277447.5510504-CDS-M-pyrifera_M_contig10197:4686..4998Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10197 4687..4998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10197.424.1

>prot_M-pyrifera_M_contig10197.424.1 ID=prot_M-pyrifera_M_contig10197.424.1|Name=mRNA_M-pyrifera_M_contig10197.424.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=422bp
RSSYTLLPPGYLESRGGTVRKPPSKGVPPNGIAAGGVAGAASTPASGSIA
AVTASPAATAAAAAAATAADMAPNRSRRWLLTDDQVLDDIKFMRVRGMSR
KVVLTTTKRTTPSLHFRASDRRGGGGSTKTQVKPNLEKVSLFIKKPPPEE
PEVDPRLTPSEKEWLKAAREEEAQEKESAAESAKNLEAAAGDEEGEGGEG
GAEAGGGGESVAAVVDKKGVGVGDAAGAASACGSATSAATANAGGTYSGK
GKGKAVQGAPTTSTANPTTTNTGVVVGGGNAEGGVGSVAATAAEASDSAG
GAMVVVAGAGAGAGAGGREGANGGGTAGVEKLRGKDGQVVEAGGKGEGPP
PVRWSPKQLTEFDEKRDALELKEIMIVERTRERRKSLMKERAKGQAVIQY
LTQLHREERIRSNFLRAKGNIL
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mRNA from alignment at M-pyrifera_M_contig10197:1029..4998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10197.424.1 ID=mRNA_M-pyrifera_M_contig10197.424.1|Name=mRNA_M-pyrifera_M_contig10197.424.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3970bp|location=Sequence derived from alignment at M-pyrifera_M_contig10197:1029..4998- (Macrocystis pyrifera P11B4 male)
AGGTCTAGCTACACTCTGCTGCCGCCCGGTTACCTCGAGAGTCGCGGCGG
CACCGTCCGAAAGCCGCCCTCGAAGGGAGTACCCCCTAACGGGATAGCTG
CAGGCGGTGTTGCCGGTGCCGCTTCGACCCCGGCTAGCGGCTCCATTGCT
GCTGTTACGGCTTCCCCGGCTGCAACCGCCGCCGCCGCCGCCGCTGCTAC
CGCCGCTGACATGGCGCCTAACAGGTCTAGACGGTGGCTGCTAACGGATG
ATCAAGTTTTGGACGACATCAAGTTTATGAGGGTGAGGGGGATGAGCCGC
AAGGTGGTCTTGGTTTTGTGCTTTTAATCTTGGCAGGAAGGCAGGTTGAG
CGGTGGTGGGTTTATTTCTTCTCTCTCGGATGAGCACATCAATTTAGAGA
CACTATCAATAGTGCGAGGGCGCAGACAACAACAAAAAGAACGACACCGT
CTCTCCATTTTCGAGCTTCAGACAGACGGGGGGGGGGGGGGTCGACTAAA
ACCCAAGTAAAACCAAACCTTGAAAAAGTATCGCTTTTCGTAAATTCGTG
TTCATAAACCCCACCCCACTGGCATGCTTTCGATTGTCACCTTATGAGGA
GAGTGCTGTGTTCTTGTCTTTCTGTGGTGCGCCTTGTGTATAGCAGTATG
TACAGTATGTAAAGTATCACTCTGGCTGCTGTTGTAAGAACCGTTCGGGT
GTTAATATTTGTAGCCAAACGATCCTTAAATTTTCGGACACTGTTACGCC
AGGGTACACATGGTCGGGAAGTGTACCTATTGCGGGGGGCAATAGTAAAT
AGAACAAAATTTTGTTAGTAAAAATAGGTGAATATGTAGGTTTTTGTGTG
TACCGTAGGTCCTATTAACTATGGTCCCCTGTAATAGGTAGGTTTTCTTT
TATTGTTCATGTATGACGTGGATTCCTTTGGGTTCGATTGTATCCCAAAA
TAATGACGTTCTCTACAGGTCGCCGATTCGAACAGTTCATGATCCACGTG
TTTCAAGGCAGACCTATTCCCGATCTTTGAATGATCTAGCTCATGTTTTT
TGGTGGGATCCGTACTGTAATCTGCATGATCTACAGCAGTAGCACATATT
TCCTGTGTGTGATCTATCTGCCCTATATGGCAGATCCTGCACATACATCC
GTTCACAACGGCAGCTGAGGAACTAGATCATCTAGATCGTGATCTGTATG
ATCTATAGATGATCTGTAGATGCTATGTCGGAGGTGTGATATGTAGTTAC
ATGACCCCCTCTTTTCGATCGACTAACCTCGCCCTTCCCGAATGGGCGAT
TGAATTGTATCCAGGTGGACTTGCCCAAAAACGTGGTAGTGGCTCCCACA
CAGATCAAGAAGCCGCCACCTGAAGAGCCAGAGGTGGACCCGCGGCTAAC
CCCGTCCGAAAAAGAATGGTTAAAGGCGGCGAGGGAGGAGGAAGCCCAGG
AGAAGGAGTCGGCCGCAGAGTCAGCCAAGAACCTCGAAGCCGCCGCCGGC
GACGAGGAGGGTGAGGGAGGGGAGGGGGGTGCGGAGGCTGGAGGTGGGGG
TGAGAGTGTTGCCGCGGTGGTGGACAAGAAGGGGGTCGGGGTTGGGGATG
CTGCTGGTGCCGCTAGTGCTTGCGGTTCTGCTACTAGTGCTGCCACTGCT
AACGCTGGCGGTACTTATTCCGGAAAAGGCAAGGGGAAGGCGGTTCAGGG
TGCCCCCACCACCTCCACCGCCAACCCCACCACCACCAATACGGGGGTAG
TAGTCGGCGGGGGTAATGCTGAAGGAGGCGTTGGTTCGGTGGCGGCGACG
GCGGCGGAGGCGTCGGATAGCGCGGGGGGGGCGATGGTGGTGGTGGCGGG
AGCGGGGGCGGGGGCGGGGGCGGGAGGGAGGGAGGGGGCGAATGGAGGAG
GCACGGCCGGGGTGGAAAAATTGAGAGGGAAGGATGGACAGGTGGTGGAG
GCGGGCGGGAAGGGGGAAGGGCCGCCACCAGTGCGGTGGAGCCCCAAGCA
GCTGACGGAGTTCGACGAAAAGAGAGACGCTTTGGAGTTGAAGGTGGGCC
TCGAAGTTGGTGATTTGTGTGTGCTTGGTTTGGGTGGTGGTGTTGTTTTG
TTGATGGTACGTAGCTGCGTGGCATCATGCATACGAAAGTGCGAAAGCCT
CTACAAGTATACAGTACAGATCATGCAAGAGTCCAGGGCATGGGCAGGGG
CATCTGAGGGTGTACCCCAGAGGTGTGAGGCGCTGCATTTGTGCGTCTTC
TTGGTTACTGGGTGGTGTTTCTGCTTCACATGTGGTTGTGATATTTATGA
AAACTTGGTTGGATCAAACAGAGTATGCAAACCAGTTATGTTCGTACGTA
GGGCTCGGGGTTGAAATTGAGCTTCGACGTTGATAAATTCGCGCTTGATT
TCGAGATAGGTTGGATAATGGCGTGTGCCAACCTCTGAACTGGACGGCAC
AGATCAGAACAGATCATACAGATCATAATACTAGAGGTACGGGCCTGGGT
GTGGAGGCAAGGCCGGTGGAGGGTAATAAACCGCTCATTCGACGAAATTA
CTGCTGGCTGTGTCGGGCTGGGCTGCGGACAACCCCCGATTTTGGTCGTC
GTGGGATCAGGGCGCTTGGTGAACCCTGCCCATAACAACTACTATATATG
CCCAGGGACATTTTTGGAGAGTCCAGGTCCACGTGGGATGAGGTCGGGGT
TGGAACCAGGTTCTCTCATGTTTTCTGTTCGTTGTTTTTCATGCCATGTA
TTTTTGTTGGCCTATTTCTTCATCCCCGCCTCTTTAGCAACTCAGGTCCG
TGGGAACATATCAAGCACTTCTATCCCTTTAGCACGGTGTCGGTGGGCGA
CAACGCTGTGAACACGCTAAATACTGCGGGAGCTAGACAACCAAGGCATC
GTTTATTTTATTTTGTTTTTTGGCGGTCACCACGGCGGGCGGTCGGGTTA
GACCAGTCGTGCGGGGTGGAGAAAATCCTAGCTCTGCACAAGGGGGATTG
TCGTACGAGGTGTATATGACGAGAATGGGTTTCTGTACTTGGGGCAAGCC
TCAAGGAATTTTCACACCCAGTACCAGCGGCATCGGTTATCGGACTTTCG
TATAGAATTTATTTAGTGTTGACATTTGAGGGACATTGATGGAAAATTGG
TTTTTCTCAAATTTCTCGACGAAATCAAATCGGATTCCGAAAAAAATAAG
GTCGGCAAGGGCGCTGCCGGCCCAGTATCACTTTCACTTTTGCCGAATTT
GGAGGTATAGTTCCGAATGGCTGCGAAAGCGCAGGACAAATATAAAAGCT
GGGCTTGGCTGGCCCAGCTCGTATCATATGTACATCGGATTCAACGATAT
TTGTGTACCAGGTACCACTTGGTACCTAAATAGACGTACCTTTTGTATAC
TAATACTTGCCGTACAAACGATACCTATATGCCGGGACAGAGGAGGTCTC
TCTGGTACTGACGAAAGTTTGGGCTGAAAAGAGCATCCCAATACCTCAAT
ACCTATTGTCTAACGCCGGTAAGCATTTGGCCGATCAGTGGGCGTCTCTG
TCATATAGGCTCCACAGCATGCACGCGCGTGACGGTGTCGAGGCTTCTGT
CCCGGTGAATGGCGATGTCTGCTTGCACCTTCTCGGTTTGGGATGTCACC
GAACGGATGAGCTAAATCTTGGAACGCATCAACGAGCGAGAGCGGAAACA
CGTAACGAAAATTTTGCAGGAAATCATGGAACGACGTATTTGAGGAAAAT
GATGGCACAGACCAAGTCATGCAACAAATGAACGAGCTAGCGAAAACACC
GGACGAACGAACATTTGCAGGAGATAATGATCGTGGAGCGCACGAGGGAG
CGGCGCAAGAGCCTGATGAAGGAGAGGGCCAAGGGCCAGGCGGTTATCCA
GTACCTCACCCAGCTTCACAGGGAGGAGCGGATCAGGAGCAACTTTCTAC
GCGCGAAGGGAAACATTCTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10197:1029..4998-

>mRNA_M-pyrifera_M_contig10197.424.1 ID=mRNA_M-pyrifera_M_contig10197.424.1|Name=mRNA_M-pyrifera_M_contig10197.424.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2532bp|location=Sequence derived from alignment at M-pyrifera_M_contig10197:1029..4998- (Macrocystis pyrifera P11B4 male)
AGGTCTAGCTACACTCTGCTGCCGCCCGGTTACCTCGAGAGTCGCGGCGG
CACCGTCCGAAAGCCGCCCTCGAAGGGAGTACCCCCTAACGGGATAGCTG
CAGGCGGTGTTGCCGGTGCCGCTTCGACCCCGGCTAGCGGCTCCATTGCT
GCTGTTACGGCTTCCCCGGCTGCAACCGCCGCCGCCGCCGCCGCTGCTAC
CGCCGCTGACATGGCGCCTAACAGGTCTAGACGGTGGCTGCTAACGGATG
ATCAAGTTTTGGACGACATCAAGTTTATGAGGGTGAGGGGGATGAGCCGC
AAGGTGGTCTTGAGGTCTAGCTACACTCTGCTGCCGCCCGGTTACCTCGA
GAGTCGCGGCGGCACCGTCCGAAAGCCGCCCTCGAAGGGAGTACCCCCTA
ACGGGATAGCTGCAGGCGGTGTTGCCGGTGCCGCTTCGACCCCGGCTAGC
GGCTCCATTGCTGCTGTTACGGCTTCCCCGGCTGCAACCGCCGCCGCCGC
CGCCGCTGCTACCGCCGCTGACATGGCGCCTAACAGGTCTAGACGGTGGC
TGCTAACGGATGATCAAGTTTTGGACGACATCAAGTTTATGAGGGTGAGG
GGGATGAGCCGCAAGGTGGTCTTGACAACAACAAAAAGAACGACACCGTC
TCTCCATTTTCGAGCTTCAGACAGACGGGGGGGGGGGGGGTCGACTAAAA
CCCAAGTAAAACCAAACCTTGAAAAAGTATCGCTTTTCACAACAACAAAA
AGAACGACACCGTCTCTCCATTTTCGAGCTTCAGACAGACGGGGGGGGGG
GGGGTCGACTAAAACCCAAGTAAAACCAAACCTTGAAAAAGTATCGCTTT
TCATCAAGAAGCCGCCACCTGAAGAGCCAGAGGTGGACCCGCGGCTAACC
CCGTCCGAAAAAGAATGGTTAAAGGCGGCGAGGGAGGAGGAAGCCCAGGA
GAAGGAGTCGGCCGCAGAGTCAGCCAAGAACCTCGAAGCCGCCGCCGGCG
ACGAGGAGGGTGAGGGAGGGGAGGGGGGTGCGGAGGCTGGAGGTGGGGGT
GAGAGTGTTGCCGCGGTGGTGGACAAGAAGGGGGTCGGGGTTGGGGATGC
TGCTGGTGCCGCTAGTGCTTGCGGTTCTGCTACTAGTGCTGCCACTGCTA
ACGCTGGCGGTACTTATTCCGGAAAAGGCAAGGGGAAGGCGGTTCAGGGT
GCCCCCACCACCTCCACCGCCAACCCCACCACCACCAATACGGGGGTAGT
AGTCGGCGGGGGTAATGCTGAAGGAGGCGTTGGTTCGGTGGCGGCGACGG
CGGCGGAGGCGTCGGATAGCGCGGGGGGGGCGATGGTGGTGGTGGCGGGA
GCGGGGGCGGGGGCGGGGGCGGGAGGGAGGGAGGGGGCGAATGGAGGAGG
CACGGCCGGGGTGGAAAAATTGAGAGGGAAGGATGGACAGGTGGTGGAGG
CGGGCGGGAAGGGGGAAGGGCCGCCACCAGTGCGGTGGAGCCCCAAGCAG
CTGACGGAGTTCGACGAAAAGAGAGACGCTTTGGAGTTGAAGATCAAGAA
GCCGCCACCTGAAGAGCCAGAGGTGGACCCGCGGCTAACCCCGTCCGAAA
AAGAATGGTTAAAGGCGGCGAGGGAGGAGGAAGCCCAGGAGAAGGAGTCG
GCCGCAGAGTCAGCCAAGAACCTCGAAGCCGCCGCCGGCGACGAGGAGGG
TGAGGGAGGGGAGGGGGGTGCGGAGGCTGGAGGTGGGGGTGAGAGTGTTG
CCGCGGTGGTGGACAAGAAGGGGGTCGGGGTTGGGGATGCTGCTGGTGCC
GCTAGTGCTTGCGGTTCTGCTACTAGTGCTGCCACTGCTAACGCTGGCGG
TACTTATTCCGGAAAAGGCAAGGGGAAGGCGGTTCAGGGTGCCCCCACCA
CCTCCACCGCCAACCCCACCACCACCAATACGGGGGTAGTAGTCGGCGGG
GGTAATGCTGAAGGAGGCGTTGGTTCGGTGGCGGCGACGGCGGCGGAGGC
GTCGGATAGCGCGGGGGGGGCGATGGTGGTGGTGGCGGGAGCGGGGGCGG
GGGCGGGGGCGGGAGGGAGGGAGGGGGCGAATGGAGGAGGCACGGCCGGG
GTGGAAAAATTGAGAGGGAAGGATGGACAGGTGGTGGAGGCGGGCGGGAA
GGGGGAAGGGCCGCCACCAGTGCGGTGGAGCCCCAAGCAGCTGACGGAGT
TCGACGAAAAGAGAGACGCTTTGGAGTTGAAGGAGATAATGATCGTGGAG
CGCACGAGGGAGCGGCGCAAGAGCCTGATGAAGGAGAGGGCCAAGGGCCA
GGCGGTTATCCAGTACCTCACCCAGCTTCACAGGGAGGAGCGGATCAGGA
GCAACTTTCTACGCGCGAAGGGAAACATTCTTGAGATAATGATCGTGGAG
CGCACGAGGGAGCGGCGCAAGAGCCTGATGAAGGAGAGGGCCAAGGGCCA
GGCGGTTATCCAGTACCTCACCCAGCTTCACAGGGAGGAGCGGATCAGGA
GCAACTTTCTACGCGCGAAGGGAAACATTCTT
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