mRNA_M-pyrifera_M_contig101932.421.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101932.421.1
Unique NamemRNA_M-pyrifera_M_contig101932.421.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A8B2NPA0_9HYPH (Ribosome-recycling factor n=2 Tax=Acuticoccus TaxID=1904377 RepID=A0A8B2NPA0_9HYPH)

HSP 1 Score: 56.6 bits (135), Expect = 2.880e-8
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   19 VDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            VD+ +L  R++ A+G L+ ELSG+R G  SASML+ V VEAYG   PL  +AT  V
Sbjct:    3 VDLDDLKRRMDGAIGVLKTELSGLRTGRASASMLEPVQVEAYGTHMPLNQVATVSV 58          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A1M3KS18_9HYPH (Ribosome-recycling factor n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1M3KS18_9HYPH)

HSP 1 Score: 56.2 bits (134), Expect = 4.490e-8
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLAT 177
            MA+    D++E+  R++K++  L  EL G+R G  SAS+L+ V+VEAYG   PL  +AT
Sbjct:    1 MAAPPTFDLNEMKTRMQKSIASLRDELQGLRTGRASASLLEPVMVEAYGTRMPLNQVAT 59          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A349MKQ7_9PROT (Ribosome-recycling factor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A349MKQ7_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 6.050e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query:   25 VSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            +  +  R++KA+G L  ELSG+R G  S S+L+H+LVEAYG   PL  LA   V
Sbjct:    6 LQSMDARMKKAVGALREELSGIRTGRASTSLLEHILVEAYGTPTPLNQLAAINV 59          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: UPI00096B9EE4 (ribosome recycling factor n=1 Tax=Salaquimonas pukyongi TaxID=2712698 RepID=UPI00096B9EE4)

HSP 1 Score: 55.8 bits (133), Expect = 6.210e-8
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    7 SDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            S+D +D ++++ R+E A+  L+ +L+G+R G  SAS+LD V+VEAYG   P+  + T  V
Sbjct:    2 SEDAIDFNDINKRMEGAISSLKNDLAGLRTGRASASLLDPVMVEAYGQSMPINQVGTVNV 61          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A8J6IG77_9PROT (Ribosome-recycling factor n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6IG77_9PROT)

HSP 1 Score: 55.5 bits (132), Expect = 8.580e-8
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            DV++++ R+E ALG L+ E  G+R G  SAS+LD+V VEAYGA+ PL  + +  V
Sbjct:    6 DVNDINRRMEGALGALKHEFGGLRTGRASASLLDNVTVEAYGAQTPLSQIGSVNV 60          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A355WF05_9RHOB (Ribosome recycling factor (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A355WF05_9RHOB)

HSP 1 Score: 53.1 bits (126), Expect = 9.340e-8
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            MA D  +D+ +L  R++ AL  L  E S +R G  +ASMLD V+V+AYGA  P+  + T  V
Sbjct:    1 MADDIEIDLDDLERRMDGALAALRSEFSSLRTGRATASMLDPVMVDAYGAMMPINQVGTVNV 62          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A1M7U0I5_9RHOB (Ribosome-recycling factor n=1 Tax=Oceanicella actignis TaxID=1189325 RepID=A0A1M7U0I5_9RHOB)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query:    1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            M  D  +D  +L  R++ AL  L+ E + +R G  SASMLD++LV+AYGA  P+  +AT  V
Sbjct:    1 MTEDIDIDTDDLQRRMDGALAALKAEFASLRTGRASASMLDNILVDAYGAPTPINQVATVNV 62          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: UPI0015EF5DCA (ribosome recycling factor n=2 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=UPI0015EF5DCA)

HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:    7 SDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            +DD  D+ +L  R++ A+   + ELSG+R G  SAS+LD ++VEAYG+  PL  +AT  V
Sbjct:    2 ADDEFDLGDLKRRMQGAISVFKNELSGLRTGRASASLLDPIVVEAYGSTMPLNQVATVSV 61          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: RRF_XANP2 (Ribosome-recycling factor n=8 Tax=Xanthobacteraceae TaxID=335928 RepID=RRF_XANP2)

HSP 1 Score: 54.7 bits (130), Expect = 1.700e-7
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            D+S+L  R++ A+G L  EL G+R G  SAS+LD + +EAYGA  PL  +AT  V
Sbjct:    7 DMSDLKRRMQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSV 61          
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match: A0A1F4Y3M1_9BACT (Ribosome-recycling factor n=1 Tax=Candidatus Adlerbacteria bacterium RIFOXYC1_FULL_48_26 TaxID=1797247 RepID=A0A1F4Y3M1_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 2.260e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query:   22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
            D      +L+K   HL+ ELSG+R G  S+S+LD V VE+YGA  P+  +AT GV
Sbjct:    4 DFKPFDEKLQKTEEHLKTELSGIRTGRASSSILDTVTVESYGARMPINNVATIGV 58          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B2NPA0_9HYPH2.880e-851.79Ribosome-recycling factor n=2 Tax=Acuticoccus TaxI... [more]
A0A1M3KS18_9HYPH4.490e-844.07Ribosome-recycling factor n=2 Tax=Hyphomicrobiales... [more]
A0A349MKQ7_9PROT6.050e-848.15Ribosome-recycling factor n=1 Tax=Alphaproteobacte... [more]
UPI00096B9EE46.210e-841.67ribosome recycling factor n=1 Tax=Salaquimonas puk... [more]
A0A8J6IG77_9PROT8.580e-849.09Ribosome-recycling factor n=1 Tax=Euryhalocaulis s... [more]
A0A355WF05_9RHOB9.340e-843.55Ribosome recycling factor (Fragment) n=1 Tax=Rhodo... [more]
A0A1M7U0I5_9RHOB1.220e-743.55Ribosome-recycling factor n=1 Tax=Oceanicella acti... [more]
UPI0015EF5DCA1.220e-745.00ribosome recycling factor n=2 Tax=Pleomorphomonada... [more]
RRF_XANP21.700e-749.09Ribosome-recycling factor n=8 Tax=Xanthobacteracea... [more]
A0A1F4Y3M1_9BACT2.260e-747.27Ribosome-recycling factor n=1 Tax=Candidatus Adler... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101932contigM-pyrifera_M_contig101932:3..188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.0343547-CDS-M-pyrifera_M_contig101932:2..1881622815520.0343547-CDS-M-pyrifera_M_contig101932:2..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101932 3..188 -
1692277447.4213932-CDS-M-pyrifera_M_contig101932:2..1881692277447.4213932-CDS-M-pyrifera_M_contig101932:2..188Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101932 3..188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101932.421.1prot_M-pyrifera_M_contig101932.421.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101932 3..188 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101932.421.1

>prot_M-pyrifera_M_contig101932.421.1 ID=prot_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGA
EQPLKTLATSGV
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mRNA from alignment at M-pyrifera_M_contig101932:3..188-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101932.421.1 ID=mRNA_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig101932:3..188- (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGATGACGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGA GAAGGCATTGGGCCATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCG CCCCGAGCGCGAGCATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCG GAGCAGCCGCTCAAGACTCTTGCGACGAGTGGGGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101932:3..188-

>mRNA_M-pyrifera_M_contig101932.421.1 ID=mRNA_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig101932:3..188- (Macrocystis pyrifera P11B4 male)
ATGGCGAGCGATGACGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGA
GAAGGCATTGGGCCATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCG
CCCCGAGCGCGAGCATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCG
GAGCAGCCGCTCAAGACTCTTGCGACGAGTGGGGTTATGGCGAGCGATGA
CGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGAGAAGGCATTGGGCC
ATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCGCCCCGAGCGCGAGC
ATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCGGAGCAGCCGCTCAA
GACTCTTGCGACGAGTGGGGTT
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