Homology
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A8B2NPA0_9HYPH (Ribosome-recycling factor n=2 Tax=Acuticoccus TaxID=1904377 RepID=A0A8B2NPA0_9HYPH)
HSP 1 Score: 56.6 bits (135), Expect = 2.880e-8
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 19 VDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
VD+ +L R++ A+G L+ ELSG+R G SASML+ V VEAYG PL +AT V
Sbjct: 3 VDLDDLKRRMDGAIGVLKTELSGLRTGRASASMLEPVQVEAYGTHMPLNQVATVSV 58
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A1M3KS18_9HYPH (Ribosome-recycling factor n=2 Tax=Hyphomicrobiales TaxID=356 RepID=A0A1M3KS18_9HYPH)
HSP 1 Score: 56.2 bits (134), Expect = 4.490e-8
Identity = 26/59 (44.07%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLAT 177
MA+ D++E+ R++K++ L EL G+R G SAS+L+ V+VEAYG PL +AT
Sbjct: 1 MAAPPTFDLNEMKTRMQKSIASLRDELQGLRTGRASASLLEPVMVEAYGTRMPLNQVAT 59
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A349MKQ7_9PROT (Ribosome-recycling factor n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A349MKQ7_9PROT)
HSP 1 Score: 55.8 bits (133), Expect = 6.050e-8
Identity = 26/54 (48.15%), Postives = 35/54 (64.81%), Query Frame = 1
Query: 25 VSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
+ + R++KA+G L ELSG+R G S S+L+H+LVEAYG PL LA V
Sbjct: 6 LQSMDARMKKAVGALREELSGIRTGRASTSLLEHILVEAYGTPTPLNQLAAINV 59
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
UPI00096B9EE4 (ribosome recycling factor n=1 Tax=Salaquimonas pukyongi TaxID=2712698 RepID=UPI00096B9EE4)
HSP 1 Score: 55.8 bits (133), Expect = 6.210e-8
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 7 SDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
S+D +D ++++ R+E A+ L+ +L+G+R G SAS+LD V+VEAYG P+ + T V
Sbjct: 2 SEDAIDFNDINKRMEGAISSLKNDLAGLRTGRASASLLDPVMVEAYGQSMPINQVGTVNV 61
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A8J6IG77_9PROT (Ribosome-recycling factor n=1 Tax=Euryhalocaulis sp. TaxID=2744307 RepID=A0A8J6IG77_9PROT)
HSP 1 Score: 55.5 bits (132), Expect = 8.580e-8
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
DV++++ R+E ALG L+ E G+R G SAS+LD+V VEAYGA+ PL + + V
Sbjct: 6 DVNDINRRMEGALGALKHEFGGLRTGRASASLLDNVTVEAYGAQTPLSQIGSVNV 60
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A355WF05_9RHOB (Ribosome recycling factor (Fragment) n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A355WF05_9RHOB)
HSP 1 Score: 53.1 bits (126), Expect = 9.340e-8
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
MA D +D+ +L R++ AL L E S +R G +ASMLD V+V+AYGA P+ + T V
Sbjct: 1 MADDIEIDLDDLERRMDGALAALRSEFSSLRTGRATASMLDPVMVDAYGAMMPINQVGTVNV 62
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A1M7U0I5_9RHOB (Ribosome-recycling factor n=1 Tax=Oceanicella actignis TaxID=1189325 RepID=A0A1M7U0I5_9RHOB)
HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 1
Query: 1 MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
M D +D +L R++ AL L+ E + +R G SASMLD++LV+AYGA P+ +AT V
Sbjct: 1 MTEDIDIDTDDLQRRMDGALAALKAEFASLRTGRASASMLDNILVDAYGAPTPINQVATVNV 62
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
UPI0015EF5DCA (ribosome recycling factor n=2 Tax=Pleomorphomonadaceae TaxID=2843308 RepID=UPI0015EF5DCA)
HSP 1 Score: 55.1 bits (131), Expect = 1.220e-7
Identity = 27/60 (45.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 7 SDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
+DD D+ +L R++ A+ + ELSG+R G SAS+LD ++VEAYG+ PL +AT V
Sbjct: 2 ADDEFDLGDLKRRMQGAISVFKNELSGLRTGRASASLLDPIVVEAYGSTMPLNQVATVSV 61
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
RRF_XANP2 (Ribosome-recycling factor n=8 Tax=Xanthobacteraceae TaxID=335928 RepID=RRF_XANP2)
HSP 1 Score: 54.7 bits (130), Expect = 1.700e-7
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
D+S+L R++ A+G L EL G+R G SAS+LD + +EAYGA PL +AT V
Sbjct: 7 DMSDLKRRMQGAVGVLRDELGGLRTGRASASLLDPITIEAYGARMPLNQVATVSV 61
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Match:
A0A1F4Y3M1_9BACT (Ribosome-recycling factor n=1 Tax=Candidatus Adlerbacteria bacterium RIFOXYC1_FULL_48_26 TaxID=1797247 RepID=A0A1F4Y3M1_9BACT)
HSP 1 Score: 54.3 bits (129), Expect = 2.260e-7
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 22 DVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGAEQPLKTLATSGV 186
D +L+K HL+ ELSG+R G S+S+LD V VE+YGA P+ +AT GV
Sbjct: 4 DFKPFDEKLQKTEEHLKTELSGIRTGRASSSILDTVTVESYGARMPINNVATIGV 58
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101932.421.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90 )
Total hits: 25
0 1 Expect = 2.88e-8 / Id = 51.79 Expect = 4.49e-8 / Id = 44.07 Expect = 6.05e-8 / Id = 48.15 Expect = 6.21e-8 / Id = 41.67 Expect = 8.58e-8 / Id = 49.09 Expect = 9.34e-8 / Id = 43.55 Expect = 1.22e-7 / Id = 43.55 Expect = 1.22e-7 / Id = 45.00 Expect = 1.70e-7 / Id = 49.09 Expect = 2.26e-7 / Id = 47.27 Sequence A0A8B2NPA0_9HYPH A0A1M3KS18_9HYPH A0A349MKQ7_9PROT UPI00096B9EE4 A0A8J6IG77_9PROT A0A355WF05_9RHOB A0A1M7U0I5_9RHOB UPI0015EF5DCA RRF_XANP2 A0A1F4Y3M1_9BACT
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101932.421.1
>prot_M-pyrifera_M_contig101932.421.1 ID=prot_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=62bp
MASDDVVDVSELSVRLEKALGHLEVELSGVRDGAPSASMLDHVLVEAYGA EQPLKTLATSGV back to top mRNA from alignment at M-pyrifera_M_contig101932:3..188-
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101932.421.1 ID=mRNA_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=186bp|location=Sequence derived from alignment at M-pyrifera_M_contig101932:3..188- (Macrocystis pyrifera P11B4 male)ATGGCGAGCGATGACGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGA
GAAGGCATTGGGCCATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCG
CCCCGAGCGCGAGCATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCG
GAGCAGCCGCTCAAGACTCTTGCGACGAGTGGGGTT back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101932:3..188-
>mRNA_M-pyrifera_M_contig101932.421.1 ID=mRNA_M-pyrifera_M_contig101932.421.1|Name=mRNA_M-pyrifera_M_contig101932.421.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig101932:3..188- (Macrocystis pyrifera P11B4 male) ATGGCGAGCGATGACGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGA GAAGGCATTGGGCCATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCG CCCCGAGCGCGAGCATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCG GAGCAGCCGCTCAAGACTCTTGCGACGAGTGGGGTTATGGCGAGCGATGA CGTGGTCGATGTTTCTGAGTTGTCTGTTCGGTTGGAGAAGGCATTGGGCC ATTTGGAGGTGGAGTTGTCCGGAGTGCGTGATGGCGCCCCGAGCGCGAGC ATGCTGGACCACGTGTTGGTGGAGGCGTACGGCGCGGAGCAGCCGCTCAA GACTCTTGCGACGAGTGGGGTT back to top