mRNA_M-pyrifera_M_contig101915.413.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101915.413.1
Unique NamemRNA_M-pyrifera_M_contig101915.413.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A813AS11_9DINO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AS11_9DINO)

HSP 1 Score: 288 bits (736), Expect = 1.360e-90
Identity = 136/222 (61.26%), Postives = 175/222 (78.83%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            KRF   + R  D+ L+K SR       + ++ +II +A+VQA+ATGNWSL+RF+M++AG+TQQ++R SY+S++G+M R+ SQFEKTRK AGPRALQPSQWGM+CPSDTPEGEACGL K+LALLTHVT D +  PV RLC DLG+ED   L GEE+NAG FL+F+NG ++G HRRPH  A R+R  RR GI+ E VSVY+H +  +VH++TDGGRVCRPLI+V
Sbjct:  368 KRFNGELSRQADNVLSKPSRASSFDVVKHVRPDIITNAMVQAIATGNWSLKRFKMEQAGMTQQVTRHSYLSAMGLMARVQSQFEKTRKAAGPRALQPSQWGMLCPSDTPEGEACGLAKSLALLTHVTTDEEPAPVHRLCFDLGMEDIEMLAGEEINAGNFLVFLNGLLVGAHRRPHEFARRMRLLRRLGIIGEFVSVYLHEDQHSVHISTDGGRVCRPLIIV 589          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 289 bits (740), Expect = 9.550e-87
Identity = 142/222 (63.96%), Postives = 174/222 (78.38%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            KRF  ++RR  D+ L+K +R         ++ + I   + QAL+TGNW+L+RFRM+RAG+TQQLSRLSYIS+LGMMTR+ SQFEKTRKV+GPRALQPSQWGM+CPSDTPEGEACGLVKNLALL HVT D D  PV RLC D+GVED   L GEEL+ GA+L+F+NG +LG HRRP+  A   R  RR GIL E VSVYVH  LRAV++A+DGGR+CRP+++V
Sbjct:  675 KRFNSDLRRAADAVLSKPNRAAAFDVINSVRTDTITMGMTQALSTGNWTLKRFRMERAGVTQQLSRLSYISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALLAHVTSDRDPEPVRRLCFDMGVEDAECLCGEELHGGAYLVFLNGLLLGAHRRPYDFAKAFRIFRRAGILGEFVSVYVHDGLRAVNIASDGGRICRPVVVV 896          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1CG01_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG01_9STRA)

HSP 1 Score: 275 bits (704), Expect = 2.900e-84
Identity = 133/222 (59.91%), Postives = 169/222 (76.13%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            K F   + R  D  L K++R  P  A  ++++++I + +   L+TGNW L RF+MDR G+TQ +SRLSY+S+LGMMTR+ SQF+K+ KV+GPRALQPSQWGM+CPS+TPEGE CGLVKNLALLTHVT D D  PV RL VDLG+ED   L GEE+N+ A+L+F+NG I+G HR PH  A R+R  RR G+L E+VSVYVH   RAVH+A+D GRVCRPLI+V
Sbjct:   59 KSFNKELTRQADGALKKKARAMPFDALMYIREDMITNKMETVLSTGNWKLSRFKMDRQGVTQLVSRLSYLSALGMMTRVTSQFQKSVKVSGPRALQPSQWGMLCPSETPEGEQCGLVKNLALLTHVTTDEDPTPVRRLAVDLGMEDTELLGGEEINSSAYLVFINGLIMGVHRHPHRFAERLRALRRVGLLGEYVSVYVHDGQRAVHLASDSGRVCRPLIIV 280          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 265 bits (677), Expect = 6.230e-84
Identity = 128/223 (57.40%), Postives = 170/223 (76.23%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            KRF   + R  D  L+K +R       + ++ + I    V  +A+GNW L+RF+M+RAG++Q L+RLSY+S +GMMTR+NSQFEK++KV+GPRALQPSQWG++CP+DTPEGEACGLVKNLALL HVT DA++ PV R C+DLGVED   L G E++AG AFL+F+NG ++G HRRP     R R  RRQG+++E VSVY+HA  RAV++A DGGR+CRPL++V
Sbjct:    3 KRFNAELARQADMVLSKANRAAAFDIVKTIRPDTIAQGFVHCIASGNWVLKRFKMERAGVSQVLNRLSYMSCVGMMTRVNSQFEKSQKVSGPRALQPSQWGVLCPADTPEGEACGLVKNLALLAHVTSDAEERPVLRACLDLGVEDVALLSGAEVHAGQAFLVFLNGLLIGAHRRPREFVRRFRFLRRQGLVTEFVSVYLHAPQRAVYLAADGGRLCRPLLVV 225          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S3VGN0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGN0_9STRA)

HSP 1 Score: 274 bits (700), Expect = 2.960e-83
Identity = 132/223 (59.19%), Postives = 170/223 (76.23%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELN-AGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            K F  +++R  D  L+K +R       + ++ + I   +  A+++GNW L+RFRMDRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RLC DLGVED   + G E+N AGA+L+F+NG ILG HRRP  L   +RT RRQG   E VS+Y+H   +++H++TDGGRVCRP+I+V
Sbjct:   88 KLFNKDLKRQADMVLSKANRAQAFDVVKCIRPDTITHGMSTAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCRDLGVEDVNMMTGNEINSAGAYLVFLNGLILGGHRRPRYLVKMLRTMRRQGQAGEFVSLYLHQGQKSIHISTDGGRVCRPMIIV 310          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.350e-82
Identity = 134/223 (60.09%), Postives = 168/223 (75.34%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            K F  N++R  D  L   +R       + ++ + I + +V A+++GNW L+RFR+DRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RLC+DLGVED   L G E+N+ GA+L+F+NG +LG H RP      +RT RRQG   E VSVY+H    AVH+ATDGGRVCRPLI+V
Sbjct:  582 KLFNANLKREADRVLRHTNRAQAFDVVKIIRPDTITNGMVHAISSGNWVLKRFRVDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCIDLGVEDVNMLTGNEINSMGAYLVFLNGLLLGAHTRPRQFVQDLRTMRRQGQAGEFVSVYLHEGQHAVHIATDGGRVCRPLIIV 804          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A1Z5KRH4_FISSO (DNA-directed RNA polymerase subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH4_FISSO)

HSP 1 Score: 275 bits (704), Expect = 3.920e-82
Identity = 137/222 (61.71%), Postives = 171/222 (77.03%), Query Frame = 1
Query:    7 FQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADD-GPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            F   ++R  D  L+K +R       + ++ + I + ++ A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL+H+T D DD  P+ RLC DLGVED   + G ELN+  AFL+F+NG ILG H RP  L   +R  RR+G+  E VSVY+H E RAVH+ATDGGRVCRPLI+V
Sbjct:  463 FNKELKRQADLVLSKPNRAEAFDVVKTIRPDTITNGMINAISTGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLSHITTDEDDTNPIERLCRDLGVEDVRRMSGNELNSKDAFLVFLNGLILGIHLRPLQLVEDLRKMRRRGLAGEFVSVYLHEEQRAVHIATDGGRVCRPLIIV 684          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 274 bits (701), Expect = 5.130e-82
Identity = 136/223 (60.99%), Postives = 170/223 (76.23%), Query Frame = 1
Query:    1 KRFQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            KR   +++RH DS L+K +R  P    + ++ + +    V AL+TGNW LRRFRMDRAG+TQ LSRLSYIS+LGMMTR+NS+FEKTRKV+GPRALQPSQWGM+CP+DTPEGEACGLVKNLALL HVT D D  P+ RLC DLGVED   + G ELN    +L+ VNG I+G H  P  LA R+R  RR+G + E VS+Y+H+  RAV++A+DGGRVCRPL++V
Sbjct:  383 KRMNADLKRHADSVLSKANRTKPFDIIKNIRTDTLTQGFVHALSTGNWVLRRFRMDRAGVTQVLSRLSYISALGMMTRLNSEFEKTRKVSGPRALQPSQWGMLCPADTPEGEACGLVKNLALLAHVTNDEDAAPIIRLCFDLGVEDVSYVSGAELNRQDVYLVIVNGLIIGIHPDPQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVV 605          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: B7FVD4_PHATC (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVD4_PHATC)

HSP 1 Score: 270 bits (691), Expect = 2.030e-80
Identity = 134/222 (60.36%), Postives = 170/222 (76.58%), Query Frame = 1
Query:    7 FQDNMRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVD-ADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 666
            F  +++R  D  L+K +R       + ++ + I + ++ A+ATGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D AD  P+ R+C DLGVED   + G E+N+  AFL+F+NG ILG H RP  L   +R  RR+G+  E VSVY+H E  AVH+ATDGGRVCRPL++V
Sbjct:  428 FNKDLKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIV 649          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1V6C3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA)

HSP 1 Score: 247 bits (630), Expect = 4.020e-80
Identity = 121/199 (60.80%), Postives = 152/199 (76.38%), Query Frame = 1
Query:   46 NKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGG 639
            +K +R       + ++ + I   +V A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RL  DLGVED   L G E+++ G FL+F+NG ILG H +PH     +RT RR+G+  E VSVY+H   RAVH+ATDGG
Sbjct:    1 SKPNRAQAFDVVKTIRPDTITYGMVTAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTQPIRRLSRDLGVEDVKRLTGNEIHSRGGFLVFLNGLILGLHTKPHEFVASLRTMRRRGLTGEFVSVYLHEGQRAVHIATDGG 199          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813AS11_9DINO1.360e-9061.26DNA-directed RNA polymerase (Fragment) n=1 Tax=Sym... [more]
A0A5A8CMB6_CAFRO9.550e-8763.96DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A7S1CG01_9STRA2.900e-8459.91DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]
A0A7S4DBE3_HETAK6.230e-8457.40DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A7S3VGN0_9STRA2.960e-8359.19DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S4QYU8_9STRA1.350e-8260.09DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
A0A1Z5KRH4_FISSO3.920e-8261.71DNA-directed RNA polymerase subunit beta n=2 Tax=F... [more]
A0A6U4JF41_9STRA5.130e-8260.99DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
B7FVD4_PHATC2.030e-8060.36DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S1V6C3_9STRA4.020e-8060.80DNA-directed RNA polymerase (Fragment) n=1 Tax=Gra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101915contigM-pyrifera_M_contig101915:1..666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue6.6e-71
Seed eggNOG ortholog2850.Phatr54289
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
EggNOG OGs2XE63@2836,COG0085@1,KOG0215@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size666
Cds size648
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.5326846-CDS-M-pyrifera_M_contig101915:0..6481622815519.5326846-CDS-M-pyrifera_M_contig101915:0..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101915 1..648 -
1692277447.1918447-CDS-M-pyrifera_M_contig101915:0..6481692277447.1918447-CDS-M-pyrifera_M_contig101915:0..648Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101915 1..648 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.5473528-UTR-M-pyrifera_M_contig101915:648..6661622815519.5473528-UTR-M-pyrifera_M_contig101915:648..666Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101915 649..666 -
1692277447.2065015-UTR-M-pyrifera_M_contig101915:648..6661692277447.2065015-UTR-M-pyrifera_M_contig101915:648..666Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101915 649..666 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101915.413.1prot_M-pyrifera_M_contig101915.413.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101915 1..648 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101915.413.1

>prot_M-pyrifera_M_contig101915.413.1 ID=prot_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMD
RAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPS
DTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELN
AGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAV
HVATDGGRVCRPLILV
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mRNA from alignment at M-pyrifera_M_contig101915:1..666-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101915.413.1 ID=mRNA_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig101915:1..666- (Macrocystis pyrifera P11B4 male)
AAGCGGTTCCAGGACAATATGAGAAGACACGTCGACTCGACGCTGAACAA GAGGTCCAGAGTGGGACCTGTGAAAGCGACGCAGTTTTTGCAGAAAAACA TCATCCGTGACGCACTCGTGCAGGCTCTTGCGACTGGGAACTGGTCCTTG CGCAGGTTTCGAATGGATCGAGCAGGCATCACGCAGCAGCTGAGCCGGCT GAGCTACATCTCGTCGCTCGGCATGATGACTCGCATCAACTCCCAGTTCG AAAAGACGAGGAAAGTAGCGGGACCGAGGGCATTGCAGCCGTCGCAGTGG GGCATGGTGTGTCCTTCAGATACGCCAGAAGGAGAGGCTTGTGGGCTGGT GAAGAACCTGGCGCTGCTCACGCACGTAACCGTCGATGCAGATGATGGTC CTGTCACGCGATTGTGTGTCGACTTGGGAGTGGAGGACTGTGGCGGGTTG ATGGGTGAGGAGCTCAACGCAGGAGCGTTTTTGATTTTTGTCAATGGCCG CATCCTAGGCTGTCATCGAAGACCACACGTGCTTGCACACCGAGTGCGAA CTGCCAGGCGGCAAGGCATCCTCAGCGAACACGTGAGTGTGTATGTCCAT GCAGAACTCCGTGCTGTGCATGTTGCAACGGACGGGGGAAGGGTTTGTCG GCCATTGATCCTTGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101915:1..666-

>mRNA_M-pyrifera_M_contig101915.413.1 ID=mRNA_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1296bp|location=Sequence derived from alignment at M-pyrifera_M_contig101915:1..666- (Macrocystis pyrifera P11B4 male)
ATGAGAAGACACGTCGACTCGACGCTGAACAAGAGGTCCAGAGTGGGACC
TGTGAAAGCGACGCAGTTTTTGCAGAAAAACATCATCCGTGACGCACTCG
TGCAGGCTCTTGCGACTGGGAACTGGTCCTTGCGCAGGTTTCGAATGGAT
CGAGCAGGCATCACGCAGCAGCTGAGCCGGCTGAGCTACATCTCGTCGCT
CGGCATGATGACTCGCATCAACTCCCAGTTCGAAAAGACGAGGAAAGTAG
CGGGACCGAGGGCATTGCAGCCGTCGCAGTGGGGCATGGTGTGTCCTTCA
GATACGCCAGAAGGAGAGGCTTGTGGGCTGGTGAAGAACCTGGCGCTGCT
CACGCACGTAACCGTCGATGCAGATGATGGTCCTGTCACGCGATTGTGTG
TCGACTTGGGAGTGGAGGACTGTGGCGGGTTGATGGGTGAGGAGCTCAAC
GCAGGAGCGTTTTTGATTTTTGTCAATGGCCGCATCCTAGGCTGTCATCG
AAGACCACACGTGCTTGCACACCGAGTGCGAACTGCCAGGCGGCAAGGCA
TCCTCAGCGAACACGTGAGTGTGTATGTCCATGCAGAACTCCGTGCTGTG
CATGTTGCAACGGACGGGGGAAGGGTTTGTCGGCCATTGATCCTTGTCAT
GAGAAGACACGTCGACTCGACGCTGAACAAGAGGTCCAGAGTGGGACCTG
TGAAAGCGACGCAGTTTTTGCAGAAAAACATCATCCGTGACGCACTCGTG
CAGGCTCTTGCGACTGGGAACTGGTCCTTGCGCAGGTTTCGAATGGATCG
AGCAGGCATCACGCAGCAGCTGAGCCGGCTGAGCTACATCTCGTCGCTCG
GCATGATGACTCGCATCAACTCCCAGTTCGAAAAGACGAGGAAAGTAGCG
GGACCGAGGGCATTGCAGCCGTCGCAGTGGGGCATGGTGTGTCCTTCAGA
TACGCCAGAAGGAGAGGCTTGTGGGCTGGTGAAGAACCTGGCGCTGCTCA
CGCACGTAACCGTCGATGCAGATGATGGTCCTGTCACGCGATTGTGTGTC
GACTTGGGAGTGGAGGACTGTGGCGGGTTGATGGGTGAGGAGCTCAACGC
AGGAGCGTTTTTGATTTTTGTCAATGGCCGCATCCTAGGCTGTCATCGAA
GACCACACGTGCTTGCACACCGAGTGCGAACTGCCAGGCGGCAAGGCATC
CTCAGCGAACACGTGAGTGTGTATGTCCATGCAGAACTCCGTGCTGTGCA
TGTTGCAACGGACGGGGGAAGGGTTTGTCGGCCATTGATCCTTGTC
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