prot_M-pyrifera_M_contig101915.413.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig101915.413.1
Unique Nameprot_M-pyrifera_M_contig101915.413.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length216
Homology
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A813AS11_9DINO (DNA-directed RNA polymerase (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AS11_9DINO)

HSP 1 Score: 282 bits (722), Expect = 1.310e-88
Identity = 133/214 (62.15%), Postives = 171/214 (79.91%), Query Frame = 0
Query:    3 RHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            R  D+ L+K SR       + ++ +II +A+VQA+ATGNWSL+RF+M++AG+TQQ++R SY+S++G+M R+ SQFEKTRK AGPRALQPSQWGM+CPSDTPEGEACGL K+LALLTHVT D +  PV RLC DLG+ED   L GEE+NAG FL+F+NG ++G HRRPH  A R+R  RR GI+ E VSVY+H +  +VH++TDGGRVCRPLI+V
Sbjct:  376 RQADNVLSKPSRASSFDVVKHVRPDIITNAMVQAIATGNWSLKRFKMEQAGMTQQVTRHSYLSAMGLMARVQSQFEKTRKAAGPRALQPSQWGMLCPSDTPEGEACGLAKSLALLTHVTTDEEPAPVHRLCFDLGMEDIEMLAGEEINAGNFLVFLNGLLVGAHRRPHEFARRMRLLRRLGIIGEFVSVYLHEDQHSVHISTDGGRVCRPLIIV 589          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A5A8CMB6_CAFRO (DNA-directed RNA polymerase subunit beta n=3 Tax=Sar TaxID=2698737 RepID=A0A5A8CMB6_CAFRO)

HSP 1 Score: 283 bits (724), Expect = 1.170e-84
Identity = 139/216 (64.35%), Postives = 170/216 (78.70%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            +RR  D+ L+K +R         ++ + I   + QAL+TGNW+L+RFRM+RAG+TQQLSRLSYIS+LGMMTR+ SQFEKTRKV+GPRALQPSQWGM+CPSDTPEGEACGLVKNLALL HVT D D  PV RLC D+GVED   L GEEL+ GA+L+F+NG +LG HRRP+  A   R  RR GIL E VSVYVH  LRAV++A+DGGR+CRP+++V
Sbjct:  681 LRRAADAVLSKPNRAAAFDVINSVRTDTITMGMTQALSTGNWTLKRFRMERAGVTQQLSRLSYISALGMMTRVTSQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALLAHVTSDRDPEPVRRLCFDMGVEDAECLCGEELHGGAYLVFLNGLLLGAHRRPYDFAKAFRIFRRAGILGEFVSVYVHDGLRAVNIASDGGRICRPVVVV 896          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1CG01_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CG01_9STRA)

HSP 1 Score: 272 bits (696), Expect = 3.410e-83
Identity = 131/214 (61.21%), Postives = 166/214 (77.57%), Query Frame = 0
Query:    3 RHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            R  D  L K++R  P  A  ++++++I + +   L+TGNW L RF+MDR G+TQ +SRLSY+S+LGMMTR+ SQF+K+ KV+GPRALQPSQWGM+CPS+TPEGE CGLVKNLALLTHVT D D  PV RL VDLG+ED   L GEE+N+ A+L+F+NG I+G HR PH  A R+R  RR G+L E+VSVYVH   RAVH+A+D GRVCRPLI+V
Sbjct:   67 RQADGALKKKARAMPFDALMYIREDMITNKMETVLSTGNWKLSRFKMDRQGVTQLVSRLSYLSALGMMTRVTSQFQKSVKVSGPRALQPSQWGMLCPSETPEGEQCGLVKNLALLTHVTTDEDPTPVRRLAVDLGMEDTELLGGEEINSSAYLVFINGLIMGVHRHPHRFAERLRALRRVGLLGEYVSVYVHDGQRAVHLASDSGRVCRPLIIV 280          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S3VGN0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VGN0_9STRA)

HSP 1 Score: 271 bits (692), Expect = 3.410e-82
Identity = 130/217 (59.91%), Postives = 167/217 (76.96%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELN-AGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            ++R  D  L+K +R       + ++ + I   +  A+++GNW L+RFRMDRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RLC DLGVED   + G E+N AGA+L+F+NG ILG HRRP  L   +RT RRQG   E VS+Y+H   +++H++TDGGRVCRP+I+V
Sbjct:   94 LKRQADMVLSKANRAQAFDVVKCIRPDTITHGMSTAISSGNWVLKRFRMDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCRDLGVEDVNMMTGNEINSAGAYLVFLNGLILGGHRRPRYLVKMLRTMRRQGQAGEFVSLYLHQGQKSIHISTDGGRVCRPMIIV 310          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4DBE3_HETAK (DNA-directed RNA polymerase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DBE3_HETAK)

HSP 1 Score: 260 bits (664), Expect = 4.480e-82
Identity = 125/215 (58.14%), Postives = 166/215 (77.21%), Query Frame = 0
Query:    3 RHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            R  D  L+K +R       + ++ + I    V  +A+GNW L+RF+M+RAG++Q L+RLSY+S +GMMTR+NSQFEK++KV+GPRALQPSQWG++CP+DTPEGEACGLVKNLALL HVT DA++ PV R C+DLGVED   L G E++AG AFL+F+NG ++G HRRP     R R  RRQG+++E VSVY+HA  RAV++A DGGR+CRPL++V
Sbjct:   11 RQADMVLSKANRAAAFDIVKTIRPDTIAQGFVHCIASGNWVLKRFKMERAGVSQVLNRLSYMSCVGMMTRVNSQFEKSQKVSGPRALQPSQWGVLCPADTPEGEACGLVKNLALLAHVTSDAEERPVLRACLDLGVEDVALLSGAEVHAGQAFLVFLNGLLIGAHRRPREFVRRFRFLRRQGLVTEFVSVYLHAPQRAVYLAADGGRLCRPLLVV 225          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A1Z5KRH4_FISSO (DNA-directed RNA polymerase subunit beta n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRH4_FISSO)

HSP 1 Score: 273 bits (698), Expect = 2.110e-81
Identity = 136/218 (62.39%), Postives = 170/218 (77.98%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADD-GPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            ++R  D  L+K +R       + ++ + I + ++ A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL+H+T D DD  P+ RLC DLGVED   + G ELN+  AFL+F+NG ILG H RP  L   +R  RR+G+  E VSVY+H E RAVH+ATDGGRVCRPLI+V
Sbjct:  467 LKRQADLVLSKPNRAEAFDVVKTIRPDTITNGMINAISTGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLSHITTDEDDTNPIERLCRDLGVEDVRRMSGNELNSKDAFLVFLNGLILGIHLRPLQLVEDLRKMRRRGLAGEFVSVYLHEEQRAVHIATDGGRVCRPLIIV 684          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 273 bits (697), Expect = 4.720e-81
Identity = 131/217 (60.37%), Postives = 165/217 (76.04%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            ++R  D  L   +R       + ++ + I + +V A+++GNW L+RFR+DRAG+TQ LSRLSYIS+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RLC+DLGVED   L G E+N+ GA+L+F+NG +LG H RP      +RT RRQG   E VSVY+H    AVH+ATDGGRVCRPLI+V
Sbjct:  588 LKREADRVLRHTNRAQAFDVVKIIRPDTITNGMVHAISSGNWVLKRFRVDRAGVTQVLSRLSYISALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTAPIERLCIDLGVEDVNMLTGNEINSMGAYLVFLNGLLLGAHTRPRQFVQDLRTMRRQGQAGEFVSVYLHEGQHAVHIATDGGRVCRPLIIV 804          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 271 bits (693), Expect = 5.410e-81
Identity = 134/217 (61.75%), Postives = 167/217 (76.96%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            ++RH DS L+K +R  P    + ++ + +    V AL+TGNW LRRFRMDRAG+TQ LSRLSYIS+LGMMTR+NS+FEKTRKV+GPRALQPSQWGM+CP+DTPEGEACGLVKNLALL HVT D D  P+ RLC DLGVED   + G ELN    +L+ VNG I+G H  P  LA R+R  RR+G + E VS+Y+H+  RAV++A+DGGRVCRPL++V
Sbjct:  389 LKRHADSVLSKANRTKPFDIIKNIRTDTLTQGFVHALSTGNWVLRRFRMDRAGVTQVLSRLSYISALGMMTRLNSEFEKTRKVSGPRALQPSQWGMLCPADTPEGEACGLVKNLALLAHVTNDEDAAPIIRLCFDLGVEDVSYVSGAELNRQDVYLVIVNGLIIGIHPDPQDLARRLRFLRRRGCVGEFVSIYLHSGKRAVYIASDGGRVCRPLLVV 605          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: A0A7S1V6C3_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V6C3_9STRA)

HSP 1 Score: 247 bits (630), Expect = 3.210e-80
Identity = 121/199 (60.80%), Postives = 152/199 (76.38%), Query Frame = 0
Query:   10 NKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELNA-GAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGG 207
            +K +R       + ++ + I   +V A++TGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTR+NSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D D  P+ RL  DLGVED   L G E+++ G FL+F+NG ILG H +PH     +RT RR+G+  E VSVY+H   RAVH+ATDGG
Sbjct:    1 SKPNRAQAFDVVKTIRPDTITYGMVTAISTGNWVLKRFRMDRAGVTQVLSRLSYVSALGMMTRVNSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEDTQPIRRLSRDLGVEDVKRLTGNEIHSRGGFLVFLNGLILGLHTKPHEFVASLRTMRRRGLTGEFVSVYLHEGQRAVHIATDGG 199          
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Match: B7FVD4_PHATC (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FVD4_PHATC)

HSP 1 Score: 268 bits (684), Expect = 1.510e-79
Identity = 133/218 (61.01%), Postives = 168/218 (77.06%), Query Frame = 0
Query:    1 MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMDRAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPSDTPEGEACGLVKNLALLTHVTVD-ADDGPVTRLCVDLGVEDCGGLMGEELNAG-AFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAVHVATDGGRVCRPLILV 216
            ++R  D  L+K +R       + ++ + I + ++ A+ATGNW L+RFRMDRAG+TQ LSRLSY+S+LGMMTRINSQFEKTRKV+GPR+LQPSQWGM+CP+DTPEGEACGLVKNLALL H+T D AD  P+ R+C DLGVED   + G E+N+  AFL+F+NG ILG H RP  L   +R  RR+G+  E VSVY+H E  AVH+ATDGGRVCRPL++V
Sbjct:  432 LKRQADLVLSKPNRTQAFDVVKTIRPDTITNGMINAIATGNWVLKRFRMDRAGVTQVLSRLSYMSALGMMTRINSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITTDEADTRPIERICRDLGVEDVKRMTGHEINSHQAFLVFLNGLILGVHTRPRELVRNLRKMRRRGLAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIV 649          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101915.413.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813AS11_9DINO1.310e-8862.15DNA-directed RNA polymerase (Fragment) n=1 Tax=Sym... [more]
A0A5A8CMB6_CAFRO1.170e-8464.35DNA-directed RNA polymerase subunit beta n=3 Tax=S... [more]
A0A7S1CG01_9STRA3.410e-8361.21DNA-directed RNA polymerase subunit beta n=1 Tax=B... [more]
A0A7S3VGN0_9STRA3.410e-8259.91DNA-directed RNA polymerase subunit beta n=1 Tax=C... [more]
A0A7S4DBE3_HETAK4.480e-8258.14DNA-directed RNA polymerase (Fragment) n=1 Tax=Het... [more]
A0A1Z5KRH4_FISSO2.110e-8162.39DNA-directed RNA polymerase subunit beta n=2 Tax=F... [more]
A0A7S4QYU8_9STRA4.720e-8160.37DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]
A0A6U4JF41_9STRA5.410e-8161.75DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S1V6C3_9STRA3.210e-8060.80DNA-directed RNA polymerase (Fragment) n=1 Tax=Gra... [more]
B7FVD4_PHATC1.510e-7961.01DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 56..120
e-value: 5.2E-21
score: 74.6
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..128
e-value: 3.0E-24
score: 87.7
NoneNo IPR availableGENE3D3.90.1070.20coord: 129..205
e-value: 2.8E-10
score: 41.6
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 29..216
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 14..215
IPR007646RNA polymerase Rpb2, domain 4PFAMPF04566RNA_pol_Rpb2_4coord: 156..216
e-value: 7.3E-22
score: 77.4
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 29..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101915contigM-pyrifera_M_contig101915:1..648 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101915.413.1mRNA_M-pyrifera_M_contig101915.413.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig101915 1..666 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig101915.413.1 ID=prot_M-pyrifera_M_contig101915.413.1|Name=mRNA_M-pyrifera_M_contig101915.413.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=216bp
MRRHVDSTLNKRSRVGPVKATQFLQKNIIRDALVQALATGNWSLRRFRMD
RAGITQQLSRLSYISSLGMMTRINSQFEKTRKVAGPRALQPSQWGMVCPS
DTPEGEACGLVKNLALLTHVTVDADDGPVTRLCVDLGVEDCGGLMGEELN
AGAFLIFVNGRILGCHRRPHVLAHRVRTARRQGILSEHVSVYVHAELRAV
HVATDGGRVCRPLILV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007645RNA_pol_Rpb2_3
IPR007646RNA_pol_Rpb2_4
IPR015712DNA-dir_RNA_pol_su2