mRNA_M-pyrifera_M_contig101913.411.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101913.411.1
Unique NamemRNA_M-pyrifera_M_contig101913.411.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101913.411.1 vs. uniprot
Match: A0A6A5NPJ1_LUPAL (Putative thioredoxin-like, endoplasmic reticulum vesicle transporter n=2 Tax=Lupinus TaxID=3869 RepID=A0A6A5NPJ1_LUPAL)

HSP 1 Score: 54.7 bits (130), Expect = 7.810e-7
Identity = 27/84 (32.14%), Postives = 43/84 (51.19%), Query Frame = 1 
Query:    1 GVVTPEYEHSALTEEERAHGAFEATGGSLREYLDSHTLVAVAFTASWCSHCQVLKPTWDKVASDLRA-----YDEHVRLARVEC 237
            G V    +H    +EE   G+   T  +  +Y+    +  V F A WCS CQ LKP+W+KVA+ ++       D  + +A+V+C
Sbjct:  123 GTVANAVKHDDEVDEESVEGSLSLTEHNFNKYIHQFPITVVNFYAPWCSWCQRLKPSWEKVANIIKERYDPEIDGRILVAKVDC 206
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BLAST of mRNA_M-pyrifera_M_contig101913.411.1 vs. uniprot
Match: G8Y527_PICSO (Piso0_005426 protein n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y527_PICSO)

HSP 1 Score: 51.2 bits (121), Expect = 1.280e-5
Identity = 20/37 (54.05%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  121 VAFTASWCSHCQVLKPTWDKVASDLRAYDEHVRLARV 231
            VAFTASWC HC+ LKP W+K+A+ +   DE +++A+V
Sbjct:  168 VAFTASWCPHCERLKPVWEKLANVIFDRDEQIKIAQV 204
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BLAST of mRNA_M-pyrifera_M_contig101913.411.1 vs. uniprot
Match: A0A8K0KG75_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KG75_LADFU)

HSP 1 Score: 48.9 bits (115), Expect = 8.440e-5
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  121 VAFTASWCSHCQVLKPTWDKVASDLRAYDEHVRLARVEC 237
            V F A WC+HCQ L PTW+K+A  L +Y+E V +++++C
Sbjct:  198 VKFYAPWCTHCQRLAPTWEKLAESL-SYEEGVSISKIDC 235
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101913.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6A5NPJ1_LUPAL7.810e-732.14Putative thioredoxin-like, endoplasmic reticulum v... [more]
G8Y527_PICSO1.280e-554.05Piso0_005426 protein n=2 Tax=Pichia sorbitophila (... [more]
A0A8K0KG75_LADFU8.440e-548.72Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101913contigM-pyrifera_M_contig101913:430..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-16_002760.1
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.4495895-CDS-M-pyrifera_M_contig101913:429..6661622815519.4495895-CDS-M-pyrifera_M_contig101913:429..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101913 430..666 +
1692277447.1614087-CDS-M-pyrifera_M_contig101913:429..6661692277447.1614087-CDS-M-pyrifera_M_contig101913:429..666Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101913 430..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101913.411.1prot_M-pyrifera_M_contig101913.411.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101913 430..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101913.411.1

>prot_M-pyrifera_M_contig101913.411.1 ID=prot_M-pyrifera_M_contig101913.411.1|Name=mRNA_M-pyrifera_M_contig101913.411.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
GVVTPEYEHSALTEEERAHGAFEATGGSLREYLDSHTLVAVAFTASWCSH
CQVLKPTWDKVASDLRAYDEHVRLARVEC
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mRNA from alignment at M-pyrifera_M_contig101913:430..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101913.411.1 ID=mRNA_M-pyrifera_M_contig101913.411.1|Name=mRNA_M-pyrifera_M_contig101913.411.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig101913:430..666+ (Macrocystis pyrifera P11B4 male)
GGCGTTGTGACGCCTGAGTACGAGCACTCTGCGTTGACGGAGGAGGAGCG
TGCGCACGGCGCGTTCGAGGCGACAGGAGGTTCGTTGCGGGAGTACTTGG
ATTCTCACACTCTGGTGGCGGTTGCGTTCACGGCGTCGTGGTGCAGCCAT
TGCCAGGTGCTGAAGCCGACGTGGGATAAGGTGGCTTCGGATTTGCGGGC
TTACGATGAGCATGTGCGTTTGGCACGGGTGGAGTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101913:430..666+

>mRNA_M-pyrifera_M_contig101913.411.1 ID=mRNA_M-pyrifera_M_contig101913.411.1|Name=mRNA_M-pyrifera_M_contig101913.411.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig101913:430..666+ (Macrocystis pyrifera P11B4 male)
GGCGTTGTGACGCCTGAGTACGAGCACTCTGCGTTGACGGAGGAGGAGCG
TGCGCACGGCGCGTTCGAGGCGACAGGAGGTTCGTTGCGGGAGTACTTGG
ATTCTCACACTCTGGTGGCGGTTGCGTTCACGGCGTCGTGGTGCAGCCAT
TGCCAGGTGCTGAAGCCGACGTGGGATAAGGTGGCTTCGGATTTGCGGGC
TTACGATGAGCATGTGCGTTTGGCACGGGTGGAGTGTGGCGTTGTGACGC
CTGAGTACGAGCACTCTGCGTTGACGGAGGAGGAGCGTGCGCACGGCGCG
TTCGAGGCGACAGGAGGTTCGTTGCGGGAGTACTTGGATTCTCACACTCT
GGTGGCGGTTGCGTTCACGGCGTCGTGGTGCAGCCATTGCCAGGTGCTGA
AGCCGACGTGGGATAAGGTGGCTTCGGATTTGCGGGCTTACGATGAGCAT
GTGCGTTTGGCACGGGTGGAGTGT
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