mRNA_M-pyrifera_M_contig101907.407.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101907.407.1
Unique NamemRNA_M-pyrifera_M_contig101907.407.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A2E8N298_9RICK (Uncharacterized protein n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E8N298_9RICK)

HSP 1 Score: 113 bits (282), Expect = 1.760e-26
Identity = 60/149 (40.27%), Postives = 94/149 (63.09%), Query Frame = 1
Query:    1 VIAIGALTGVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSISFVFRNGPLLLLFFDI 447
            ++ IG +     LG Y FA T +N+PI L ENS+ PV+FQKA E+  T+      +++K+ +   I+S   +  LS  A + F  VFG +W +AG +  L+S +Y  +A++APY SFWRI+K+EK+L + + IS +FR  PL+ +FF +
Sbjct:  249 ILGIGLIYSETVLGLYVFAATILNIPITLIENSIRPVLFQKAVEVSQTNSGDLGYYYLKTLRIVPILSGGLIFILSGFANLIFPFVFGDKWASAGMIVPLMSIQYFASALIAPYDSFWRILKKEKELLRNNIISLLFRYSPLIFIFFHL 397          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A2D6AWZ7_9BACT (Uncharacterized protein n=1 Tax=Flammeovirgaceae bacterium TaxID=2026740 RepID=A0A2D6AWZ7_9BACT)

HSP 1 Score: 112 bits (280), Expect = 3.380e-26
Identity = 63/160 (39.38%), Postives = 99/160 (61.88%), Query Frame = 1
Query:    1 VIAIGALTGVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSISFVFRNGPLLLLFFDIRFFNFLYIYSI 480
            ++ IG +     LG Y FA T +N+PI L ENS+ PV+FQKA E+  T+      +++K+ +   I+S   +  LS  A + F  VFG +W +AG +  L+S +Y+ +A++APY SFWRI+K+EK+L + +  S +FR  PL+ +FF +    F+ I SI
Sbjct:  249 ILGIGLIYSETVLGLYVFAATILNIPITLIENSIRPVLFQKAVEVSQTNNGDLGYYYLKTLRIVPILSGGLIFILSGFANLIFPFVFGDKWASAGMIVPLMSIQYLASALIAPYDSFWRILKKEKELLRNNIFSLLFRYSPLVFIFFHLSEHLFVLIISI 408          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A6C1QFP6_9BACT (Uncharacterized protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A6C1QFP6_9BACT)

HSP 1 Score: 82.8 bits (203), Expect = 1.650e-15
Identity = 39/135 (28.89%), Postives = 75/135 (55.56%), Query Frame = 1
Query:   25 GVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSISFVFRNGPLL 429
            G   LG + FA + +++P++L  N++SPV +QKANEL NT   +      + +   + + ++P + +++   + F+++FGS+W  AG  A  +S  Y+   I  P  S + ++++E  LF+   +  + R   LL
Sbjct:  278 GSSVLGLFAFATSLLDMPMRLLGNAVSPVFYQKANELQNTKPSELPHVTYRLYNRLLFLGIIPFSFVTIFGDLIFNVIFGSQWTQAGLFAGYMSVYYLFRLISGPLTSIFNVLRKESLLFRFQLVLILTRFMALL 412          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A6I7R4Y0_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A6I7R4Y0_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 7.720e-15
Identity = 41/117 (35.04%), Postives = 69/117 (58.97%), Query Frame = 1
Query:   25 GVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREK 375
            G + +G+YTF+L  +++P++LF N++SPV  QKA E  NT+ ++  S    +F   ++  L+P   LS      F  VFG+ W+ AG +  LLS  Y+    ++P +S   I+++EK
Sbjct:  266 GFEMVGFYTFSLAMLDMPLRLFGNAISPVFTQKAAETQNTNPERVGSITKDAFLKLLLAGLIPFGLLSAFGDYIFVFVFGNNWQMAGTICRLLSVFYLFRLAVSPISSVLAIIRKEK 382          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A0L0QKI2_VIRPA (Polysaccharide biosynthesis protein n=2 Tax=Virgibacillus pantothenticus TaxID=1473 RepID=A0A0L0QKI2_VIRPA)

HSP 1 Score: 70.5 bits (171), Expect = 3.190e-11
Identity = 39/127 (30.71%), Postives = 64/127 (50.39%), Query Frame = 1
Query:   25 GVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSISF 405
            G Q LG+Y  A T +N+P  L  NS+  V + +A  +     ++ +   I  FK  ++I ++PL  + L  P  FS+VFGS W  AG  A +LS       I  P +  + + +++K+   L  + F
Sbjct:  253 GNQMLGFYGLANTLVNIPTLLVGNSVGDVFYGEAANIGKKEPERLKKLSIVLFKKLLLIGIIPLIVVILFGPYFFSIVFGSNWHEAGIYARILSFMVFTRLIFMPISRVFEVYEKQKEALYLDMLRF 379          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: UPI001C68B02F (oligosaccharide flippase family protein n=1 Tax=Bacillus sp. IITD106 TaxID=2864214 RepID=UPI001C68B02F)

HSP 1 Score: 68.9 bits (167), Expect = 1.100e-10
Identity = 43/152 (28.29%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   25 GVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSISFVFRNGPLLLLFFDIRFFNFLYIYSI 480
            G  +LG+Y+ +L  +N P+     S+S V++Q+ NE+Y   +K  + F +K+     IIS++P   L    P  F LV+  +W  +G ++ +++    +  +++P +  + ++ R K LF L  +S +F    +LL+     F  F+  YSI
Sbjct:  250 GATSLGFYSLSLRIVNAPLTFISVSVSQVLYQRLNEMYQKGEK-LRKFILKAAGILSIISIIPFCILFFWGPDLFGLVYSDKWRVSGEISRIMAFALCVRLVVSPLSPAFFVLNRVKLLFILQ-MSRLFTTSIILLIGSKFNFSTFIVFYSI 399          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: UPI001C08C586 (oligosaccharide flippase family protein n=1 Tax=Gilvimarinus agarilyticus TaxID=679259 RepID=UPI001C08C586)

HSP 1 Score: 67.4 bits (163), Expect = 3.730e-10
Identity = 38/125 (30.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query:   31 QNLGYYTFALTFINLPIQLF-ENSMSPVVFQKANELY-NTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREKQLFKLSSI 399
            + +GY  FA + +++PI++  +++++P++ +KA +L  + +  K  + F K++    IIS+   + L  ++P  FSL FGS WE AG +AS+LS  Y+   I  P +   +++  E+ L  + +I
Sbjct:  241 EEIGYMAFATSLLDMPIKIIGDSAITPILTRKALDLQKDKNHHKLITLFKKAYLSLTIISIPGFSVLIFLSPFIFSLAFGSTWERAGEMASILSIGYMFRLISTPNSIILKLLSMERMLLAVVAI 365          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: A0A1H6G6M9_9SPHN (Membrane protein involved in the export of O-antigen and teichoic acid n=1 Tax=Sphingopyxis sp. YR583 TaxID=1881047 RepID=A0A1H6G6M9_9SPHN)

HSP 1 Score: 64.7 bits (156), Expect = 3.290e-9
Identity = 38/112 (33.93%), Postives = 61/112 (54.46%), Query Frame = 1
Query:    4 IAIGALTGVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAP 339
            IAI AL G +  G++  A   I LP  L  N++  V  Q A E +   +++F+S F+++      + + PL  + LIAP AF+LVFG  W  +G+ A  L+    +  +L+P
Sbjct:  248 IAIAALYGPREAGFFMMAQRIIALPTSLIANAVGDVYRQNATEAWRR-QREFRSLFVRTMLSLAALVVAPLAVVVLIAPEAFALVFGETWRVSGFYAQSLAVAAALQFVLSP 358          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: Q2N6D7_ERYLH (O-antigen translocase n=1 Tax=Erythrobacter litoralis (strain HTCC2594) TaxID=314225 RepID=Q2N6D7_ERYLH)

HSP 1 Score: 64.3 bits (155), Expect = 4.490e-9
Identity = 38/112 (33.93%), Postives = 60/112 (53.57%), Query Frame = 1
Query:    4 IAIGALTGVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAP 339
            IAI AL G +  G++  A   I LP  L  N++  V  Q A E Y  +++ F++ F+K+      + +LP+ AL +IAP  F+ +FG EW  +G  A  L+    +  I +P
Sbjct:  249 IAIAALYGPREAGFFMMAQRIITLPTSLVANAVGDVYRQNATETYR-AQRSFRALFLKTLSALTALVILPIAALIIIAPDLFAFIFGDEWRVSGDYAQWLALAAGLQFIFSP 359          
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Match: UPI0018AFE83C (oligosaccharide flippase family protein n=1 Tax=Hymenobacter properus TaxID=2791026 RepID=UPI0018AFE83C)

HSP 1 Score: 63.9 bits (154), Expect = 6.250e-9
Identity = 29/113 (25.66%), Postives = 59/113 (52.21%), Query Frame = 1
Query:   37 LGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSKKKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASLLSTKYVITAILAPYASFWRIMKREK 375
            +G+Y+F+++ + LPI L  ++++PV +QKA+E  N + ++     +  +   + + L P   +++   + F  VFG +W  AG     L   YV        +  + I+KR++
Sbjct:  265 VGFYSFSISLLELPINLIGSAIAPVFYQKASETQNNNPERLSEITLSLYYKMLYLGLFPFGVITIFGDLLFGYVFGKQWITAGLFTGYLGYYYVFKLTSQSTSYIYTILKRQR 377          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101907.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A2E8N298_9RICK1.760e-2640.27Uncharacterized protein n=1 Tax=Rickettsiales bact... [more]
A0A2D6AWZ7_9BACT3.380e-2639.38Uncharacterized protein n=1 Tax=Flammeovirgaceae b... [more]
A0A6C1QFP6_9BACT1.650e-1528.89Uncharacterized protein n=1 Tax=Bacteroidetes bact... [more]
A0A6I7R4Y0_9BACT7.720e-1535.04Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A0L0QKI2_VIRPA3.190e-1130.71Polysaccharide biosynthesis protein n=2 Tax=Virgib... [more]
UPI001C68B02F1.100e-1028.29oligosaccharide flippase family protein n=1 Tax=Ba... [more]
UPI001C08C5863.730e-1030.40oligosaccharide flippase family protein n=1 Tax=Gi... [more]
A0A1H6G6M9_9SPHN3.290e-933.93Membrane protein involved in the export of O-antig... [more]
Q2N6D7_ERYLH4.490e-933.93O-antigen translocase n=1 Tax=Erythrobacter litora... [more]
UPI0018AFE83C6.250e-925.66oligosaccharide flippase family protein n=1 Tax=Hy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101907contigM-pyrifera_M_contig101907:186..665 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.9
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog1237149.C900_02868
Preferred namewzxA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Polysaccharide biosynthesis protein
EggNOG OGs47VIS@768503,4NR8U@976,COG2244@1,COG2244@2
COG Functional cat.S
Best tax levelCytophagia
Best eggNOG OGNA|NA|NA
Exons1
Model size480
Cds size480
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.308949-CDS-M-pyrifera_M_contig101907:185..6651622815519.308949-CDS-M-pyrifera_M_contig101907:185..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101907 186..665 -
1692277447.1144052-CDS-M-pyrifera_M_contig101907:185..6651692277447.1144052-CDS-M-pyrifera_M_contig101907:185..665Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101907 186..665 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101907.407.1prot_M-pyrifera_M_contig101907.407.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101907 186..665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101907.407.1

>prot_M-pyrifera_M_contig101907.407.1 ID=prot_M-pyrifera_M_contig101907.407.1|Name=mRNA_M-pyrifera_M_contig101907.407.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=160bp
VIAIGALTGVQNLGYYTFALTFINLPIQLFENSMSPVVFQKANELYNTSK
KKFQSFFIKSFKHTIIISLLPLTALSLIAPIAFSLVFGSEWENAGYVASL
LSTKYVITAILAPYASFWRIMKREKQLFKLSSISFVFRNGPLLLLFFDIR
FFNFLYIYSI
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mRNA from alignment at M-pyrifera_M_contig101907:186..665-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101907.407.1 ID=mRNA_M-pyrifera_M_contig101907.407.1|Name=mRNA_M-pyrifera_M_contig101907.407.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig101907:186..665- (Macrocystis pyrifera P11B4 male)
GTTATTGCTATTGGAGCTCTCACAGGTGTGCAAAATCTTGGATACTATAC CTTCGCCCTTACCTTTATTAATCTCCCGATTCAACTCTTTGAAAATTCTA TGTCTCCTGTTGTTTTTCAGAAGGCTAATGAGTTATACAATACCAGTAAA AAAAAGTTTCAGAGCTTTTTCATCAAATCTTTTAAACACACCATCATTAT TAGTTTACTACCATTGACAGCCCTGTCACTCATAGCTCCAATTGCATTTT CACTAGTCTTTGGTTCCGAATGGGAGAACGCTGGGTATGTGGCTAGCTTG CTTTCAACTAAATATGTAATTACAGCAATCCTCGCTCCTTATGCCAGCTT TTGGAGAATTATGAAGCGAGAAAAACAGCTTTTTAAGCTAAGCTCAATTT CTTTTGTATTTAGAAACGGCCCTTTATTATTACTCTTTTTTGATATTAGA TTTTTTAACTTCTTATATATTTACTCAATT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101907:186..665-

>mRNA_M-pyrifera_M_contig101907.407.1 ID=mRNA_M-pyrifera_M_contig101907.407.1|Name=mRNA_M-pyrifera_M_contig101907.407.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=960bp|location=Sequence derived from alignment at M-pyrifera_M_contig101907:186..665- (Macrocystis pyrifera P11B4 male)
GTTATTGCTATTGGAGCTCTCACAGGTGTGCAAAATCTTGGATACTATAC
CTTCGCCCTTACCTTTATTAATCTCCCGATTCAACTCTTTGAAAATTCTA
TGTCTCCTGTTGTTTTTCAGAAGGCTAATGAGTTATACAATACCAGTAAA
AAAAAGTTTCAGAGCTTTTTCATCAAATCTTTTAAACACACCATCATTAT
TAGTTTACTACCATTGACAGCCCTGTCACTCATAGCTCCAATTGCATTTT
CACTAGTCTTTGGTTCCGAATGGGAGAACGCTGGGTATGTGGCTAGCTTG
CTTTCAACTAAATATGTAATTACAGCAATCCTCGCTCCTTATGCCAGCTT
TTGGAGAATTATGAAGCGAGAAAAACAGCTTTTTAAGCTAAGCTCAATTT
CTTTTGTATTTAGAAACGGCCCTTTATTATTACTCTTTTTTGATATTAGA
TTTTTTAACTTCTTATATATTTACTCAATTGTTATTGCTATTGGAGCTCT
CACAGGTGTGCAAAATCTTGGATACTATACCTTCGCCCTTACCTTTATTA
ATCTCCCGATTCAACTCTTTGAAAATTCTATGTCTCCTGTTGTTTTTCAG
AAGGCTAATGAGTTATACAATACCAGTAAAAAAAAGTTTCAGAGCTTTTT
CATCAAATCTTTTAAACACACCATCATTATTAGTTTACTACCATTGACAG
CCCTGTCACTCATAGCTCCAATTGCATTTTCACTAGTCTTTGGTTCCGAA
TGGGAGAACGCTGGGTATGTGGCTAGCTTGCTTTCAACTAAATATGTAAT
TACAGCAATCCTCGCTCCTTATGCCAGCTTTTGGAGAATTATGAAGCGAG
AAAAACAGCTTTTTAAGCTAAGCTCAATTTCTTTTGTATTTAGAAACGGC
CCTTTATTATTACTCTTTTTTGATATTAGATTTTTTAACTTCTTATATAT
TTACTCAATT
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