mRNA_M-pyrifera_M_contig101906.406.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101906.406.1
Unique NamemRNA_M-pyrifera_M_contig101906.406.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101906.406.1 vs. uniprot
Match: A0A8J5RBF8_ZIZPA (Uncharacterized protein n=2 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5RBF8_ZIZPA)

HSP 1 Score: 48.5 bits (114), Expect = 7.000e-5
Identity = 28/63 (44.44%), Postives = 34/63 (53.97%), Query Frame = 1 
Query:   28 EDKSPYTPPVFSELDIGLQASFHRFLIDLGVGDEFADAVRAVADQKEHFEYLRWLKKVHAAIS 216
            EDK  Y  PVF  LD  LQ  F R+L   GV  + A +VR    QKEH +Y+ WLK +    S
Sbjct:  159 EDK--YEGPVFRYLDPRLQLIFDRYLQARGVNSKLASSVRHHLIQKEHVQYVSWLKSLEEMFS 219
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101906.406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8J5RBF8_ZIZPA7.000e-544.44Uncharacterized protein n=2 Tax=Zizania palustris ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101906contigM-pyrifera_M_contig101906:327..545 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815519.2705922-CDS-M-pyrifera_M_contig101906:326..5451622815519.2705922-CDS-M-pyrifera_M_contig101906:326..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101906 327..545 -
1692277447.1029265-CDS-M-pyrifera_M_contig101906:326..5451692277447.1029265-CDS-M-pyrifera_M_contig101906:326..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101906 327..545 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101906.406.1prot_M-pyrifera_M_contig101906.406.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101906 327..545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101906.406.1

>prot_M-pyrifera_M_contig101906.406.1 ID=prot_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
PRGTDPRSIEDKSPYTPPVFSELDIGLQASFHRFLIDLGVGDEFADAVRA
VADQKEHFEYLRWLKKVHAAIS*
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mRNA from alignment at M-pyrifera_M_contig101906:327..545-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101906.406.1 ID=mRNA_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig101906:327..545- (Macrocystis pyrifera P11B4 male)
CCACGTGGCACTGACCCGCGCTCCATCGAAGACAAGTCCCCGTACACCCC
ACCAGTCTTCTCAGAACTCGACATCGGCCTCCAGGCGTCCTTCCACAGGT
TCCTCATCGACCTCGGCGTAGGAGACGAATTCGCCGATGCAGTCAGGGCA
GTCGCGGACCAGAAGGAACACTTTGAATACCTGCGCTGGCTCAAGAAAGT
GCACGCCGCAATCTCCTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101906:327..545-

>mRNA_M-pyrifera_M_contig101906.406.1 ID=mRNA_M-pyrifera_M_contig101906.406.1|Name=mRNA_M-pyrifera_M_contig101906.406.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig101906:327..545- (Macrocystis pyrifera P11B4 male)
CCACGTGGCACTGACCCGCGCTCCATCGAAGACAAGTCCCCGTACACCCC
ACCAGTCTTCTCAGAACTCGACATCGGCCTCCAGGCGTCCTTCCACAGGT
TCCTCATCGACCTCGGCGTAGGAGACGAATTCGCCGATGCAGTCAGGGCA
GTCGCGGACCAGAAGGAACACTTTGAATACCTGCGCTGGCTCAAGAAAGT
GCACGCCGCAATCTCCTAACCACGTGGCACTGACCCGCGCTCCATCGAAG
ACAAGTCCCCGTACACCCCACCAGTCTTCTCAGAACTCGACATCGGCCTC
CAGGCGTCCTTCCACAGGTTCCTCATCGACCTCGGCGTAGGAGACGAATT
CGCCGATGCAGTCAGGGCAGTCGCGGACCAGAAGGAACACTTTGAATACC
TGCGCTGGCTCAAGAAAGTGCACGCCGCAATCTCCTAA
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