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Homology
BLAST of mRNA_M-pyrifera_M_contig10190.403.1 vs. uniprot
Match: D7G8V0_ECTSI (ABC1 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V0_ECTSI) HSP 1 Score: 248 bits (634), Expect = 8.880e-75 Identity = 130/174 (74.71%), Postives = 145/174 (83.33%), Query Frame = 1
Query: 1 VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRGLLPKSKEESTQKKLDAVWGVVQQVVESNAAKEQQGGGRGGISPGYPQLRSLFTFMSEVLSDPKTRQRLGPVLDQLGEFGREVSARIVERQATNVVRGGFGLLNVGQAFPALADVLDAVSPPSQR 522
V+LDLTISVLSFLLSDNALFLR+ LI+ELLDTMDE AASYNFAS+ATRGLLP+SKEESTQKKLDAVWGVVQQ+VE+ + GYPQLRSLF FMS++L DP+ RQ+LGPVLDQLGEF REV ARIVERQATNVVRGGF +LN QAFPALADVLD V+PP +
Sbjct: 644 VNLDLTISVLSFLLSDNALFLRDALIDELLDTMDEFGAASYNFASSATRGLLPRSKEESTQKKLDAVWGVVQQIVENXXXXXXXXXXXXXMGAGYPQLRSLFAFMSDLLGDPRRRQQLGPVLDQLGEFAREVFARIVERQATNVVRGGFEMLNPSQAFPALADVLDVVAPPRNQ 817
BLAST of mRNA_M-pyrifera_M_contig10190.403.1 vs. uniprot
Match: A0A835Z895_9STRA (ABC1 family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z895_9STRA) HSP 1 Score: 110 bits (274), Expect = 9.220e-25 Identity = 64/174 (36.78%), Postives = 100/174 (57.47%), Query Frame = 1
Query: 1 VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRGLLPKSKEESTQKKLDAVWGVVQQVVESNAAK---EQQGGGRGGISPG--YPQLRSLFTFMSEVLSDPKTRQRLGPVLDQLGEFGREVSARIVERQATNVVRGGFGLLNVGQAFPALADVLDAVS 507
V LDLT+++L F+LS+N FLREPLI+ELLDT+D + + +ASA +RGL+ + +++L +W +V QV +S K E++ G G +P LR++ + + L+DP+ PV +L RE++A++VERQA VV FP L + +DAV+
Sbjct: 543 VTLDLTLAILDFILSENGRFLREPLIDELLDTVDSIGGLAVEYASANSRGLISAPQSAPDRERLATLWNIVVQVAQSQRRKLAVEERANGLAIADEGLDFPTLRAMALRVCDALTDPERTALYLPVAQRLAGLAREIAAQVVERQAVRVVNAAIS--RTAGVFPVLINAVDAVN 714
BLAST of mRNA_M-pyrifera_M_contig10190.403.1 vs. uniprot
Match: A0A7S2XX88_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX88_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 8.740e-18 Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 1
Query: 1 VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRGLLPKSKEESTQKKLDAVWGVVQQVVESNAAKE------QQGGGRG---------GISPGYPQLRSLFTFMSEVLSDPKTRQRLGPVLDQLGEFGREVSARIVERQATNVVRGGFGLLNVGQAFPALADVLDAVSP 510
V+++L VL FL+S+N FLREPLINEL+DT D + A N AS A+ GLLP+S + +L+ + ++ Q +E + GGG G G G P L + L +P +++L P++ Q EV AR++ER A V + G + F LA++LD V P
Sbjct: 612 VNIELAGEVLDFLVSENGGFLREPLINELVDTADSVGLAGLNMASIASGGLLPRSPYTPDRARLEVLGKLLVQALERQQVQSPLPQMAMSGGGPGLTMSPALGAGAGAGLPNLVGSAQSALQYLQNPDNQKQLEPIIRQGNGILVEVFARLLERNAARVAKEGLKVAVSPLTFNPLANLLDIVLP 796
BLAST of mRNA_M-pyrifera_M_contig10190.403.1 vs. uniprot
Match: A0A7R9YF06_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YF06_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.680e-11 Identity = 49/168 (29.17%), Postives = 90/168 (53.57%), Query Frame = 1
Query: 1 VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRGLLPKSKEESTQKKLDAVWGVVQQVVESNAAKEQQGGGRGGISPGYPQLRSLFTFMSEVLSDPKTRQRLGPVLDQLGEFGREVSARIVERQATNVVRGGFGLLNVGQAFPALADVLDAV 504
+ +D + ++ +LLSD FLR PL+ +++DT+D LS A+ N + A+ GLLP+ E+ +++L+++ V+ + +ES+AA G ++ L ++ +LS+ K R++ P+L EV +VER A +R L++ +A VLD +
Sbjct: 605 LSIDGIVRIVEWLLSDKGAFLRRPLVQDIVDTLDSLSLAAGNALNLASLGLLPRPGEQPDRERLESIGRVLARALESDAAYSLA------AQEGNSRIEILQRGVA-LLSNEKLREKFNPILVAALPLFNEVVVLLVERGAKRELRALVRRLDLPGVVGQVARVLDGI 765
BLAST of mRNA_M-pyrifera_M_contig10190.403.1 vs. uniprot
Match: A0A7S3UUE8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUE8_HETAK) HSP 1 Score: 57.8 bits (138), Expect = 1.340e-6 Identity = 31/76 (40.79%), Postives = 49/76 (64.47%), Query Frame = 1
Query: 1 VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRGLLPKSKEESTQKKLDAVWGVVQQVVE 228
V L+L V+++L S+N FLREPLINEL++T+D L A N S AT+G LP+S + +++ + ++ Q +E
Sbjct: 582 VSLELATKVVNYLGSENGAFLREPLINELVETVDSLGIAGVNALSVATQGALPRSPYAPDRARVEVLARLLSQALE 657
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 246.5 |
Seed ortholog evalue | 9.1e-63 |
Seed eggNOG ortholog | 2880.D7G8V0 |
KEGG ko | ko:K08869 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | regulation of tocopherol cyclase activity |
EggNOG OGs | COG0661@1,KOG1235@2759 |
Ec32 ortholog description | ABC1 family protein |
Ec32 ortholog | Ec-15_004340.3 |
COG Functional cat. | E |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01001 |
Exons | 5 |
Model size | 525 |
Cds size | 525 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815519.0932972-CDS-M-pyrifera_M_contig10190:293..398 | 1622815519.0932972-CDS-M-pyrifera_M_contig10190:293..398 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 294..398 + |
1692277447.029375-CDS-M-pyrifera_M_contig10190:293..398 | 1692277447.029375-CDS-M-pyrifera_M_contig10190:293..398 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 294..398 + |
1622815519.107641-CDS-M-pyrifera_M_contig10190:801..924 | 1622815519.107641-CDS-M-pyrifera_M_contig10190:801..924 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 802..924 + |
1692277447.0409656-CDS-M-pyrifera_M_contig10190:801..924 | 1692277447.0409656-CDS-M-pyrifera_M_contig10190:801..924 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 802..924 + |
1622815519.1187139-CDS-M-pyrifera_M_contig10190:2021..2114 | 1622815519.1187139-CDS-M-pyrifera_M_contig10190:2021..2114 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 2022..2114 + |
1692277447.0500395-CDS-M-pyrifera_M_contig10190:2021..2114 | 1692277447.0500395-CDS-M-pyrifera_M_contig10190:2021..2114 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 2022..2114 + |
1622815519.130969-CDS-M-pyrifera_M_contig10190:3204..3276 | 1622815519.130969-CDS-M-pyrifera_M_contig10190:3204..3276 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 3205..3276 + |
1692277447.0606563-CDS-M-pyrifera_M_contig10190:3204..3276 | 1692277447.0606563-CDS-M-pyrifera_M_contig10190:3204..3276 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 3205..3276 + |
1622815519.1415946-CDS-M-pyrifera_M_contig10190:4148..4280 | 1622815519.1415946-CDS-M-pyrifera_M_contig10190:4148..4280 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 4149..4280 + |
1692277447.067979-CDS-M-pyrifera_M_contig10190:4148..4280 | 1692277447.067979-CDS-M-pyrifera_M_contig10190:4148..4280 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig10190 4149..4280 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10190.403.1 >prot_M-pyrifera_M_contig10190.403.1 ID=prot_M-pyrifera_M_contig10190.403.1|Name=mRNA_M-pyrifera_M_contig10190.403.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=175bp
VDLDLTISVLSFLLSDNALFLREPLINELLDTMDELSAASYNFASAATRG LLPKSKEESTQKKLDAVWGVVQQVVESNAAKEQQGGGRGGISPGYPQLRS LFTFMSEVLSDPKTRQRLGPVLDQLGEFGREVSARIVERQATNVVRGGFG LLNVGQAFPALADVLDAVSPPSQR* back to topmRNA from alignment at M-pyrifera_M_contig10190:294..4280+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig10190.403.1 ID=mRNA_M-pyrifera_M_contig10190.403.1|Name=mRNA_M-pyrifera_M_contig10190.403.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3987bp|location=Sequence derived from alignment at M-pyrifera_M_contig10190:294..4280+ (Macrocystis pyrifera P11B4 male) GTGGACCTCGATCTGACGATCTCTGTGCTGAGCTTTTTGCTTTCGGACAA
CGCGCTCTTCTTGAGGGAGCCGCTCATCAACGAGCTCCTCGACACCATGG
ACGAGGTAAGTCCCGAGGTTTGATTCGTGATACCCAGAGACCTGTGTTGG
TCCCTCTGTGTCTGTCTCTGGCTGTCGAGCCTCTCTTTGTTTGGCTGCCC
CCTGTCCCCGCATCCCCCACCCGATGTCCCCTGTCTCCTGTTCCCTGTGC
CTGTCCCATGTCCCCTGCCCCCTTAGAGCCTGTCTCCTATCCCCTCTCCC
AAATCCCATACTCCCTGGCAGACGTCTCCTGTATCACATTTTGGTAGACG
TTGCCCCCTTATCCCCTATCCCCTAAGTACCCTCTGTCCCCGATCCCCTG
TCACTTGCCCCATAGTCCGCTACCTCTTAGCCACGTCCCCTTTCCCCTAA
TCCTAACCCAATATCCTCTCTCCCCTATCCCCTGTCCCCGGTTGCCGGGA
GGGAGCAGTTGAGCGCCGCCTCGTACAACTTCGCGTCGGCAGCGACGAGG
GGTCTCCTGCCTAAAAGCAAGGAAGAGTCTACCCAGAAGAAGCTCGACGC
TGTATGGGGCGTGGTTCAGCAGGTGGTCGAGGTACGCGGGCCGGCGGGTG
GATGGTGTTTAAGTAGCTAACTGACTCGACAGGTGAATGAAAATATATGA
CCAAAACCTGCTGCGCTTCCTTTTTCCCGTGTGTTGTTACTACTGCCCAT
TCTCGCGCGTCTTGTGGTGTCTTTTGGCGACGACAATTGGTAGCGATTGG
TATGAACAGTCTCCTATGCGCCGCCGCCTCAACCCTTTGTGGGTAGGGTT
TGGTAGAGATTCCGAGTTGAGGCATTTTTGGCGGGGGCAAAGGGACTGAG
AAGGCTGCCGATCCAACGTTTGGGTGGAGTGAAACTACCCGGGCATGTTT
TCCTTTTTTTTTTCGTGACTTGCCGCGGTCCCTCCTAGCGCGTCGCGTCG
TTTATTTTGGGTGTGCGGACGATTTTCGACTGACGTAACATAACGTAGAA
CAACTTGGTATATCGTAGCGTTCGGCAGAATCGTTAATCCTGCAACAGTT
ACCCGGTAGTACTTACGTTAACCTTCGTAGCATTATCAGCAGTGGATGCA
TACATGGCCGGTGACGGGTGCCGGGGGGATGGTGAAAGATGGAAGGAGGG
CGGGTCATCGGCTAGGGCGGCCATCCAAGATCGGATAAGCCGACAGGTGT
AGGGATCATCAGGAAGGTATACGGTATGTACGGTAAGGATAACCGACGAG
CGGTAGCGACATCCAGTGCATGGTACAACAACGGTTCCCGACGCACGGCA
ACGATAATCGAGGAACGGTAACGGTCTCCCACGCACGGTAAGGGGAAGGG
TAACCAAAACGGGTGTAGCCGACGCGCGGTGAAGCTAGCTAGGTCTTGGC
GCCAAGTTTCTTTGCGCCGAGACTGCGGACCCAGGGATACGCTATTGTGT
GGATTGCCATGTGCTGTATGGTACTACTCGTGTTGTTTTAGCATCAGCAG
GTGTATCACTCTGAACCGGAATATAGCGACAATTCTGATGTAAAAAATCA
TTCCAATGTTCCTTATATTATGGGTCAGAGTAGTATTACAGTAGTTGGCG
TGTTCGGGCGGCACTGATTACCCCCTCTCCCTGCTTGCCCGCCCCCCCCG
CCCGCGTGCCGTCCCTCGCCCACCTCAGAGTAATGCTGCGAAGGAGCAGC
AAGGAGGCGGCAGAGGCGGGATAAGCCCGGGGTACCCCCAGCTTCGAAGC
CTGTTCACTTTTATGTCTGAGGTGCGGACCCCTTTTTTTTCTCTACTATC
AGTAGACACTGGGTGCTTTTTCTCGCGAGCGATGGACTACAATATAGAAT
AGAGATTTTCCCACCTGCTTGGTTAGCTTGAGAGTAATTTTACATCGTCG
GCGGCTGCTGCTGTTTTGTTTCTTTTTGGTCAGACTGATTGTTTTTTACT
AATTGCATTCCGTTACCTGCGTTTTTTATTTTACCGAGCTGGTCCGATAT
TGTTTGGTACCCGGTAAGGATTGGTGTCTGCTGGCACCTGCAAATTTTTG
TTACGTGACGTCTTTTTCCCCGAGAGAGGGACGCTGTTTTGACCGGTCGA
TGCGAGCGTCCTCTCCGGCGACAGTGCACGACATTGTATCGTTTTCCGGC
TGCGGTGTTGTATACGTAAGACGTACGTAAGTCTAATTTCAAGTCGCTTG
TCCGCGAAACGGGGATAAAATCCTGGATAGGTTAGTACCCGTCGTGGATT
TCAATAATTTTTGTGGGTGGTGGCTACGCCGCGATTACGATAAAGAGCTT
ATGATGGTATAGTGCGTGCAATGGGGAAAGGCGGTGTCGCGGGGCTGAAG
AGCTGCGGCGGTGCTCTCTCGCTGGCGCAGATGCCACTGCCGGGTGCGCA
TGGACGCGCAATACTTCTGCGACCTGTTTTTTTAGTGTTTTGTTTTGTTT
GCTTGTTTGTTGTGCCGTGTGGGTTGGTTGGTAGGTAGGTGTTCTTCTCC
TGTGTAGGCCTGGAAACAAACATCCCACGCTGAGGAAGTAGCAAACGCCT
CAATTTTGTGCATGCACACTCTATAATCGAGCTGTGTTTTCCCTTCCCAG
TTCCTTTGTTTACTTGCCCCAATGCTTACTTCGAACCAAAAGGTGCTTTG
CGCCACGTCTGCATTTTTATGATAGGCCAGGGAATGAAAGAAACAAAATC
GAAGAATAAAAGCATGGAAACACGAAGAGCGAAAATGTAACGCTGAGGAC
TGAGAAGCCAAAAACTTTTGCAATACCATCATTCGTGAGCTAAACGAAAA
ACTAATATATTTTTGACACTAGATCGCCCCGATCACCATCGCTCTTGCTG
GACGGTTGTAGGTGTTGAGCGATCCGAAGACGAGGCAGCGGCTCGGACCC
GTCCTCGACCAGCTCGGGGAATTTGGCCGAGAGGTAAGCCAGCTGGGGGG
GGGAATACGTGCGCGTCATGCGATTCAGTCCCTCCCTTGTCAAAACTTGT
TTTCGTTTCGTTGGGCGAGGGACCATAGAAATGTTACAGTCGTCAATCAA
TCCACCATTTGATCAACAGATCAATCATTCGCTAACAACAGGGAAGCTCC
GGCAGCCAATCAAACAAGCATTCAATCAACCATCCTTTTTACTCGATTAT
GTCCGTTTCGTTGGGATATGAGTGTGGCATCAACAGGTTATGTACGTATT
TGGTTTGCTCTTGTCGCGTGAGAATCCTCGAAATAGTTCTGTTTCGAGCC
ATGATTTGGGTTTTATATAGCGGATGAAATACGAAACAACGCATGGTACA
CGGTGCGGTTCGAATTCGTGCTGTGTGTATGTACCGTATCGAGCAAGTAG
GTTACGTCACAGAGGAGGGTGACAGAGTGTGCCTGCTACGTTTTGTCGTT
GAGGACAGCGAGGAACCCCGTTTTACCTGCCGGTGCCACAGAGTAGAATA
GCCGATGTGAGTACAATGGTGTCTCACCAACGTGATTAAGTCGCGATAGG
CGTTGTACTGACCTTTCTCCGTGGTAACCGCTTTAGGCAGCTGCTGCTGA
TGATAGTGATGCTGGTGATGCTGGCGATGCTGATGGTATTCTATTGCTGT
AATCTCTCACGAGAATGGGAGGCTCGAACCGTTTTTTTATCGCGCACGAA
ATTCCTGTTAAACCCGCCCCAACTCGAACCATCTACGTAAACTTCACCGT
TGAAACACCTCATAACTTCCTCTCTGCTCTCCCTTCCCCTCTCTTATCCG
CCCGCTGGGGGTGCTCTTGTATGTTTGTGTGCGTTTTGTGTGATGTTTTG
GTCAGGTTTCTGCCCGAATCGTAGAGCGGCAGGCGACGAACGTCGTCCGT
GGCGGGTTCGGTTTGCTCAACGTTGGTCAGGCGTTTCCTGCCCTCGCCGA
CGTCTTGGACGCCGTATCTCCCCCGAGCCAAAGGTAA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig10190:294..4280+ >mRNA_M-pyrifera_M_contig10190.403.1 ID=mRNA_M-pyrifera_M_contig10190.403.1|Name=mRNA_M-pyrifera_M_contig10190.403.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1050bp|location=Sequence derived from alignment at M-pyrifera_M_contig10190:294..4280+ (Macrocystis pyrifera P11B4 male) GTGGACCTCGATCTGACGATCTCTGTGCTGAGCTTTTTGCTTTCGGACAA CGCGCTCTTCTTGAGGGAGCCGCTCATCAACGAGCTCCTCGACACCATGG ACGAGGTGGACCTCGATCTGACGATCTCTGTGCTGAGCTTTTTGCTTTCG GACAACGCGCTCTTCTTGAGGGAGCCGCTCATCAACGAGCTCCTCGACAC CATGGACGAGTTGAGCGCCGCCTCGTACAACTTCGCGTCGGCAGCGACGA GGGGTCTCCTGCCTAAAAGCAAGGAAGAGTCTACCCAGAAGAAGCTCGAC GCTGTATGGGGCGTGGTTCAGCAGGTGGTCGAGTTGAGCGCCGCCTCGTA CAACTTCGCGTCGGCAGCGACGAGGGGTCTCCTGCCTAAAAGCAAGGAAG AGTCTACCCAGAAGAAGCTCGACGCTGTATGGGGCGTGGTTCAGCAGGTG GTCGAGAGTAATGCTGCGAAGGAGCAGCAAGGAGGCGGCAGAGGCGGGAT AAGCCCGGGGTACCCCCAGCTTCGAAGCCTGTTCACTTTTATGTCTGAGA GTAATGCTGCGAAGGAGCAGCAAGGAGGCGGCAGAGGCGGGATAAGCCCG GGGTACCCCCAGCTTCGAAGCCTGTTCACTTTTATGTCTGAGGTGTTGAG CGATCCGAAGACGAGGCAGCGGCTCGGACCCGTCCTCGACCAGCTCGGGG AATTTGGCCGAGAGGTGTTGAGCGATCCGAAGACGAGGCAGCGGCTCGGA CCCGTCCTCGACCAGCTCGGGGAATTTGGCCGAGAGGTTTCTGCCCGAAT CGTAGAGCGGCAGGCGACGAACGTCGTCCGTGGCGGGTTCGGTTTGCTCA ACGTTGGTCAGGCGTTTCCTGCCCTCGCCGACGTCTTGGACGCCGTATCT CCCCCGAGCCAAAGGTAAGTTTCTGCCCGAATCGTAGAGCGGCAGGCGAC GAACGTCGTCCGTGGCGGGTTCGGTTTGCTCAACGTTGGTCAGGCGTTTC CTGCCCTCGCCGACGTCTTGGACGCCGTATCTCCCCCGAGCCAAAGGTAA back to top
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