mRNA_M-pyrifera_M_contig101876.397.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_M-pyrifera_M_contig101876.397.1
Unique Name	mRNA_M-pyrifera_M_contig101876.397.1
Type	mRNA
Organism	Macrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))

Homology

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S4IB38_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IB38_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 2.640e-15
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1

Query:   28 RYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            R PNCRLF+GNLASE+TSK ELR IF KYG+IIE+PV+RR FGF
Sbjct:    9 RPPNCRLFIGNLASERTSKSELRSIFSKYGDIIEEPVIRRCFGF 52

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S0VGK7_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGK7_9CRYP)

HSP 1 Score: 67.4 bits (163), Expect = 2.540e-13
Identity = 27/50 (54.00%), Postives = 41/50 (82.00%), Query Frame = 1

Query:   10 PSTLSERYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            P  +++  PNCR+F+GNLA+EKT+ +E+ +IF +YG + E+P+LRRSFGF
Sbjct:    3 PPGVAKHPPNCRVFIGNLATEKTTPQEVANIFQRYGRLAEEPLLRRSFGF 52

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S0UC54_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UC54_HEMAN)

HSP 1 Score: 63.9 bits (154), Expect = 7.150e-12
Identity = 25/42 (59.52%), Postives = 36/42 (85.71%), Query Frame = 1

Query:   34 PNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            PNCR+F+GNLA+EKT+ +E+ +IF ++G + E P+LRRSFGF
Sbjct:   28 PNCRVFIGNLATEKTTSQEVAEIFQRFGRLAEPPLLRRSFGF 69

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S0N629_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N629_9CRYP)

HSP 1 Score: 62.0 bits (149), Expect = 3.990e-11
Identity = 24/42 (57.14%), Postives = 35/42 (83.33%), Query Frame = 1

Query:   34 PNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            PNCR+F+GNLASE+TS +E+  IF K+G + E+P +R++FGF
Sbjct:   10 PNCRVFIGNLASERTSPQEIAHIFEKHGRLAEEPTVRKTFGF 51

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A2V3IZT0_9FLOR (Heterogeneous nuclear ribonucleoprotein C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZT0_9FLOR)

HSP 1 Score: 65.5 bits (158), Expect = 4.280e-11
Identity = 30/50 (60.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:   10 PSTLSERYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            P  +  R  N R+F+GNLASE TS  E+ +IF KYG +IE+PVLRRSFGF
Sbjct:  368 PKYVKSRPKNARVFIGNLASEYTSPREIVEIFHKYGTLIEEPVLRRSFGF 417

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S3EF73_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EF73_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 5.840e-11
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1

Query:   34 PNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            PN R+F+GNLASE  +K+E+ D+F KYG ++E+PV+RRSFGF
Sbjct:  168 PNSRVFIGNLASENLTKQEVVDVFEKYGRLVEEPVMRRSFGF 209

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S0FZY4_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY4_9RHOD)

HSP 1 Score: 65.1 bits (157), Expect = 5.850e-11
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 1

Query:   34 PNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            PN R+F+GNLASE  +K+E+ D+F KYG ++E+PV+RRSFGF
Sbjct:  371 PNSRVFIGNLASENLTKQEVVDVFEKYGRLVEEPVMRRSFGF 412

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: A0A7S0EIZ2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EIZ2_9CRYP)

HSP 1 Score: 62.0 bits (149), Expect = 8.280e-11
Identity = 27/42 (64.29%), Postives = 33/42 (78.57%), Query Frame = 1

Query:   34 PNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            P CR+F+GNLA+EKTS  E+  IF K+G + E PVLRRSFGF
Sbjct:   24 PFCRVFIGNLAAEKTSVHEIERIFSKHGRLAEPPVLRRSFGF 65

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: R7QA32_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QA32_CHOCR)

HSP 1 Score: 63.9 bits (154), Expect = 1.500e-10
Identity = 29/50 (58.00%), Postives = 37/50 (74.00%), Query Frame = 1

Query:   10 PSTLSERYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            P T+  R  N R+F+GNLASE T   ++  IF KYG++IE+PVLRRSFGF
Sbjct:  410 PKTVKHRPENARVFIGNLASEYTDVAQIIKIFHKYGDLIEEPVLRRSFGF 459

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BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Match: M2Y4L5_GALSU (RNA-binding protein (Nab3), putative n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y4L5_GALSU)

HSP 1 Score: 63.2 bits (152), Expect = 2.790e-10
Identity = 28/44 (63.64%), Postives = 36/44 (81.82%), Query Frame = 1

Query:   28 RYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRSFGF 159
            R  + R+F+GNLASE+T+  EL  IF KYGN+IE+PV+RRSFGF
Sbjct:  243 RPADSRVFIGNLASERTTVAELVSIFSKYGNLIEEPVIRRSFGF 286

The following BLAST results are available for this feature:

BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot

BLAST of mRNA_M-pyrifera_M_contig101876.397.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S4IB38_9EUKA	2.640e-15	77.27	Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ...	[more]
A0A7S0VGK7_9CRYP	2.540e-13	54.00	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]
A0A7S0UC54_HEMAN	7.150e-12	59.52	Hypothetical protein (Fragment) n=1 Tax=Hemiselmis...	[more]
A0A7S0N629_9CRYP	3.990e-11	57.14	Hypothetical protein (Fragment) n=1 Tax=Cryptomona...	[more]
A0A2V3IZT0_9FLOR	4.280e-11	60.00	Heterogeneous nuclear ribonucleoprotein C n=1 Tax=...	[more]
A0A7S3EF73_9RHOD	5.840e-11	61.90	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S0FZY4_9RHOD	5.850e-11	61.90	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]
A0A7S0EIZ2_9CRYP	8.280e-11	64.29	Hypothetical protein (Fragment) n=1 Tax=Hanusia ph...	[more]
R7QA32_CHOCR	1.500e-10	58.00	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
M2Y4L5_GALSU	2.790e-10	63.64	RNA-binding protein (Nab3), putative n=1 Tax=Galdi...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
M-pyrifera_M_contig101876	contig	M-pyrifera_M_contig101876:506..664 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90	2022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	62.0
Seed ortholog evalue	9.6e-08
Seed eggNOG ortholog	130081.XP_005707309.1
KEGG ko	ko:K15561
Hectar predicted targeting category	no signal peptide or anchor
EggNOG free text desc.	RNA binding
EggNOG OGs	KOG0118@1,KOG0118@2759
COG Functional cat.	H
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03021
Exons	1
Model size	159
Cds size	159
Stop	0
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815518.7866826-CDS-M-pyrifera_M_contig101876:505..664	1622815518.7866826-CDS-M-pyrifera_M_contig101876:505..664	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig101876 506..664 +
1692277446.9216902-CDS-M-pyrifera_M_contig101876:505..664	1692277446.9216902-CDS-M-pyrifera_M_contig101876:505..664	Macrocystis pyrifera P11B4 male	CDS	M-pyrifera_M_contig101876 506..664 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_M-pyrifera_M_contig101876.397.1	prot_M-pyrifera_M_contig101876.397.1	Macrocystis pyrifera P11B4 male	polypeptide	M-pyrifera_M_contig101876 506..664 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at M-pyrifera_M_contig101876:506..664+
coding sequence from alignment at M-pyrifera_M_contig101876:506..664+

protein sequence of mRNA_M-pyrifera_M_contig101876.397.1

>prot_M-pyrifera_M_contig101876.397.1 ID=prot_M-pyrifera_M_contig101876.397.1|Name=mRNA_M-pyrifera_M_contig101876.397.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MSGPSTLSERYPNCRLFLGNLASEKTSKEELRDIFGKYGNIIEDPVLRRS
FGF

mRNA from alignment at M-pyrifera_M_contig101876:506..664+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_M-pyrifera_M_contig101876.397.1 ID=mRNA_M-pyrifera_M_contig101876.397.1|Name=mRNA_M-pyrifera_M_contig101876.397.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=159bp|location=Sequence derived from alignment at M-pyrifera_M_contig101876:506..664+ (Macrocystis pyrifera P11B4 male)
ATGAGCGGCCCGTCGACGCTGTCCGAAAGGTACCCAAACTGTCGCCTCTT
TTTGGGAAACCTTGCGTCGGAGAAGACGAGCAAGGAGGAGCTGCGAGACA
TTTTCGGGAAGTACGGCAATATTATTGAGGATCCCGTTCTGCGGCGCAGC
TTTGGCTTC

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101876:506..664+

>mRNA_M-pyrifera_M_contig101876.397.1 ID=mRNA_M-pyrifera_M_contig101876.397.1|Name=mRNA_M-pyrifera_M_contig101876.397.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig101876:506..664+ (Macrocystis pyrifera P11B4 male)
ATGAGCGGCCCGTCGACGCTGTCCGAAAGGTACCCAAACTGTCGCCTCTT
TTTGGGAAACCTTGCGTCGGAGAAGACGAGCAAGGAGGAGCTGCGAGACA
TTTTCGGGAAGTACGGCAATATTATTGAGGATCCCGTTCTGCGGCGCAGC
TTTGGCTTCATGAGCGGCCCGTCGACGCTGTCCGAAAGGTACCCAAACTG
TCGCCTCTTTTTGGGAAACCTTGCGTCGGAGAAGACGAGCAAGGAGGAGC
TGCGAGACATTTTCGGGAAGTACGGCAATATTATTGAGGATCCCGTTCTG
CGGCGCAGCTTTGGCTTC