mRNA_M-pyrifera_M_contig10185.392.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10185.392.1
Unique NamemRNA_M-pyrifera_M_contig10185.392.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig10185.392.1 vs. uniprot
Match: D8LH24_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH24_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.340e-20
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   22 DDVVVSRVELDCRAYHHRKHWQESVLPRLYEFARMVYRFRDDHMLRFRYLLA 177
            DDV+VSRVELDCR Y HRKHW + VLPRLYEFARMVYRFR D +LR+RYLLA
Sbjct:  566 DDVLVSRVELDCRTYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLA 617
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BLAST of mRNA_M-pyrifera_M_contig10185.392.1 vs. uniprot
Match: A0A6H5JME7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.350e-20
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 1 
Query:   22 DDVVVSRVELDCRAYHHRKHWQESVLPRLYEFARMVYRFRDDHMLRFRYLLA 177
            DDV+VSRVELDCR Y HRKHW + VLPRLYEFARMVYRFR D +LR+RYLLA
Sbjct:  603 DDVLVSRVELDCRTYRHRKHWGQVVLPRLYEFARMVYRFRGDDLLRWRYLLA 654
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10185.392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH24_ECTSI6.340e-2080.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JME7_9PHAE6.350e-2080.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10185contigM-pyrifera_M_contig10185:117..293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.7e-16
Seed eggNOG ortholog2880.D8LH24
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2E1QQ@1,2S90U@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815518.5122128-CDS-M-pyrifera_M_contig10185:116..2931622815518.5122128-CDS-M-pyrifera_M_contig10185:116..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10185 117..293 +
1692277446.8024335-CDS-M-pyrifera_M_contig10185:116..2931692277446.8024335-CDS-M-pyrifera_M_contig10185:116..293Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10185 117..293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10185.392.1prot_M-pyrifera_M_contig10185.392.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10185 117..293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10185.392.1

>prot_M-pyrifera_M_contig10185.392.1 ID=prot_M-pyrifera_M_contig10185.392.1|Name=mRNA_M-pyrifera_M_contig10185.392.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=59bp
MAQAPKEDDVVVSRVELDCRAYHHRKHWQESVLPRLYEFARMVYRFRDDH
MLRFRYLLA
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mRNA from alignment at M-pyrifera_M_contig10185:117..293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10185.392.1 ID=mRNA_M-pyrifera_M_contig10185.392.1|Name=mRNA_M-pyrifera_M_contig10185.392.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=177bp|location=Sequence derived from alignment at M-pyrifera_M_contig10185:117..293+ (Macrocystis pyrifera P11B4 male)
ATGGCACAGGCACCGAAGGAGGACGACGTCGTGGTGTCTCGCGTGGAGCT
GGACTGCCGCGCCTACCACCACAGAAAGCACTGGCAGGAGAGCGTCCTGC
CTCGCCTCTACGAGTTCGCTCGAATGGTCTACAGGTTTCGGGACGACCAC
ATGCTGAGGTTTCGGTACCTCTTGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10185:117..293+

>mRNA_M-pyrifera_M_contig10185.392.1 ID=mRNA_M-pyrifera_M_contig10185.392.1|Name=mRNA_M-pyrifera_M_contig10185.392.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=354bp|location=Sequence derived from alignment at M-pyrifera_M_contig10185:117..293+ (Macrocystis pyrifera P11B4 male)
ATGGCACAGGCACCGAAGGAGGACGACGTCGTGGTGTCTCGCGTGGAGCT
GGACTGCCGCGCCTACCACCACAGAAAGCACTGGCAGGAGAGCGTCCTGC
CTCGCCTCTACGAGTTCGCTCGAATGGTCTACAGGTTTCGGGACGACCAC
ATGCTGAGGTTTCGGTACCTCTTGGCCATGGCACAGGCACCGAAGGAGGA
CGACGTCGTGGTGTCTCGCGTGGAGCTGGACTGCCGCGCCTACCACCACA
GAAAGCACTGGCAGGAGAGCGTCCTGCCTCGCCTCTACGAGTTCGCTCGA
ATGGTCTACAGGTTTCGGGACGACCACATGCTGAGGTTTCGGTACCTCTT
GGCC
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