mRNA_M-pyrifera_M_contig10179.378.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: D8LCS6_ECTSI (tRNA-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCS6_ECTSI) HSP 1 Score: 244 bits (623), Expect = 1.250e-75 Identity = 176/300 (58.67%), Postives = 196/300 (65.33%), Query Frame = 1 Query: 1 VDSWLDFATSFSSEGMDGVDRHLKGRSFLAGEAFSVADVAVYFACASTAAAASAASAKKYLDFFRWFNQMQHRVRTMAPSCEVIPAAVPLDIFTPVLVPLPPKRPSASVTATAT-----------------MGDATSKGVSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEEGTATAPAAGEKGXXXXXXXXXXXXXXXXXXXXPAARVEGHPSKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 VDSWLDF+TSFSSE + +++HL GRSFLAG AFS+ADVAVYFACA+ AAA A+ K+ L RWFNQ+QHRVR +APSC V+P V L+IF+PV VPLP K+P+ S A +G S S+P XXXXXXXXXXXXXXX +G A PAA KG XXXXXXXXX EG PSKLDVRVG IVKAWEHPDSEKLFCEEIDLGEG NR IASGLRA YTLEEMQGRRV VLANLK RN+GGFKS GMV Sbjct: 19 VDSWLDFSTSFSSEHLASLNKHLPGRSFLAGGAFSLADVAVYFACAAAVAAAPPAAGKQ-LHLCRWFNQVQHRVRLLAPSCPVLPPTVTLNIFSPVAVPLPAKQPATSSGAAQXXXXXXXXXXXXXXXXCGVGTEKSASASSPTEGKKXXXXXXXXXXXXXXXG-------------------DGKAATPAAAAKGAPGEAKKGAXXXXXXXXXA-----AEGDPSKLDVRVGTIVKAWEHPDSEKLFCEEIDLGEGANRNIASGLRAFYTLEEMQGRRVIVLANLKPRNIGGFKSNGMV 293
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A835ZED8_9STRA (tRNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZED8_9STRA) HSP 1 Score: 122 bits (305), Expect = 2.090e-28 Identity = 127/286 (44.41%), Postives = 154/286 (53.85%), Query Frame = 1 Query: 1 VDSWLDFATSFS-SEGMDGVDRHLKGRSFLAGEAFSVADVAVYFACASTAAAASAASAKKYLDFFRWFNQMQHRVRTMAPSCEV--IPAAVPLDIFTPVLVPLPPKRPSASVTATATMGDATSKGVSTPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGEEGTATAPAAGEKGXXXXXXXXXXXXXXXXXXXXPAARVEGHPSKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 +DSWLD S S +D HL RS+L G ++AD AVY A A K+ + RW Q + + C + A+ P + PV +P+P +P+A+ G AT G XXXXXXXXXXXXXXXXX G++G XXXXXXXXXXXX + E P+KLD+RVGVI K W+HPDSEKL+CEEID+GE K R IASGL+A Y LEEM+ RRV VLANLK R L GFKSEGMV Sbjct: 54 IDSWLDIVASGPISAHTASLDDHLSLRSYLVGPGLTLADAAVYIAIAQ------GQLDSKHTNVLRWALHCQCLISSACNECPPLQVTASPPRE---PVTLPVPKGKPAAAA------GGAT--GAKAAPADQKAKSDAANDAGXXXXXXXXXXXXXXXXXGEEDGKGKKGXXXXXXXXXXXXXXXXXXXXXXXAPATDGAATGSD-EADPTKLDIRVGVITKVWKHPDSEKLYCEEIDVGEDKPRQIASGLQAFYALEEMENRRVLVLANLKPRPLAGFKSEGMV 321
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7S0Y8C2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8C2_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.130e-25 Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 S LD+RVG IVKAW HP+SEKLFCEEIDLGE R IASGLRA Y EE++GRRV VL NLKAR L GF S GMV Sbjct: 43 SALDIRVGKIVKAWHHPESEKLFCEEIDLGEDAPRQIASGLRAFYKTEELEGRRVVVLCNLKARKLVGFPSHGMV 117
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7S2W340_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W340_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.290e-25 Identity = 55/76 (72.37%), Postives = 65/76 (85.53%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLE-EMQGRRVTVLANLKARNLGGFKSEGMV 849 +KLD+RVG I+KAW+H DSEKL+CEEID+GE K R+IASGLR Y E ++ GR+V VLANLKARNLGGFKSEGMV Sbjct: 25 TKLDMRVGKILKAWKHEDSEKLWCEEIDIGEDKPRLIASGLRQFYADEADLTGRKVLVLANLKARNLGGFKSEGMV 100
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7S2S818_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S818_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.320e-25 Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 +KLD+RVG IV+AWEHPDSEKLFCE ID G G+ R IASGLRA Y LE++Q R V V+ NLKAR LGGFKSEGMV Sbjct: 75 AKLDIRVGRIVEAWEHPDSEKLFCERIDFGGGEVRNIASGLRAFYKLEDLQDRLVVVMYNLKARPLGGFKSEGMV 149
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A8J9SYJ0_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9SYJ0_PHATR) HSP 1 Score: 105 bits (262), Expect = 2.780e-25 Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 SKLD+RVGVI KAW HP+++KLFCEEID+GE + R IASGLRA Y LE+++G+RV VL+NLK+R L F S GMV Sbjct: 6 SKLDIRVGVIQKAWVHPEADKLFCEEIDIGEDEPRQIASGLRAHYNLEDLEGQRVLVLSNLKSRKLVNFPSHGMV 80
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7S2G580_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G580_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.500e-24 Identity = 54/86 (62.79%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 598 PAARVEGHP--SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 PAA P +KL++ VG I K WEHPDSEKLFCE ID+GEG++R IASGLRA Y L +++ R V VLANLK + LGGFKS GMV Sbjct: 37 PAAEDPNAPPGAKLEIIVGKITKVWEHPDSEKLFCEHIDIGEGEDRQIASGLRAFYKLADLENRMVCVLANLKGKGLGGFKSTGMV 122
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7R9ZR76_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZR76_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.050e-24 Identity = 52/75 (69.33%), Postives = 59/75 (78.67%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 S LD+RVG IVKAWEHP+S+KLFCEE+DLGE R IASGLRA Y E+++ RRV VL NLK RNL GF S GMV Sbjct: 49 SALDIRVGKIVKAWEHPESDKLFCEEVDLGEDAPRQIASGLRAFYKKEDLENRRVVVLCNLKKRNLVGFPSHGMV 123
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7S4ST89_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4ST89_9STRA) HSP 1 Score: 107 bits (267), Expect = 2.700e-24 Identity = 52/79 (65.82%), Postives = 63/79 (79.75%), Query Frame = 1 Query: 613 EGHPSKLDVRVGVIVKAWEHPDSEKLFCEEIDLGEGKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 E H KLD+RVGVI KAW HP+++KL+CEEID+GE + R IASGLRA Y LE+++G+RV VLANLK R L GF S GMV Sbjct: 73 EIHVDKLDMRVGVITKAWLHPEADKLYCEEIDIGEEEPRQIASGLRAYYNLEDLEGQRVLVLANLKTRKLVGFPSHGMV 151
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Match: A0A7R9WA75_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WA75_9STRA) HSP 1 Score: 106 bits (265), Expect = 3.090e-24 Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 Query: 625 SKLDVRVGVIVKAWEHPDSEKLFCEEIDLGE-GKNRMIASGLRAAYTLEEMQGRRVTVLANLKARNLGGFKSEGMV 849 SKLD+RVGVI KAWEH +++KL+CEEID+GE G R IASGLRA Y L E++GRRV VLANLKAR L GFKS GMV Sbjct: 51 SKLDIRVGVINKAWEHEEADKLYCEEIDVGEEGGPRQIASGLRAHYDLGELEGRRVCVLANLKARKLVGFKSHGMV 126 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10179.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig10179.378.1 >prot_M-pyrifera_M_contig10179.378.1 ID=prot_M-pyrifera_M_contig10179.378.1|Name=mRNA_M-pyrifera_M_contig10179.378.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=283bp VDSWLDFATSFSSEGMDGVDRHLKGRSFLAGEAFSVADVAVYFACASTAAback to top mRNA from alignment at M-pyrifera_M_contig10179:7105..10634+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig10179.378.1 ID=mRNA_M-pyrifera_M_contig10179.378.1|Name=mRNA_M-pyrifera_M_contig10179.378.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=3530bp|location=Sequence derived from alignment at M-pyrifera_M_contig10179:7105..10634+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig10179:7105..10634+ >mRNA_M-pyrifera_M_contig10179.378.1 ID=mRNA_M-pyrifera_M_contig10179.378.1|Name=mRNA_M-pyrifera_M_contig10179.378.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1698bp|location=Sequence derived from alignment at M-pyrifera_M_contig10179:7105..10634+ (Macrocystis pyrifera P11B4 male)back to top |