mRNA_M-pyrifera_M_contig101782.374.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: UPI001939CB68 (mutS protein homolog 4-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939CB68) HSP 1 Score: 130 bits (326), Expect = 2.750e-31 Identity = 80/207 (38.65%), Postives = 115/207 (55.56%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASAR---NFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRV-LDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPL 609 V RHYFN+ GLD ++ ++E + L+A AAL+KYVE Q+ + AN L +V++G E +DA T +LELV N + + +LFG +N TRTA GAR+LR+ +L P N +E + +R V L D + LF+ L+A L R +DLD + + LV P+ T RTA + + I LKH L +P L L L Sbjct: 306 VQRHYFNEGKGLDYIKQLCVKERNSVEMDVNGKYYCLAATAALVKYVEFIQNTLFANFSLSIVFKGSEQTTLVDASTASALELVINLKNPKSEETLFGVLNHTRTAGGARMLRSNILQPPNDLETITSRHDCVQELTDEKDLFYGLKACLDRFDVDLDHLLSSLVQIPKQETERTAENKITSCILLKHILQLVPALEETLTNARSEL 512
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A667XC79_9TELE (DNA mismatch repair protein n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XC79_9TELE) HSP 1 Score: 127 bits (320), Expect = 1.670e-30 Identity = 81/209 (38.76%), Postives = 123/209 (58.85%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASA-----RNFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPLL 612 + R YFN++ GLD ++ L P ++ + L+AAAA++KY+E Q+ V A K L+V ++G E +D+ +V +LELV N R + +LFG +N T+TA GAR LR+ +L PL V+ + R T+ LL +E LFF L+ A+S LD+D + + LV P++ T + A + VI LKH L +PPLR +L+ LL Sbjct: 158 IQRKYFNESKGLDYIQQ--LCAPEFSTVLMEVQAKYYCLAAAAAVLKYLEFIQNSVYAPKSLKVSFKGSEQTAMIDSVSVTNLELVVNNRDHRSEHTLFGILNHTKTAGGARRLRSNILEPLLDVDTINIRLDTIHELLQDEELFFGLKNAISHFLDIDQLLSVLVQIPKLETVQVAEAKITHVIQLKHTLDLVPPLRMVLKNCSTALL 364
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A836CNW6_9STRA (Muts protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW6_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.320e-30 Identity = 77/198 (38.89%), Postives = 113/198 (57.07%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASARNFLTLSAAAALIKYVEHAQSIVLANKCLQV-VWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLE 591 V+R YF+ G +LLR + ++ L+A L++YVE+ A L+V + G +G + +D T + LEL+ NAR DQ+ SLFG INRT+T+VGARLLR+ +LSP + L+AR V+ L +E +F LSR DLD + + LV P+ TP+TA +G+ VI L+H + L P+ LE Sbjct: 137 VSRQYFDQDKGAELLRRISTKNLGADVFATYIVLAATNCLLRYVENITGHGHAPNSLRVSLCSGNQGRMVIDRSTALELELIVNARAFDQRRSLFGVINRTKTSVGARLLRSNILSPSTDLPTLEARLDLVAFFLSSERVFAGTLEHLSRFADLDRMLSGLVTVPKAVTPQTAAKGIETVICLRHTVQLLAPIVETLE 334
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A8K0ELV6_BRALA (MSH4 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ELV6_BRALA) HSP 1 Score: 127 bits (318), Expect = 3.220e-30 Identity = 78/206 (37.86%), Postives = 118/206 (57.28%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPAS---ARNFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPL 609 V R YFN+T GL +R + E A + +L+ AAL+KYVE Q++V A L++++ G E +DA T +LEL+ N R + +LFG +N T+TA GARL RA +L P +E + R V+ L DNE LF++LQ+ +SR LD+D + + V P+ T +TA + +I LKH L + PL+ L+ ++ L Sbjct: 385 VQRKYFNETKGLQYVRQLCVPEFNSIEMEVASKYYSLACTAALLKYVEFIQNVVYAPNSLKILFRGSEQCTMIDASTARNLELLQNVRDPKSQHTLFGAMNYTKTAAGARLTRANILQPPCDLETISMRLDCVAELTDNEELFYNLQSVVSRFLDVDHLLSMCVQIPKQETVKTAESKITNIIYLKHTLELVEPLQAALKDCDNQL 590
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A6P4XSV4_BRABE (mutS protein homolog 4-like n=2 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4XSV4_BRABE) HSP 1 Score: 125 bits (315), Expect = 7.880e-30 Identity = 78/200 (39.00%), Postives = 115/200 (57.50%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPAS---ARNFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLE 591 V R YFN+T GL +R + E A + +L+ AAL+KYVE Q++V A L++++ G E +DA T +LEL+ N R + +LFG +N T+TA GARL RA +L P VE + R V+ L DNE LF++LQ+ +SR LD+D + + V P+ + +TA + VI LKH L + PL+ L+ Sbjct: 208 VQRKYFNETKGLQYVRQLCVPEFNSIEMEVASKYYSLACTAALLKYVEFIQNVVYAPNSLKILFRGSEQCTMIDASTARNLELLQNTRDPKSQHTLFGAMNYTKTAAGARLTRANILQPPCDVETISMRLDCVAELTDNEELFYNLQSVVSRFLDVDHLLSVCVQIPKQESVKTAESKITNVIYLKHTLELVEPLQAALK 407
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: UPI00106BE4DC (mutS protein homolog 4-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106BE4DC) HSP 1 Score: 124 bits (312), Expect = 1.980e-29 Identity = 76/206 (36.89%), Postives = 117/206 (56.80%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPAS---ARNFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPL 609 V R YFN++ GL ++ + E + + L+ A+AL+KYVE Q++V A L++V++G E +DA T +LELV NAR L+G +N T+TA GAR+LR+ +L P + V + R V+ LL+ E F++LQ+ L+R LD+D + + P+ T +TA + VI LKH L + PLR L+ E+ L Sbjct: 190 VQRKYFNESQGLQYIKQLCVPEFNAVEMEVSSKYYCLATASALLKYVEFIQNLVYAPGSLRIVFKGSEQTTMIDASTARNLELVLNARNLGSDHCLYGVMNHTKTAAGARMLRSNILQPPSDVGTINTRLDCVTELLEKEEEFYTLQSVLARFLDVDHITTMCIQVPKTETVKTAESKITNVIYLKHTLELVDPLREALKNFENTL 395
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: UPI00051B139A (mutS protein homolog 4-like n=1 Tax=Fulmarus glacialis TaxID=30455 RepID=UPI00051B139A) HSP 1 Score: 122 bits (306), Expect = 7.020e-29 Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASAR---NFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPLL 612 V R YFN+T GL+ + E + L+AAAAL+KYVE Q+ V A K L+V ++G E +D+ + +LELV N R +LFG +N T+T G+R LR+ +L PL E + R V LL +E LFF LQA +S+ LD + + + LV P+ T +TA + +I LKH L + PL+ L + PLL Sbjct: 287 VQRKYFNETKGLEYIEQLCASEFSTIFMEVQSKYYCLAAAAALLKYVEFIQNSVYAPKSLKVCFQGSEKTAMIDSSSAQNLELVINNRDSRNGHTLFGVLNYTKTPGGSRRLRSNILEPLVDAETINTRLDCVQELLQDEELFFGLQAVISKFLDTEQLLSVLVQIPKQDTVKTAESKITNLIYLKHTLELVEPLKAALRSCNTPLL 493
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: K1PAT4_CRAGI (MutS-like protein 4 n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1PAT4_CRAGI) HSP 1 Score: 122 bits (306), Expect = 1.290e-28 Identity = 76/207 (36.71%), Postives = 113/207 (54.59%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLR---THGLREPPPASARNFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPLL 612 V R YFN+T GL ++ + L+AAAALIKYVE Q+++LA + V++ G E +DA T V+LEL+ N R + +L+G +N T+T GARLLRA +L P + + RQ VS L + E +F ++ ++R LD+D V + V P+ T +TA + +I LKH L + PLR L E+ L+ Sbjct: 354 VQRKYFNETKGLQFVKQLCVSDFNSVVMELTTKYYCLAAAAALIKYVEFTQNMILAPASINVIFSGCENTTMIDATTAVNLELLQNIRDPKSEHTLYGVLNYTKTIGGARLLRANILQPPCDLGTITMRQEVVSELTEKEDVFDNIHTVIARFLDIDHVLSMCVQIPKQETLKTAEANINNIIYLKHILELVDPLRNALSNCENRLM 560
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A7K5XBW2_9CHAR (MSH4 protein (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A7K5XBW2_9CHAR) HSP 1 Score: 120 bits (300), Expect = 1.480e-28 Identity = 78/207 (37.68%), Postives = 112/207 (54.11%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASAR---NFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPLL 612 V R YFN+T GL+ + E + L+AAAAL+KYVE Q+ V A K L+V ++G E +D+ + +LELV N R +LFG +N T+T G+R LR+ +L PL E + R V LL +E LFF LQA +S+ LD + + + LV P+ T + A + +I LKH L + PL+ L + PLL Sbjct: 153 VQRKYFNETKGLEYIEQLCASEFSTVFMEVQSKYYCLAAAAALLKYVEFIQNSVYAPKSLKVRFQGSEKTAMIDSSSAQNLELVINNRDSRNGHTLFGVLNYTKTPGGSRRLRSNILEPLVDAETINTRLDCVQELLQDEELFFGLQAVISKFLDTEQLLSVLVQIPKQDTVKAAESKITNLIYLKHTLELVEPLKAALRSCNTPLL 359
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Match: A0A0A0AD33_CHAVO (MutS protein 4 (Fragment) n=2 Tax=Charadrius vociferus TaxID=50402 RepID=A0A0A0AD33_CHAVO) HSP 1 Score: 122 bits (305), Expect = 1.700e-28 Identity = 79/207 (38.16%), Postives = 113/207 (54.59%), Query Frame = 1 Query: 1 VARHYFNDTVGLDLLRTHGLREPPPASAR---NFLTLSAAAALIKYVEHAQSIVLANKCLQVVWEGEEGHVSLDAETVVSLELVANARTGDQKASLFGCINRTRTAVGARLLRATLLSPLNRVEELQARQTTVSALLDNETLFFSLQAALSRVLDLDLVANHLVHRPRVCTPRTARQGVRAVIALKHCLAALPPLRTLLETEEDPLL 612 V R YFN+T GL+ + E + L+AAAAL+KYVE Q+ V A K L+V ++G E +D+ + +LELV N R +LFG +N T+T G+R LR+ +L PL E + R V LL +E LFF LQA +S+ LD + + + LV P+ T +TA + +I LKH L + PL+ L + PLL Sbjct: 153 VQRKYFNETKGLEYIEQLCASEFSTVFMEVQSKYYCLAAAAALLKYVEFIQNSVYAPKSLKVRFQGSEKTAMIDSSSAQNLELVINNRDSRNGHTLFGVLNYTKTPGGSRRLRSNILEPLVDAETINTRLDCVQELLQDEELFFGLQAVISKFLDTEQLLSVLVQIPKQDTVKTAESKITNLIYLKHTLELVEPLKAALRSCNTPLL 359 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101782.374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101782.374.1 >prot_M-pyrifera_M_contig101782.374.1 ID=prot_M-pyrifera_M_contig101782.374.1|Name=mRNA_M-pyrifera_M_contig101782.374.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=204bp VARHYFNDTVGLDLLRTHGLREPPPASARNFLTLSAAAALIKYVEHAQSIback to top mRNA from alignment at M-pyrifera_M_contig101782:21..632- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig101782.374.1 ID=mRNA_M-pyrifera_M_contig101782.374.1|Name=mRNA_M-pyrifera_M_contig101782.374.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=612bp|location=Sequence derived from alignment at M-pyrifera_M_contig101782:21..632- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101782:21..632- >mRNA_M-pyrifera_M_contig101782.374.1 ID=mRNA_M-pyrifera_M_contig101782.374.1|Name=mRNA_M-pyrifera_M_contig101782.374.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1224bp|location=Sequence derived from alignment at M-pyrifera_M_contig101782:21..632- (Macrocystis pyrifera P11B4 male)back to top |