mRNA_M-pyrifera_M_contig101769.371.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101769.371.1
Unique NamemRNA_M-pyrifera_M_contig101769.371.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101769.371.1 vs. uniprot
Match: A0A399Z591_9CHLR (Uncharacterized protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A399Z591_9CHLR)

HSP 1 Score: 51.6 bits (122), Expect = 2.650e-5
Identity = 42/107 (39.25%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 ASSGLGGAIGFEDDTTTEYSSLTVTNSRFLRNSAGSS----GGAIYSTGTILTVTDCFFAGNNGTDGGAVT--ASPYLNSAAAYIMDSNIFVGNYAASRGGAVWLAT 303
            A++  GGAI  E  + T    LTVTN+RF+ N+A       GGAIYS G ++T+   +F GN+ + GGA+   ASP++   AA I   +    +   S GGAV +A+
Sbjct:  117 ANNDKGGAIHVESSSAT----LTVTNARFMDNTASDPDNGYGGAIYSNG-VMTLEKIYFVGNSASRGGALASNASPFIAGHAAVIKTVDFKNNHVTTSNGGAVHVAS 218
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101769.371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A399Z591_9CHLR2.650e-539.25Uncharacterized protein n=2 Tax=Chloroflexi bacter... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101769contigM-pyrifera_M_contig101769:324..653 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.3340957-CDS-M-pyrifera_M_contig101769:323..6531622815517.3340957-CDS-M-pyrifera_M_contig101769:323..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101769 324..653 -
1692277446.292662-CDS-M-pyrifera_M_contig101769:323..6531692277446.292662-CDS-M-pyrifera_M_contig101769:323..653Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101769 324..653 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101769.371.1prot_M-pyrifera_M_contig101769.371.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101769 324..653 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101769.371.1

>prot_M-pyrifera_M_contig101769.371.1 ID=prot_M-pyrifera_M_contig101769.371.1|Name=mRNA_M-pyrifera_M_contig101769.371.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
ASSGLGGAIGFEDDTTTEYSSLTVTNSRFLRNSAGSSGGAIYSTGTILTV
TDCFFAGNNGTDGGAVTASPYLNSAAAYIMDSNIFVGNYAASRGGAVWLA
TNSQPNSLSN
back to top

mRNA from alignment at M-pyrifera_M_contig101769:324..653-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101769.371.1 ID=mRNA_M-pyrifera_M_contig101769.371.1|Name=mRNA_M-pyrifera_M_contig101769.371.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig101769:324..653- (Macrocystis pyrifera P11B4 male)
GCCTCTTCAGGCTTGGGTGGCGCCATTGGATTCGAAGACGACACTACCAC
TGAGTACAGCTCTCTGACAGTGACGAACTCTCGGTTCCTTCGCAATTCGG
CGGGGAGTTCTGGCGGCGCGATCTACTCAACCGGTACCATCCTCACGGTG
ACGGACTGCTTCTTCGCCGGTAACAACGGCACCGATGGAGGCGCGGTCAC
AGCAAGTCCCTACCTCAACAGTGCAGCGGCCTATATCATGGACTCGAACA
TCTTTGTCGGAAACTACGCAGCAAGCCGCGGAGGAGCTGTGTGGTTGGCG
ACCAACTCGCAGCCCAACTCGCTCTCCAAC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101769:324..653-

>mRNA_M-pyrifera_M_contig101769.371.1 ID=mRNA_M-pyrifera_M_contig101769.371.1|Name=mRNA_M-pyrifera_M_contig101769.371.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig101769:324..653- (Macrocystis pyrifera P11B4 male)
GCCTCTTCAGGCTTGGGTGGCGCCATTGGATTCGAAGACGACACTACCAC
TGAGTACAGCTCTCTGACAGTGACGAACTCTCGGTTCCTTCGCAATTCGG
CGGGGAGTTCTGGCGGCGCGATCTACTCAACCGGTACCATCCTCACGGTG
ACGGACTGCTTCTTCGCCGGTAACAACGGCACCGATGGAGGCGCGGTCAC
AGCAAGTCCCTACCTCAACAGTGCAGCGGCCTATATCATGGACTCGAACA
TCTTTGTCGGAAACTACGCAGCAAGCCGCGGAGGAGCTGTGTGGTTGGCG
ACCAACTCGCAGCCCAACTCGCTCTCCAACGCCTCTTCAGGCTTGGGTGG
CGCCATTGGATTCGAAGACGACACTACCACTGAGTACAGCTCTCTGACAG
TGACGAACTCTCGGTTCCTTCGCAATTCGGCGGGGAGTTCTGGCGGCGCG
ATCTACTCAACCGGTACCATCCTCACGGTGACGGACTGCTTCTTCGCCGG
TAACAACGGCACCGATGGAGGCGCGGTCACAGCAAGTCCCTACCTCAACA
GTGCAGCGGCCTATATCATGGACTCGAACATCTTTGTCGGAAACTACGCA
GCAAGCCGCGGAGGAGCTGTGTGGTTGGCGACCAACTCGCAGCCCAACTC
GCTCTCCAAC
back to top