mRNA_M-pyrifera_M_contig101768.370.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101768.370.1
Unique NamemRNA_M-pyrifera_M_contig101768.370.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A1S8VYS4_9FUNG (60S ribosomal protein L27 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VYS4_9FUNG)

HSP 1 Score: 132 bits (331), Expect = 6.700e-38
Identity = 63/82 (76.83%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 RSLKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            R LK G+VV+V QGRYAG+KAVIVKNFD+GT  RPY HA+VAGV++YPLK+T+SM++KKVAKRSKVKPFVKVVN+NH+MPTR
Sbjct:    3 RFLKTGKVVLVLQGRYAGKKAVIVKNFDEGTKERPYPHALVAGVERYPLKVTRSMNQKKVAKRSKVKPFVKVVNFNHMMPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A0L0H975_SPIPD (60S ribosomal protein L27 n=2 Tax=Spizellomycetales TaxID=34478 RepID=A0A0L0H975_SPIPD)

HSP 1 Score: 130 bits (328), Expect = 1.860e-37
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            LK G+VV+V QGRYAG+KAVIVKNFD+GT  RPY HA+VAG+++YPLK+TK M +K+VAKRS+VKPFVKVVNYNHLMPTR
Sbjct:    4 LKTGKVVLVLQGRYAGKKAVIVKNFDEGTKERPYPHAIVAGIERYPLKVTKGMGQKRVAKRSRVKPFVKVVNYNHLMPTR 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A1Y1YIZ3_9FUNG (60S ribosomal protein L27 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YIZ3_9FUNG)

HSP 1 Score: 130 bits (326), Expect = 3.860e-37
Identity = 57/80 (71.25%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            +K G+V I+ QGRYAG+K V++KNFD+GT  RPYGHA+VAGV++YPLK+ KSM KK+++KRSKVKPFVKVVNYNH+MPTR
Sbjct:    4 IKPGKVAIILQGRYAGKKVVVIKNFDEGTKERPYGHAIVAGVERYPLKVNKSMGKKRISKRSKVKPFVKVVNYNHIMPTR 83
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: T2MEU9_HYDVU (60S ribosomal protein L27 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2MEU9_HYDVU)

HSP 1 Score: 130 bits (326), Expect = 3.980e-37
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            +K G+VV+V  GRYAGRKA+IVKN+DDGT  RPYGHA+VAG+DKYPL++TK M KKKV KRSK+K F+KV+NYNHLMPTR
Sbjct:    5 MKAGKVVLVLGGRYAGRKAIIVKNYDDGTQDRPYGHALVAGIDKYPLRVTKPMGKKKVTKRSKIKSFIKVINYNHLMPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: L8GLJ9_ACACA (60S ribosomal protein L27 (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GLJ9_ACACA)

HSP 1 Score: 129 bits (325), Expect = 5.010e-37
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            LK G+VVIV  GRYAGRKAVIV+N DDGT ARPYG+AVVAGVDKYP KITKSM KKK+AK++K+ PFVK +NYNHLMPTR
Sbjct:    1 LKPGKVVIVLNGRYAGRKAVIVENRDDGTKARPYGYAVVAGVDKYPKKITKSMGKKKIAKKTKIAPFVKAINYNHLMPTR 80
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A1Y1WM81_9FUNG (60S ribosomal protein L27 n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WM81_9FUNG)

HSP 1 Score: 129 bits (325), Expect = 5.650e-37
Identity = 61/80 (76.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            LK G+VVI+ QGRYAG+KAVIVKN D+GT  RPYGHA+VAG+++YPLK+TKSM KKKVA RS VKPF+KVVNY HLMPTR
Sbjct:    5 LKNGKVVIILQGRYAGKKAVIVKNVDEGTKERPYGHAIVAGIERYPLKVTKSMDKKKVASRSHVKPFIKVVNYAHLMPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A1Y2CHK6_9FUNG (60S ribosomal protein L27 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CHK6_9FUNG)

HSP 1 Score: 128 bits (322), Expect = 1.200e-36
Identity = 58/80 (72.50%), Postives = 72/80 (90.00%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            LK G+VV+V  GRYAGRKAVIVKNFD+GT ++PY HAV+AG+++YPLKITK M +KK+AKRSKVKPF+K VNYNH++PTR
Sbjct:    5 LKSGKVVLVLSGRYAGRKAVIVKNFDEGTGSKPYPHAVIAGIERYPLKITKGMGQKKIAKRSKVKPFIKTVNYNHILPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: F4P906_BATDJ (60S ribosomal protein L27 n=2 Tax=Batrachochytrium dendrobatidis TaxID=109871 RepID=F4P906_BATDJ)

HSP 1 Score: 128 bits (321), Expect = 2.230e-36
Identity = 58/82 (70.73%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 RSLKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            R LK G+VV+V QGRYAG+KAVIVKNFD+GT  RPY HA++ GV++YPL+IT SMS+KKVA+RSK+KPF+KV+N+NH+MPTR
Sbjct:    3 RFLKPGKVVLVLQGRYAGKKAVIVKNFDEGTKERPYPHAIITGVERYPLRITSSMSQKKVARRSKIKPFIKVINFNHMMPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A388M8N0_CHABU (60S ribosomal protein L27 n=2 Tax=Chara TaxID=13778 RepID=A0A388M8N0_CHABU)

HSP 1 Score: 127 bits (320), Expect = 3.160e-36
Identity = 58/80 (72.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            LKQ +VV++  GRYAG KAVIVKNFDDGT  RPYGHA+VAG+ KYP K+TK +SKKK+AKR+++KPFVKV+NYNH+MPTR
Sbjct:    5 LKQNKVVVLLNGRYAGHKAVIVKNFDDGTSGRPYGHALVAGIAKYPRKVTKKLSKKKLAKRARLKPFVKVINYNHIMPTR 84
[Close]
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Match: A0A367KY20_RHIST (60S ribosomal protein L27 n=38 Tax=Opisthokonta TaxID=33154 RepID=A0A367KY20_RHIST)

HSP 1 Score: 127 bits (320), Expect = 3.260e-36
Identity = 59/80 (73.75%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    7 LKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLKITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR 246
            +K G+VV++ QGRYAG+KAV+V+N D+GT  RPYG+AVVAGV++ PLK+TKSM KKKVAKRSKVKPFVK+VNYNH+MPTR
Sbjct:    5 IKAGKVVVILQGRYAGKKAVVVRNHDEGTKDRPYGYAVVAGVERSPLKVTKSMGKKKVAKRSKVKPFVKIVNYNHMMPTR 84
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101768.370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S8VYS4_9FUNG6.700e-3876.8360S ribosomal protein L27 n=1 Tax=Batrachochytrium... [more]
A0A0L0H975_SPIPD1.860e-3776.2560S ribosomal protein L27 n=2 Tax=Spizellomycetale... [more]
A0A1Y1YIZ3_9FUNG3.860e-3771.2560S ribosomal protein L27 n=1 Tax=Basidiobolus mer... [more]
T2MEU9_HYDVU3.980e-3773.7560S ribosomal protein L27 n=1 Tax=Hydra vulgaris T... [more]
L8GLJ9_ACACA5.010e-3778.7560S ribosomal protein L27 (Fragment) n=1 Tax=Acant... [more]
A0A1Y1WM81_9FUNG5.650e-3776.2560S ribosomal protein L27 n=1 Tax=Linderina pennis... [more]
A0A1Y2CHK6_9FUNG1.200e-3672.5060S ribosomal protein L27 n=1 Tax=Rhizoclosmatium ... [more]
F4P906_BATDJ2.230e-3670.7360S ribosomal protein L27 n=2 Tax=Batrachochytrium... [more]
A0A388M8N0_CHABU3.160e-3672.5060S ribosomal protein L27 n=2 Tax=Chara TaxID=1377... [more]
A0A367KY20_RHIST3.260e-3673.7560S ribosomal protein L27 n=38 Tax=Opisthokonta Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101768contigM-pyrifera_M_contig101768:139..387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score130.6
Seed ortholog evalue3.5e-28
Seed eggNOG ortholog109760.SPPG_06748T0
Preferred nameRPL27B
KEGG koko:K02901
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0019538,GO:0022625,GO:0022626,GO:0030684,GO:0030687,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the eukaryotic ribosomal protein eL27 family
EggNOG OGs3A1HM@33154,3P2YN@4751,COG2163@1,KOG3418@2759
COG Functional cat.J
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size249
Cds size249
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815517.295131-CDS-M-pyrifera_M_contig101768:138..3871622815517.295131-CDS-M-pyrifera_M_contig101768:138..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101768 139..387 -
1692277446.28209-CDS-M-pyrifera_M_contig101768:138..3871692277446.28209-CDS-M-pyrifera_M_contig101768:138..387Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101768 139..387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101768.370.1prot_M-pyrifera_M_contig101768.370.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101768 139..387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101768.370.1

>prot_M-pyrifera_M_contig101768.370.1 ID=prot_M-pyrifera_M_contig101768.370.1|Name=mRNA_M-pyrifera_M_contig101768.370.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
RSLKQGRVVIVTQGRYAGRKAVIVKNFDDGTDARPYGHAVVAGVDKYPLK
ITKSMSKKKVAKRSKVKPFVKVVNYNHLMPTR*
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mRNA from alignment at M-pyrifera_M_contig101768:139..387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101768.370.1 ID=mRNA_M-pyrifera_M_contig101768.370.1|Name=mRNA_M-pyrifera_M_contig101768.370.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=249bp|location=Sequence derived from alignment at M-pyrifera_M_contig101768:139..387- (Macrocystis pyrifera P11B4 male)
CGCAGCTTGAAGCAGGGACGCGTGGTGATCGTCACCCAGGGCCGCTACGC
CGGTCGCAAGGCTGTTATCGTGAAGAACTTCGATGACGGCACAGATGCCC
GCCCCTACGGCCACGCCGTGGTTGCTGGTGTTGACAAGTACCCTCTGAAG
ATCACAAAGAGCATGAGCAAGAAGAAGGTTGCCAAGCGCTCTAAGGTGAA
GCCCTTCGTGAAGGTCGTCAACTACAACCACCTCATGCCCACTCGGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101768:139..387-

>mRNA_M-pyrifera_M_contig101768.370.1 ID=mRNA_M-pyrifera_M_contig101768.370.1|Name=mRNA_M-pyrifera_M_contig101768.370.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig101768:139..387- (Macrocystis pyrifera P11B4 male)
CGCAGCTTGAAGCAGGGACGCGTGGTGATCGTCACCCAGGGCCGCTACGC
CGGTCGCAAGGCTGTTATCGTGAAGAACTTCGATGACGGCACAGATGCCC
GCCCCTACGGCCACGCCGTGGTTGCTGGTGTTGACAAGTACCCTCTGAAG
ATCACAAAGAGCATGAGCAAGAAGAAGGTTGCCAAGCGCTCTAAGGTGAA
GCCCTTCGTGAAGGTCGTCAACTACAACCACCTCATGCCCACTCGGTAGC
GCAGCTTGAAGCAGGGACGCGTGGTGATCGTCACCCAGGGCCGCTACGCC
GGTCGCAAGGCTGTTATCGTGAAGAACTTCGATGACGGCACAGATGCCCG
CCCCTACGGCCACGCCGTGGTTGCTGGTGTTGACAAGTACCCTCTGAAGA
TCACAAAGAGCATGAGCAAGAAGAAGGTTGCCAAGCGCTCTAAGGTGAAG
CCCTTCGTGAAGGTCGTCAACTACAACCACCTCATGCCCACTCGGTAG
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