mRNA_M-pyrifera_M_contig100157.33.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig100157.33.1
Unique NamemRNA_M-pyrifera_M_contig100157.33.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: D7G2A4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A4_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 3.620e-34
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 1
Query:    1 PLLQDAKVSACFCTMGVGKPSK-----SSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRFGGATAGGGLYLGTKGKV 258
            PLL+DA V+ACF TMGVGKPSK     ++REEFEKVDL IPTAFA+AS+ AGCV+HISLL SVGA+A  KPSR  G  AGGGLYLG KGKV
Sbjct:   39 PLLRDAGVAACFVTMGVGKPSKVKSEQATREEFEKVDLEIPTAFAQASKSAGCVRHISLLGSVGADATAKPSRITGTAAGGGLYLGVKGKV 129          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A6H5K5V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V5_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.090e-29
Identity = 56/72 (77.78%), Postives = 62/72 (86.11%), Query Frame = 1
Query:   43 MGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRFGGATAGGGLYLGTKGKV 258
            MGVGKPSK++REEFEKVDL IPTAFA+AS+ AGCV+HISLL SVGA+A  KPSR  G  AGGGLYLG KGKV
Sbjct:    1 MGVGKPSKATREEFEKVDLEIPTAFAQASKSAGCVRHISLLGSVGADATAKPSRITGTAAGGGLYLGVKGKV 72          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A7S0EJ53_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EJ53_9EUKA)

HSP 1 Score: 77.0 bits (188), Expect = 3.980e-15
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 1
Query:    4 LLQDAKVSACFCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRF---GGATAGGGLYLGTKGKV 258
            L +    SA F  MGVG PSKS+ EE  ++D  +P AFA A++ AG V+H+S+LS+VGA+ + KP  F   G  +AGGGLY   KGK+
Sbjct:   78 LKEAGDASAAFNLMGVGTPSKSTEEELTRIDFAVPAAFASAAKAAG-VRHLSVLSAVGADKEAKPGGFLGFGKTSAGGGLYNMLKGKI 164          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: UPI000F8ECE50 (NAD(P)H-binding protein n=1 Tax=Pararhodobacter zhoushanensis TaxID=2479545 RepID=UPI000F8ECE50)

HSP 1 Score: 62.0 bits (149), Expect = 5.320e-10
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1
Query:   28 ACFCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGAN 183
            A  CT+GVG+PSK+SREEF +VD  IP AF +A RDAG V H  LL++VG++
Sbjct:   67 AALCTLGVGEPSKASREEFTRVDHDIPLAFGQACRDAG-VAHFGLLAAVGSD 117          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A1I3IR16_9RHOB (Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains n=1 Tax=Jannaschia pohangensis TaxID=390807 RepID=A0A1I3IR16_9RHOB)

HSP 1 Score: 59.7 bits (143), Expect = 8.300e-9
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   25 SACFCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRF 207
            S   C +GVG+PSK +R+EF ++D  IP  FA A+R AG V H  LLSSVGANA   PS F
Sbjct:   61 SVAICCLGVGEPSKVTRDEFRRIDHDIPLGFATAARAAG-VGHFLLLSSVGANA-ASPSFF 119          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A848VQ17_9BACT (NAD(P)H-binding protein n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A848VQ17_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 2.330e-8
Identity = 37/74 (50.00%), Postives = 47/74 (63.51%), Query Frame = 1
Query:   37 CTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRFGGATAGGGLYLGTKGKV 258
            CT+G+G+PSK SREEFE+VD      FAKA + AG V+H +LLSSVGA  D   S +         YL TKG++
Sbjct:   74 CTLGIGQPSKVSREEFERVDHDYVLDFAKACKAAG-VRHFALLSSVGA--DAGSSNY---------YLRTKGRL 135          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: UPI001F1EFF47 (NAD(P)H-binding protein n=1 Tax=Portibacter lacus TaxID=1099794 RepID=UPI001F1EFF47)

HSP 1 Score: 57.4 bits (137), Expect = 5.980e-8
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   34 FCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLK 195
            FCT+GVG+PSK SRE+F KVD      FAKA + AG V H  LL+SVG + + K
Sbjct:   70 FCTLGVGQPSKVSREDFRKVDYTAVLEFAKACKAAG-VDHFQLLASVGIDPNAK 122          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A1H9GEU9_9BACT (NAD(P)H-binding n=2 Tax=Lewinella agarilytica TaxID=478744 RepID=A0A1H9GEU9_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 8.720e-8
Identity = 31/53 (58.49%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   28 ACFCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANA 186
            A  CT+GVG+PSK SREEF K+D      FA+A R AG V H  LLSSVG +A
Sbjct:   77 AAICTLGVGQPSKMSREEFLKIDKQAVIDFARACRQAG-VAHFELLSSVGVDA 128          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: UPI000367E4FA (NAD(P)H-binding protein n=1 Tax=Lewinella persica TaxID=70998 RepID=UPI000367E4FA)

HSP 1 Score: 56.6 bits (135), Expect = 1.180e-7
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   34 FCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVG 177
             CT+GVG+PSK S+EEFEK+D +    FAKA + AG V+H  LLSSVG
Sbjct:   72 ICTLGVGEPSKISKEEFEKIDKLAVIDFAKACKVAG-VQHFELLSSVG 118          
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Match: A0A4R9LRT4_9LEPT (NAD(P)-bd_dom domain-containing protein n=2 Tax=Leptospira ilyithenensis TaxID=2484901 RepID=A0A4R9LRT4_9LEPT)

HSP 1 Score: 56.2 bits (134), Expect = 1.680e-7
Identity = 36/75 (48.00%), Postives = 43/75 (57.33%), Query Frame = 1
Query:   34 FCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVKHISLLSSVGANADLKPSRFGGATAGGGLYLGTKGKV 258
             CT+GVG+PSK SREEF ++D      FAK  +  G VKH  LL SVGA  D K S F         YL TKG++
Sbjct:   68 ICTLGVGEPSKMSREEFVRIDKDAVLDFAKTCKSKG-VKHFLLLGSVGA--DKKSSSF---------YLRTKGEI 130          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig100157.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2A4_ECTSI3.620e-3472.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5V5_9PHAE3.090e-2977.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0EJ53_9EUKA3.980e-1548.86Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
UPI000F8ECE505.320e-1059.62NAD(P)H-binding protein n=1 Tax=Pararhodobacter zh... [more]
A0A1I3IR16_9RHOB8.300e-955.74Uncharacterized conserved protein YbjT, contains N... [more]
A0A848VQ17_9BACT2.330e-850.00NAD(P)H-binding protein n=1 Tax=Rhodothermales bac... [more]
UPI001F1EFF475.980e-855.56NAD(P)H-binding protein n=1 Tax=Portibacter lacus ... [more]
A0A1H9GEU9_9BACT8.720e-858.49NAD(P)H-binding n=2 Tax=Lewinella agarilytica TaxI... [more]
UPI000367E4FA1.180e-760.42NAD(P)H-binding protein n=1 Tax=Lewinella persica ... [more]
A0A4R9LRT4_9LEPT1.680e-748.00NAD(P)-bd_dom domain-containing protein n=2 Tax=Le... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig100157contigM-pyrifera_M_contig100157:240..497 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D7G2A4
Hectar predicted targeting categoryother localisation
EggNOG OGs2D3WH@1,2ST0K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.4490592-CDS-M-pyrifera_M_contig100157:239..4971622815496.4490592-CDS-M-pyrifera_M_contig100157:239..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100157 240..497 -
1692277438.2606997-CDS-M-pyrifera_M_contig100157:239..4971692277438.2606997-CDS-M-pyrifera_M_contig100157:239..497Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig100157 240..497 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig100157.33.1prot_M-pyrifera_M_contig100157.33.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig100157 240..497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig100157.33.1

>prot_M-pyrifera_M_contig100157.33.1 ID=prot_M-pyrifera_M_contig100157.33.1|Name=mRNA_M-pyrifera_M_contig100157.33.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
PLLQDAKVSACFCTMGVGKPSKSSREEFEKVDLVIPTAFAKASRDAGCVK
HISLLSSVGANADLKPSRFGGATAGGGLYLGTKGKV
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mRNA from alignment at M-pyrifera_M_contig100157:240..497-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig100157.33.1 ID=mRNA_M-pyrifera_M_contig100157.33.1|Name=mRNA_M-pyrifera_M_contig100157.33.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig100157:240..497- (Macrocystis pyrifera P11B4 male)
CCCTTGCTGCAAGACGCCAAGGTAAGCGCGTGCTTCTGCACGATGGGCGT GGGAAAGCCTTCCAAGTCATCTCGCGAGGAGTTCGAGAAGGTGGACCTGG TCATCCCCACAGCGTTCGCGAAGGCGTCTAGGGATGCTGGGTGCGTGAAG CACATCTCGCTGCTTTCGTCTGTGGGAGCGAACGCGGACTTGAAGCCGTC TAGATTCGGTGGGGCTACGGCCGGGGGAGGGCTGTACTTGGGCACCAAGG GCAAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig100157:240..497-

>mRNA_M-pyrifera_M_contig100157.33.1 ID=mRNA_M-pyrifera_M_contig100157.33.1|Name=mRNA_M-pyrifera_M_contig100157.33.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig100157:240..497- (Macrocystis pyrifera P11B4 male)
CCCTTGCTGCAAGACGCCAAGGTAAGCGCGTGCTTCTGCACGATGGGCGT
GGGAAAGCCTTCCAAGTCATCTCGCGAGGAGTTCGAGAAGGTGGACCTGG
TCATCCCCACAGCGTTCGCGAAGGCGTCTAGGGATGCTGGGTGCGTGAAG
CACATCTCGCTGCTTTCGTCTGTGGGAGCGAACGCGGACTTGAAGCCGTC
TAGATTCGGTGGGGCTACGGCCGGGGGAGGGCTGTACTTGGGCACCAAGG
GCAAGGTGCCCTTGCTGCAAGACGCCAAGGTAAGCGCGTGCTTCTGCACG
ATGGGCGTGGGAAAGCCTTCCAAGTCATCTCGCGAGGAGTTCGAGAAGGT
GGACCTGGTCATCCCCACAGCGTTCGCGAAGGCGTCTAGGGATGCTGGGT
GCGTGAAGCACATCTCGCTGCTTTCGTCTGTGGGAGCGAACGCGGACTTG
AAGCCGTCTAGATTCGGTGGGGCTACGGCCGGGGGAGGGCTGTACTTGGG
CACCAAGGGCAAGGTG
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