mRNA_L-elsbetiae_contig17400.4882.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17400.4882.1
Unique NamemRNA_L-elsbetiae_contig17400.4882.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: D7G8P0_ECTSI (Superoxide dismutase [Fe] n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P0_ECTSI)

HSP 1 Score: 230 bits (587), Expect = 6.070e-74
Identity = 110/118 (93.22%), Postives = 113/118 (95.76%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            LAKAIDEAFGSMD+MKAQF TTAAGVFGSGWAWLGCT DGKLAITGTPNQDNPLM+GAA TAMVPILGLDVWEHAYYLKYQNRRPEYI AFWNVVNWAVVSENYEMYAS+GKGVPV G
Sbjct:  183 LAKAIDEAFGSMDEMKAQFGTTAAGVFGSGWAWLGCTPDGKLAITGTPNQDNPLMEGAAGTAMVPILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASQGKGVPVQG 300          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A835ZFH9_9STRA (Superoxide dismutase [Fe] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFH9_9STRA)

HSP 1 Score: 197 bits (500), Expect = 4.350e-61
Identity = 94/118 (79.66%), Postives = 99/118 (83.90%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            L  AID +FGS D MK +F   AAGVFGSGWAWLG TKDGKL IT TPNQDNPLM+GAACTAM+PILGLDVWEHAYYLKYQNRRPEYI AFWNVVNWA VSE YE YA K +GVPV G
Sbjct:  158 LTMAIDASFGSFDAMKEKFGAAAAGVFGSGWAWLGVTKDGKLDITTTPNQDNPLMEGAACTAMIPILGLDVWEHAYYLKYQNRRPEYIAAFWNVVNWAKVSEYYEQYALKQEGVPVQG 275          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A7S2XZ78_9STRA (Superoxide dismutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ78_9STRA)

HSP 1 Score: 181 bits (458), Expect = 4.070e-56
Identity = 86/118 (72.88%), Postives = 94/118 (79.66%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            LAKAIDEAFGSMD+MKA+F   A G FGSGW+WLG   DGKLA+ GTPNQDNPLM+GA  T M  ILG DVWEHAYYLKYQNRRPEY+  +WNVVNW  VSE Y+ YASKG  VPV G
Sbjct:   53 LAKAIDEAFGSMDEMKAKFNAAATGQFGSGWSWLGVQADGKLAVVGTPNQDNPLMEGATATPMNVILGCDVWEHAYYLKYQNRRPEYVENWWNVVNWGYVSEIYDKYASKGMPVPVEG 170          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A8J5XSB1_DIALT (Superoxide dismutase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XSB1_DIALT)

HSP 1 Score: 172 bits (437), Expect = 1.170e-51
Identity = 83/115 (72.17%), Postives = 91/115 (79.13%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVP 345
            LA  IDEAFGS D  K +F+  +AG FGSGW WLG   DGKLAI  TPNQDNPLMDG   T MVPILGLDVWEHAYYLKYQNRRPEYI +++NVVNW  V+ NYE YASKG+GVP
Sbjct:  152 LAAKIDEAFGSFDKFKEEFSAKSAGRFGSGWCWLGVKPDGKLAIDTTPNQDNPLMDGGCETKMVPILGLDVWEHAYYLKYQNRRPEYISSWFNVVNWEKVAFNYEKYASKGQGVP 266          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A7S0L727_9EUKA (Superoxide dismutase n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L727_9EUKA)

HSP 1 Score: 172 bits (435), Expect = 5.220e-51
Identity = 82/116 (70.69%), Postives = 92/116 (79.31%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPV 348
            LA  ID AFGS D+ KA+F+  AAGVFGSGWAWL   KDG + I  TPNQDNPLMDGA    +VPILG+DVWEHAYYLKYQNRRPEYI AF+NVVNWA V E Y+ YASKG+ VP+
Sbjct:  181 LATKIDAAFGSYDEFKAKFSAAAAGVFGSGWAWLAVAKDGSVQIVTTPNQDNPLMDGATEPGLVPILGIDVWEHAYYLKYQNRRPEYITAFYNVVNWAKVGEYYDEYASKGEPVPL 296          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: H8ZWH8_SACJA (Superoxide dismutase n=2 Tax=cellular organisms TaxID=131567 RepID=H8ZWH8_SACJA)

HSP 1 Score: 169 bits (428), Expect = 5.400e-51
Identity = 83/118 (70.34%), Postives = 89/118 (75.42%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            LA AI+ AFGS D  K +F+  A   FGSGWAWL     G+L +  TPNQDNPLM  A C    PILGLDVWEHAYYLKYQNRRPEYI AFWNVVNWAVVSENYEMYAS G+GVPV G
Sbjct:   96 LANAIESAFGSFDGFKDEFSGAAGSRFGSGWAWLCVHPGGELKVCSTPNQDNPLMPEAGCDGY-PILGLDVWEHAYYLKYQNRRPEYISAFWNVVNWAVVSENYEMYASAGRGVPVQG 212          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A7S3XQ28_HETAK (Superoxide dismutase [Fe] n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ28_HETAK)

HSP 1 Score: 171 bits (433), Expect = 5.410e-51
Identity = 85/119 (71.43%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACT-AMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            LA AIDEAFGSMD MK +F   A G FGSGWAWLG   DGKL I GTPNQDNPLM G     AM PILGLDVWEHAYYL+Y+NRR EY+  FW +VNWA VS+NYE YASKG GVPV G
Sbjct:  154 LATAIDEAFGSMDAMKEKFNAAATGQFGSGWAWLGVKADGKLGICGTPNQDNPLMKGIGKDLAMKPILGLDVWEHAYYLQYKNRRLEYVTNFWKIVNWAQVSDNYESYASKGMGVPVEG 272          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A7S0JAI9_9EUKA (Superoxide dismutase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JAI9_9EUKA)

HSP 1 Score: 167 bits (422), Expect = 7.130e-51
Identity = 78/115 (67.83%), Postives = 88/115 (76.52%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVP 345
            LA  ID AFGS D+ K  F+  AAGVFGSGWAWL   KDG + I  TPNQDNPLM+GA    +VPI+G+DVWEHAYYLKYQNRRPEYI AF+NVVNW  V E Y+ YASKG+ VP
Sbjct:   38 LAAKIDAAFGSYDEFKTAFSAAAAGVFGSGWAWLAVAKDGAVKIVTTPNQDNPLMEGATEAGLVPIMGIDVWEHAYYLKYQNRRPEYIAAFYNVVNWEKVGEYYDTYASKGEAVP 152          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: L1K0Q9_GUITC (Superoxide dismutase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K0Q9_GUITC)

HSP 1 Score: 169 bits (428), Expect = 3.630e-50
Identity = 81/117 (69.23%), Postives = 91/117 (77.78%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVV 351
            L KAID +FGSMD MK +F   AA  FGSGWAWLG T +GKLAIT TPNQDNPLM+G     M+P+LGLDVWEHAYYLKYQNRRPEYI  +W+VVNW  VS NYE +A+KG  V VV
Sbjct:  162 LQKAIDASFGSMDKMKEEFNAAAAKRFGSGWAWLGVTPEGKLAITSTPNQDNPLMEGCEGQKMIPVLGLDVWEHAYYLKYQNRRPEYITNWWSVVNWEAVSNNYEKFAAKGIPVEVV 278          
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Match: A0A7S1DDM0_HEMAN (Superoxide dismutase n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DDM0_HEMAN)

HSP 1 Score: 168 bits (426), Expect = 1.060e-49
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    1 LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQDNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVVSENYEMYASKGKGVPVVG 354
            L KAIDEAFGS D M   F+  AA  FGSGWAWLG + +GKL I  TPNQDNPLM+GA C  M+P+LGLDVWEHAYYLKYQN+RPEYI AF++V+NW VVS+NY  +A KG  VPV G
Sbjct:  175 LQKAIDEAFGSTDKMVEAFSGCAAKRFGSGWAWLGVSPEGKLVIDSTPNQDNPLMEGAGCAKMIPVLGLDVWEHAYYLKYQNKRPEYIKAFFSVINWGVVSKNYADFAVKGLPVPVQG 292          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17400.4882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8P0_ECTSI6.070e-7493.22Superoxide dismutase [Fe] n=1 Tax=Ectocarpus silic... [more]
A0A835ZFH9_9STRA4.350e-6179.66Superoxide dismutase [Fe] n=1 Tax=Tribonema minus ... [more]
A0A7S2XZ78_9STRA4.070e-5672.88Superoxide dismutase n=1 Tax=Fibrocapsa japonica T... [more]
A0A8J5XSB1_DIALT1.170e-5172.17Superoxide dismutase n=1 Tax=Diacronema lutheri Ta... [more]
A0A7S0L727_9EUKA5.220e-5170.69Superoxide dismutase n=1 Tax=Coccolithus braarudii... [more]
H8ZWH8_SACJA5.400e-5170.34Superoxide dismutase n=2 Tax=cellular organisms Ta... [more]
A0A7S3XQ28_HETAK5.410e-5171.43Superoxide dismutase [Fe] n=2 Tax=Heterosigma akas... [more]
A0A7S0JAI9_9EUKA7.130e-5167.83Superoxide dismutase n=1 Tax=Calcidiscus leptoporu... [more]
L1K0Q9_GUITC3.630e-5069.23Superoxide dismutase n=1 Tax=Guillardia theta (str... [more]
A0A7S1DDM0_HEMAN1.060e-4967.80Superoxide dismutase n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17400contigL-elsbetiae_contig17400:65..1546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue5.4e-59
Seed eggNOG ortholog2880.D7G8P0
KEGG koko:K04564
KEGG Pathwayko04013,ko04068,ko04146,ko04211,ko04212,ko04213,ko05016,map04013,map04068,map04146,map04211,map04212,map04213,map05016
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity, acting on superoxide radicals as acceptor
EggNOG OGsCOG0605@1,KOG0876@2759
EC1.15.1.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionmanganese superoxide dismutase
Ec32 orthologEc-22_002450.1
Exons3
Model size357
Cds size357
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17400.4882.1prot_L-elsbetiae_contig17400.4882.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17400 65..1546 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815725.0136938-CDS-L-elsbetiae_contig17400:64..2151622815725.0136938-CDS-L-elsbetiae_contig17400:64..215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 65..215 +
1691683061.79206-CDS-L-elsbetiae_contig17400:64..2151691683061.79206-CDS-L-elsbetiae_contig17400:64..215Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 65..215 +
1622815725.0273714-CDS-L-elsbetiae_contig17400:515..6611622815725.0273714-CDS-L-elsbetiae_contig17400:515..661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 516..661 +
1691683061.8031263-CDS-L-elsbetiae_contig17400:515..6611691683061.8031263-CDS-L-elsbetiae_contig17400:515..661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 516..661 +
1622815725.0385878-CDS-L-elsbetiae_contig17400:1486..15461622815725.0385878-CDS-L-elsbetiae_contig17400:1486..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 1487..1546 +
1691683061.812396-CDS-L-elsbetiae_contig17400:1486..15461691683061.812396-CDS-L-elsbetiae_contig17400:1486..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17400 1487..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17400.4882.1

>prot_L-elsbetiae_contig17400.4882.1 ID=prot_L-elsbetiae_contig17400.4882.1|Name=mRNA_L-elsbetiae_contig17400.4882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
LAKAIDEAFGSMDDMKAQFATTAAGVFGSGWAWLGCTKDGKLAITGTPNQ
DNPLMDGAACTAMVPILGLDVWEHAYYLKYQNRRPEYIGAFWNVVNWAVV
SENYEMYASKGKGVPVVG*
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mRNA from alignment at L-elsbetiae_contig17400:65..1546+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17400.4882.1 ID=mRNA_L-elsbetiae_contig17400.4882.1|Name=mRNA_L-elsbetiae_contig17400.4882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1482bp|location=Sequence derived from alignment at L-elsbetiae_contig17400:65..1546+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGCGAAGGCCATCGACGAGGCGTTCGGGTCGATGGACGACATGAAGGC CCAGTTCGCCACCACCGCGGCAGGCGTCTTCGGCTCGGGGTGGGCCTGGC TAGGCTGCACCAAGGACGGAAAGCTGGCAATCACGGGGACCCCCAACCAA GGTATTCCCATTCCCATAGTAACACAAGTGGGCCAAGAAAGAGATAGATG TATGTACGTACGTACGTACGGTATCTTGGGCATCACCGGGTGAGACTTCC AAAGACCTGAACTTGACTTGGAGGATCTTTCACCGAGCGAGACTTCCACA GACCTGGACTTGACTTGGGGGATCATTTGCGCACCCCCCCCCCCCCCCCC CCCTCCCCTGCACCCCCCTCCTCTCTCGTGATGTTTTTACTTCACTTCGC CGCGCCCGGTGCCCCCTTGCACCAACAACAACGACGCGCGTGATTTGGCA GACAACCCTCTAATGGACGGCGCGGCCTGCACGGCCATGGTGCCCATCCT TGGCCTCGACGTGTGGGAGCACGCCTACTACCTTAAGTACCAGAACCGCA GGCCTGAGTACATCGGCGCCTTCTGGAACGTCGTGAACTGGGCGGTGGTG AGTGCCGCATAATTTACAGCAGGATAATTATACTTCTATATACTTGAAAG TTTATTTTAATATATATATAATGGTAAGCTGTATACGCTGTTGTAGATCG AGCCAGCATATGTGTGACCCCAGTTGGGCCGTCTAGCCAGTCGTAGTGGA GTACGGGGGGGGGGGGAGCAGTGGGGCAGACGACAAATGTACCAATAATG GGAGGAAGAAGAAAACGAATGTACAGCAAATCGATGCGCGGTGGGTGCTG TTGTTTTGGCTCCAGCGCGTGTTATCCCACCGCTGCATATACTTGTTCGG CCTGGTTTGTTTGGTCGGTTTGGGGTTTTGGGGTCCAGCACCAAAAGGTC AAGCATAGGTTCGTGTGCGGGGGGGGTTCTTTGGGACGCGTGTGTTCTGA TCGAATGCCAAGAATCCCCCACCCTGCGCGCCCCCAAGACGGGAGATTTT TATTTTACACATGTCCCCGTAGCATGAAGACCCCGAGTAGCAGCTCCCTC CGGTGTTGTTGCCCGACTAAGCGGCAGCGGACGTGCTGTGCCCGTATCCC TAGGCTTGATAACAGTAGTACTGGTGATAACACCTGTTCCTGTAGGCGTT CTGCGTTCTGGTTCTGTCGCCCTCCTGGGGTTTCTTCTGGACAGAGAAGC GGTGTTTGGGACTTCTCTCTTCTCCCGACACGTGCGGCGCTTGCAAGCAC GATGTATTTCGCCAAACTCCGCACCCCTAGAATCGTGACACCCCCCCCCC CGTCCCCTTTCTTTTCCTCGTGCCCCTTCCTTCTCCGCGTGCGTCCGGCC GGTGCTGCGTTCGTTGTTTTAGGTCTCCGAGAACTACGAGATGTACGCAT CCAAGGGCAAGGGGGTACCGGTCGTGGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17400:65..1546+

>mRNA_L-elsbetiae_contig17400.4882.1 ID=mRNA_L-elsbetiae_contig17400.4882.1|Name=mRNA_L-elsbetiae_contig17400.4882.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig17400:65..1546+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGCGAAGGCCATCGACGAGGCGTTCGGGTCGATGGACGACATGAAGGC
CCAGTTCGCCACCACCGCGGCAGGCGTCTTCGGCTCGGGGTGGGCCTGGC
TAGGCTGCACCAAGGACGGAAAGCTGGCAATCACGGGGACCCCCAACCAA
GCTGGCGAAGGCCATCGACGAGGCGTTCGGGTCGATGGACGACATGAAGG
CCCAGTTCGCCACCACCGCGGCAGGCGTCTTCGGCTCGGGGTGGGCCTGG
CTAGGCTGCACCAAGGACGGAAAGCTGGCAATCACGGGGACCCCCAACCA
AGACAACCCTCTAATGGACGGCGCGGCCTGCACGGCCATGGTGCCCATCC
TTGGCCTCGACGTGTGGGAGCACGCCTACTACCTTAAGTACCAGAACCGC
AGGCCTGAGTACATCGGCGCCTTCTGGAACGTCGTGAACTGGGCGGTGAC
AACCCTCTAATGGACGGCGCGGCCTGCACGGCCATGGTGCCCATCCTTGG
CCTCGACGTGTGGGAGCACGCCTACTACCTTAAGTACCAGAACCGCAGGC
CTGAGTACATCGGCGCCTTCTGGAACGTCGTGAACTGGGCGGTGGTCTCC
GAGAACTACGAGATGTACGCATCCAAGGGCAAGGGGGTACCGGTCGTGGG
CTAAGTCTCCGAGAACTACGAGATGTACGCATCCAAGGGCAAGGGGGTAC
CGGTCGTGGGCTAA
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