mRNA_L-elsbetiae_contig1736.4858.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1736.4858.1
Unique NamemRNA_L-elsbetiae_contig1736.4858.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: D7FVH7_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH7_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.540e-15
Identity = 42/131 (32.06%), Postives = 72/131 (54.96%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            +H AV H   + +++L+DAGAN++    GGVTPL+A C+         +   + + +++++ GA   + D   ++ + YA+    +  +  IL   P  VN  + DG TPLY+A+  G+   V+ LLS GA
Sbjct:   37 IHVAVIHHDRKCLKVLIDAGANLDVTYSGGVTPLMAACKMRV------EEHGIEMVKEVIEAGANPLIQDNKRWACLWYAINLGRIRTIQTILSVAPTTVNQVAPDGSTPLYMASGFGQYEAVSLLLSAGA 161          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A6H5JAW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAW5_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 2.440e-11
Identity = 46/131 (35.11%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            +HAAV       +R LLDAGA+ NA D  G TPL+  C  F   D      R  + R+LL+ GA+ +     G  ++HYA   ++ +++ ++L      +N  +  G TPL  AA  G   +V  LLS GA
Sbjct:   86 VHAAVYARRVDSLRALLDAGADPNAADATGHTPLMQACRLFGAAD------RYVVVRELLRGGADPARQSDNGMIALHYASFRDDTDVIGLLLPKAMATLNQDTGYGGTPLCCAASGGYKESVRCLLSFGA 210          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A167MPK9_CORDF (Ankyrin repeat-containing domain protein n=1 Tax=Akanthomyces lecanii RCEF 1005 TaxID=1081108 RepID=A0A167MPK9_CORDF)

HSP 1 Score: 68.6 bits (166), Expect = 6.530e-11
Identity = 42/131 (32.06%), Postives = 63/131 (48.09%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            LH A  +    +V +LL AGA+ +A D  G TPL A C          D K +AI R LL  GA   +   +G  + H AV+ +N+ L++ +L    + V      G   ++ A+  G    V +L+S GA
Sbjct:  304 LHLAARYSSVAIVDILLSAGADADATDCSGTTPLFAACVR-------PDGKALAIVRFLLDHGASTHIASVSGEQAFHRAVKAQNIVLIEELLVRGTIEVGATDRKGRAGIHYASKEGNIDVVRYLISSGA 427          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A8C3UJ89_CATUS (Euchromatic histone lysine methyltransferase 2 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8C3UJ89_CATUS)

HSP 1 Score: 68.2 bits (165), Expect = 9.170e-11
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            LHAA    H ++  LLL AGAN+NAVD+   TPL+   E    D       ++  AR LL++G      DG+  + +H+A +  N+E+++++L    V VN +   G+TP+  AA       +  LL+RGA
Sbjct:  146 LHAAAQKGHLEICHLLLQAGANINAVDKQRRTPLM---EAVAND-------QLEAARYLLRRGGCVYSKDGS--TCLHHAAKNGNLEMVELLLSTGQVDVNAQDNGGWTPIIWAAEHKHIEVIRRLLTRGA 264          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A8C3MVW8_GEOPR (Uncharacterized protein n=1 Tax=Geospiza parvula TaxID=87175 RepID=A0A8C3MVW8_GEOPR)

HSP 1 Score: 68.2 bits (165), Expect = 9.770e-11
Identity = 49/135 (36.30%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQG--AEASVLDGT--GYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            LHAA    H ++  LLL AGAN+NAVD+   TPL+   E    D       ++  AR LLQ+G  A + V D    G + +H+A +  N+E+++++L    V VN +   G+TP+  AA       +  LL+RGA
Sbjct:  427 LHAAAQKGHLEICHLLLQAGANINAVDKQRRTPLM---EAVAND-------QLETARYLLQRGGCAYSQVRDTPEDGSTCLHHAAKNGNLEMVELLLSTGQVDVNAQDSGGWTPIIWAAEHKHIEVIRRLLTRGA 551          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: UPI0014433D03 (transient receptor potential channel pyrexia-like n=1 Tax=Megalopta genalis TaxID=115081 RepID=UPI0014433D03)

HSP 1 Score: 67.4 bits (163), Expect = 1.780e-10
Identity = 44/131 (33.59%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDD-SKRVAIARQLLQQGAEASVL-DGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSR 387
            LH AV H H+ VV++L++A A+VNA D  G TPL+          +P + SK V I + L+   A   V    TG + +H A +  N E   ++L G     +     G TPL+ AA +G  G + ++L +
Sbjct:  140 LHQAVQHNHSDVVKILVEANADVNAKDERGFTPLLLAGSNDEIRKNPKEMSKYVDIVKSLVAANASTDVFRKDTGTTVLHRAAELGNAEATQILLDGGASPYHQCIRYGNTPLHTAASVGSYGVLLNILKK 270          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: D8LMA9_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA9_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 8.340e-10
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 1
Query:   10 AVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            AVG+  A +V  LL  GAN NA D  G TP++  C T         S ++ + R LL+ GA+ +V +  G  ++H A    + +++ ++L   P  +N+ + +G TPL  AA  G   T++ L S GA
Sbjct:   73 AVGNAGALLV--LLQLGANPNATDSDGGTPIMVTCGTGSV-----TSTKLTMMRSLLKAGADLAVENELGGLAIHIAAGRCDAQVVALLLSMAPSTLNNATHNGLTPLAAAAEKGNESTMSLLFSEGA 193          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A8C8VQR5_9SAUR (Uncharacterized protein n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8VQR5_9SAUR)

HSP 1 Score: 63.2 bits (152), Expect = 5.350e-9
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            LHAA    H ++  +LL AGAN+NAVD+   TPL+              S +V  AR ++++G      DG+  + +H+A +  N+ ++ ++L    V VN +   G+TP+  AA       +  LL+RGA
Sbjct:  250 LHAAAQKGHLEICHVLLQAGANINAVDKMRRTPLMEAVV----------SNQVETARYIVRRGGCVYSKDGS--TCLHHAAKCGNLAMVSLLLATGQVDVNAQDNGGWTPIIWAAEHKHIEVIRLLLTRGA 368          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: UPI001EF8E83F (transient receptor potential channel pyrexia-like n=1 Tax=Diprion similis TaxID=362088 RepID=UPI001EF8E83F)

HSP 1 Score: 63.2 bits (152), Expect = 5.370e-9
Identity = 45/129 (34.88%), Postives = 63/129 (48.84%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLD-GTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLS 384
            LH AV   H  +V LLLDAGAN +A D+ GVTPL     T    D  D S+   I   L+   A  +++   TG +++H+AV   + +    +L G           G TPL++AA  G    +  LLS
Sbjct:  150 LHQAVKAGHVDIVNLLLDAGANPDARDQRGVTPLHLAAVTVDPSDQMDMSRFERIVDALVSASASVNIVHPDTGTTALHHAVTLGSCKATKRLLEGGAWPTARCIGTGITPLHIAASAGFHDILRILLS 278          
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Match: A0A8C8SUI2_9SAUR (Uncharacterized protein n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8SUI2_9SAUR)

HSP 1 Score: 63.2 bits (152), Expect = 5.440e-9
Identity = 42/131 (32.06%), Postives = 68/131 (51.91%), Query Frame = 1
Query:    1 LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDSKRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAVNHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA 393
            LHAA    H ++  +LL AGAN+NAVD+   TPL+              S +V  AR ++++G      DG+  + +H+A +  N+ ++ ++L    V VN +   G+TP+  AA       +  LL+RGA
Sbjct:  389 LHAAAQKGHLEICHVLLQAGANINAVDKMRRTPLMEAVV----------SNQVETARYIVRRGGCVYSKDGS--TCLHHAAKCGNLAMVSLLLATGQVDVNAQDNGGWTPIIWAAEHKHIEVIRLLLTRGA 507          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1736.4858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVH7_ECTSI2.540e-1532.06Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5JAW5_9PHAE2.440e-1135.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A167MPK9_CORDF6.530e-1132.06Ankyrin repeat-containing domain protein n=1 Tax=A... [more]
A0A8C3UJ89_CATUS9.170e-1135.11Euchromatic histone lysine methyltransferase 2 n=2... [more]
A0A8C3MVW8_GEOPR9.770e-1136.30Uncharacterized protein n=1 Tax=Geospiza parvula T... [more]
UPI0014433D031.780e-1033.59transient receptor potential channel pyrexia-like ... [more]
D8LMA9_ECTSI8.340e-1033.59Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A8C8VQR5_9SAUR5.350e-932.06Uncharacterized protein n=1 Tax=Pelusios castaneus... [more]
UPI001EF8E83F5.370e-934.88transient receptor potential channel pyrexia-like ... [more]
A0A8C8SUI2_9SAUR5.440e-932.06Uncharacterized protein n=1 Tax=Pelusios castaneus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1736contigL-elsbetiae_contig1736:22922..23314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.0
Seed ortholog evalue5.9e-14
Seed eggNOG ortholog2880.D8LSK8
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons1
Model size393
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815722.8268485-CDS-L-elsbetiae_contig1736:22921..233141622815722.8268485-CDS-L-elsbetiae_contig1736:22921..23314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1736 22922..23314 -
1691683060.3170455-CDS-L-elsbetiae_contig1736:22921..233141691683060.3170455-CDS-L-elsbetiae_contig1736:22921..23314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1736 22922..23314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1736.4858.1prot_L-elsbetiae_contig1736.4858.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1736 22922..23314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1736.4858.1

>prot_L-elsbetiae_contig1736.4858.1 ID=prot_L-elsbetiae_contig1736.4858.1|Name=mRNA_L-elsbetiae_contig1736.4858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=131bp
LHAAVGHLHAQVVRLLLDAGANVNAVDRGGVTPLIALCETFPGDDDPDDS
KRVAIARQLLQQGAEASVLDGTGYSSVHYAVQWENMELLDVILWGVPVAV
NHRSEDGFTPLYLAAMLGRAGTVTHLLSRGA
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mRNA from alignment at L-elsbetiae_contig1736:22922..23314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1736.4858.1 ID=mRNA_L-elsbetiae_contig1736.4858.1|Name=mRNA_L-elsbetiae_contig1736.4858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=393bp|location=Sequence derived from alignment at L-elsbetiae_contig1736:22922..23314- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGCCGCGGTCGGACACTTGCACGCGCAGGTGGTTCGCCTCCTCCT GGATGCGGGCGCAAACGTGAACGCTGTTGATCGTGGCGGAGTAACGCCTC TCATCGCGCTTTGCGAGACATTTCCGGGGGACGATGATCCCGACGATTCG AAACGCGTGGCCATCGCGCGGCAGCTTCTGCAGCAGGGGGCTGAAGCCAG TGTTCTGGACGGCACGGGATACTCCTCCGTCCACTACGCCGTGCAGTGGG AAAACATGGAGCTTCTCGACGTCATCTTGTGGGGGGTGCCGGTGGCCGTG AATCACCGTTCCGAAGACGGATTTACCCCGCTTTACCTTGCCGCGATGCT TGGTCGGGCTGGGACCGTGACCCACCTGCTCTCACGGGGAGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1736:22922..23314-

>mRNA_L-elsbetiae_contig1736.4858.1 ID=mRNA_L-elsbetiae_contig1736.4858.1|Name=mRNA_L-elsbetiae_contig1736.4858.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=786bp|location=Sequence derived from alignment at L-elsbetiae_contig1736:22922..23314- (Laminarionema elsbetiae ELsaHSoW15)
CTGCACGCCGCGGTCGGACACTTGCACGCGCAGGTGGTTCGCCTCCTCCT
GGATGCGGGCGCAAACGTGAACGCTGTTGATCGTGGCGGAGTAACGCCTC
TCATCGCGCTTTGCGAGACATTTCCGGGGGACGATGATCCCGACGATTCG
AAACGCGTGGCCATCGCGCGGCAGCTTCTGCAGCAGGGGGCTGAAGCCAG
TGTTCTGGACGGCACGGGATACTCCTCCGTCCACTACGCCGTGCAGTGGG
AAAACATGGAGCTTCTCGACGTCATCTTGTGGGGGGTGCCGGTGGCCGTG
AATCACCGTTCCGAAGACGGATTTACCCCGCTTTACCTTGCCGCGATGCT
TGGTCGGGCTGGGACCGTGACCCACCTGCTCTCACGGGGAGCGCTGCACG
CCGCGGTCGGACACTTGCACGCGCAGGTGGTTCGCCTCCTCCTGGATGCG
GGCGCAAACGTGAACGCTGTTGATCGTGGCGGAGTAACGCCTCTCATCGC
GCTTTGCGAGACATTTCCGGGGGACGATGATCCCGACGATTCGAAACGCG
TGGCCATCGCGCGGCAGCTTCTGCAGCAGGGGGCTGAAGCCAGTGTTCTG
GACGGCACGGGATACTCCTCCGTCCACTACGCCGTGCAGTGGGAAAACAT
GGAGCTTCTCGACGTCATCTTGTGGGGGGTGCCGGTGGCCGTGAATCACC
GTTCCGAAGACGGATTTACCCCGCTTTACCTTGCCGCGATGCTTGGTCGG
GCTGGGACCGTGACCCACCTGCTCTCACGGGGAGCG
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