mRNA_L-elsbetiae_contig1716.4771.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1716.4771.1
Unique NamemRNA_L-elsbetiae_contig1716.4771.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: D8LLY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLY8_ECTSI)

HSP 1 Score: 432 bits (1111), Expect = 4.460e-149
Identity = 222/235 (94.47%), Postives = 225/235 (95.74%), Query Frame = 1
Query:    1 MATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 705
            MATDSVELLALQRIDETCMQLQQQG+YLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGA +   GG  G  DQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEV  +
Sbjct:    1 MATDSVELLALQRIDETCMQLQQQGDYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGATVGDAGGEGG--DQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVTAR 233          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S3YLC4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YLC4_HETAK)

HSP 1 Score: 388 bits (997), Expect = 2.060e-130
Identity = 200/259 (77.22%), Postives = 221/259 (85.33%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARD 786
            D+ ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFG++SEEVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVTYNNLACYYRR+GKLHSALQYL KALKIE+KM   VE+PADTHLNTCAVLSQ+GRH  ALEHAQS++ILLQEELF G              D  PR DR+AVL IAYHN+GVEQEFLKK+E S+ SYRKGVEV +++LG  HA+TVTLRNS +AARRA+ ARD
Sbjct:   63 DNAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGAESEEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDQKGKAVTYNNLACYYRRQGKLHSALQYLQKALKIESKMKD-VENPADTHLNTCAVLSQLGRHTSALEHAQSSMILLQEELFQG--------------DGDPRPDRVAVLGIAYHNIGVEQEFLKKYEQSIASYRKGVEVVERFLGPRHAITVTLRNSLVAARRAVGARD 306          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A836CET2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CET2_9STRA)

HSP 1 Score: 383 bits (984), Expect = 6.070e-129
Identity = 199/240 (82.92%), Postives = 215/240 (89.58%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGA-----AIAGVGG-GAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQK 705
            A DS ELLALQRIDETCMQLQQQGNYL+ALECMERGLVLRQHFFGSDS+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD  G+AVT NNLACYYRR+GKLH+ALQYL +ALKIEA++GSRV+ PADTHLNTCAVLSQ+GRHQGAL+HAQSALILLQEELFGGG+     + AG G  G G     PRADR+AVLAIAYHNMGVEQEFLK+F+HSLQSYRKGVEVAQK
Sbjct:    3 AADSAELLALQRIDETCMQLQQQGNYLEALECMERGLVLRQHFFGSDSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDAVGKAVTLNNLACYYRRQGKLHAALQYLQRALKIEARLGSRVQTPADTHLNTCAVLSQLGRHQGALDHAQSALILLQEELFGGGSRALPSSCAGDGELGLGLSQASPRADRVAVLAIAYHNMGVEQEFLKRFDHSLQSYRKGVEVAQK 242          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S2CPG4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPG4_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.220e-128
Identity = 200/263 (76.05%), Postives = 229/263 (87.07%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSTMR 798
            ++ ELLALQRIDETC QLQ QGNYL+ALECMERGLVLRQHFFG+DS+EVW ACK+VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD+AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE K+  +V++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL       + V G    G++ P+ADRIAVLAIAYHN+GVE EFLKKF+ SLQSYRKGVEV++++LG +HA+TVTLRNS +AARRAI  RD   R
Sbjct:    7 NNAELLALQRIDETCKQLQTQGNYLEALECMERGLVLRQHFFGADSDEVWRACKVVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDNAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIENKL-DQVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEEL-------SRVLGPMADGNEAPKADRIAVLAIAYHNVGVEYEFLKKFDQSLQSYRKGVEVSERFLGPDHAITVTLRNSCIAARRAIMVRDPQAR 261          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S2RTK0_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RTK0_9STRA)

HSP 1 Score: 383 bits (984), Expect = 1.260e-128
Identity = 200/262 (76.34%), Postives = 228/262 (87.02%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSTMR 798
            + ELLALQRIDETC +LQQQGNYL+ALECMERGLVLRQHFFG++S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLHSALQYL  ALKIEAK+ +RV++PADT+LNTCAVLSQ+GRHQ ALEHAQ ALILLQEEL       + V G    G + P+ADRIAVLAI+YHN+GVE EFLKKF+ SLQSYRKGVEVA+++LG  HA+T+TLRNS +AA+RAI ARD  +R
Sbjct:   16 NAELLALQRIDETCRKLQQQGNYLEALECMERGLVLRQHFFGAESDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHSALQYLQNALKIEAKL-ARVDNPADTYLNTCAVLSQLGRHQSALEHAQQALILLQEEL-------SRVVGPMADGKEAPKADRIAVLAISYHNVGVEYEFLKKFDQSLQSYRKGVEVAERFLGSEHAITITLRNSCIAAKRAIMARDPHVR 269          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S4A6K0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K0_9STRA)

HSP 1 Score: 373 bits (958), Expect = 6.500e-125
Identity = 198/263 (75.29%), Postives = 221/263 (84.03%), Query Frame = 1
Query:   10 DSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDSTMR 798
            D+ ELLALQRIDETC   QQ G YL+ALECMERGLVLRQHFFG+ S+EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTERD AGRAVT+NNLACYYRR+GKLH+ALQYL KALKIE ++ S V++PADT+LN CAVLSQ+GRHQ ALEHAQ ALILLQEEL       + V G   AG  PP+ADR+AVLAIAYHN+GVEQEFLKK   SLQSYRKGVEVA++YLGG+HA+T TLRNS +AARR + ARD   R
Sbjct:   15 DNAELLALQRIDETCTNFQQNGQYLEALECMERGLVLRQHFFGAGSDEVWRACKTVGEMCNLLAMTYLQQEDFAMVLELLKKAEILTERDPAGRAVTFNNLACYYRRQGKLHAALQYLQKALKIEGRLES-VDNPADTYLNACAVLSQLGRHQSALEHAQQALILLQEEL-------SSVLGSDNAG--PPKADRVAVLAIAYHNVGVEQEFLKKHNQSLQSYRKGVEVAERYLGGDHAITSTLRNSCVAARRTMLARDPQAR 267          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S1XJL3_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJL3_9STRA)

HSP 1 Score: 375 bits (962), Expect = 6.890e-123
Identity = 194/262 (74.05%), Postives = 227/262 (86.64%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGG-AGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARD 786
            + ++ ELLALQRIDETC+QLQQ GNYL+ALECMERGLVLRQHFFGSDS EVWSAC+ VGEMCNLLAMTYLQQ+D+ MVLELLKKAEILTERDD GRAVT+NN ACYYRR+GKLH+ALQ+L KAL+IE+++   V + ADT+LNTCAVLSQ+GRHQ ALEHAQ+ALILLQEELF G    AG+GG  AG     P  DRIAVLAIAYHN+GVEQEFLKKFE SL SYRKG++VA+++LGG+HA+ +TLRNS  AARRA +++D
Sbjct:  112 SNETAELLALQRIDETCVQLQQSGNYLEALECMERGLVLRQHFFGSDSNEVWSACRTVGEMCNLLAMTYLQQQDYAMVLELLKKAEILTERDDKGRAVTFNNFACYYRRQGKLHAALQFLQKALRIESRLVD-VPNAADTYLNTCAVLSQLGRHQSALEHAQNALILLQEELFHGIEGGAGMGGEEAGLAPPNPPKDRIAVLAIAYHNIGVEQEFLKKFEMSLTSYRKGIQVAERFLGGDHAIALTLRNSLTAARRAFASKD 372          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A7S3HH21_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HH21_9STRA)

HSP 1 Score: 357 bits (916), Expect = 2.740e-118
Identity = 184/256 (71.88%), Postives = 219/256 (85.55%), Query Frame = 1
Query:   13 SVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISA 780
            + E+LALQR+DET  QLQ+QGNYL+ALECMERGLVLRQHFFG+DS EVW ACK VGEMCNLLAMTYLQQEDF MVLELLKKAEILTE+D+AGRA T+NNLACYYRR+GKLH+ALQYL KALKIE+ + + V++PADTH+N CAVLSQ+GRHQ AL+HAQ+A+ILLQEEL     +  GV G A     PP+ADRIAVLAIAYHN+GVEQEFLK++E S+ SY+KGVEVA++YLG  HA+ VTL NS +AA++  +A
Sbjct:    4 NAEVLALQRLDETSAQLQKQGNYLEALECMERGLVLRQHFFGADSPEVWKACKTVGEMCNLLAMTYLQQEDFNMVLELLKKAEILTEKDEAGRAATFNNLACYYRRQGKLHAALQYLQKALKIESGL-TNVQNPADTHINACAVLSQLGRHQTALDHAQNAIILLQEELL----SPPGVVGAA-----PPQADRIAVLAIAYHNIGVEQEFLKRYEQSVLSYKKGVEVAERYLGAKHAICVTLNNSLVAAKKQAAA 249          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A024U4G6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4G6_9STRA)

HSP 1 Score: 323 bits (827), Expect = 8.750e-105
Identity = 176/262 (67.18%), Postives = 201/262 (76.72%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRAISARDS 789
            A +  EL ALQR+D  C +LQQ+G Y +ALECME+GLVLRQHFFGSDS EV  ACK VG+MCNLLAMTYLQQE+F +VLELLKKAEILTER  AGRAVT NN ACYYRR+G LH AL +L +AL IEAK+   V + ADTHLN CAVLSQ+GRHQGALE AQ+ALILL EELF   A   G   G+   D   + DRIAVL IAYHN+GVEQEFLKK E S+ SYRKG EVA KYLG +H + +TLRNS + A RA+ AR S
Sbjct:   27 AVEDQELYALQRLDTKCTELQQEGKYTEALECMEKGLVLRQHFFGSDSPEVRDACKTVGDMCNLLAMTYLQQENFPIVLELLKKAEILTERHPAGRAVTLNNFACYYRRQGNLHKALTHLTEALAIEAKL-EHVPNRADTHLNMCAVLSQLGRHQGALEQAQAALILLHEELFS--APTPGNQHGSPVADASVKLDRIAVLGIAYHNVGVEQEFLKKLELSIHSYRKGAEVAAKYLGESHGMVITLRNSLVTATRALEARAS 285          
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Match: A0A2R5G2B1_9STRA (Clustered mitochondria protein-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2B1_9STRA)

HSP 1 Score: 341 bits (875), Expect = 3.870e-103
Identity = 178/256 (69.53%), Postives = 211/256 (82.42%), Query Frame = 1
Query:    4 ATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSEEVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVTYNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLSQIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIAVLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNSTMAARRA 771
            A  + ELLAL RIDET  +LQQQG YL+ALECMERGLVLRQHFFG  S+EVW+ACK VG+MCNLLAMTYLQQE+F MVLELLKKAEILTERD+ GRAVTYNNLACY+RR GKLH+ALQYL KALK+E+++   V + ADTHLN CAVLSQ+GRH GALEHAQ+ALI LQEELF G  + +     + A       DRIAVLAIAYHN+GVEQEFLK+FE ++ SYRKGV++++ +LG +H +TVTLRNS +AAR+A
Sbjct:  440 AEANAELLALHRIDETSTRLQQQGKYLEALECMERGLVLRQHFFGPSSDEVWAACKTVGQMCNLLAMTYLQQEEFSMVLELLKKAEILTERDEHGRAVTYNNLACYFRRTGKLHAALQYLQKALKVESRL-ENVTNRADTHLNLCAVLSQLGRHAGALEHAQAALIQLQEELFPGALSASAKSSSSAA---LASTDRIAVLAIAYHNIGVEQEFLKRFEMAIDSYRKGVDISETHLGTDHGITVTLRNSYLAARQA 691          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1716.4771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY8_ECTSI4.460e-14994.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3YLC4_HETAK2.060e-13077.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CET2_9STRA6.070e-12982.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2CPG4_9STRA1.220e-12876.05Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2RTK0_9STRA1.260e-12876.34Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A7S4A6K0_9STRA6.500e-12575.29Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1XJL3_9STRA6.890e-12374.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3HH21_9STRA2.740e-11871.88Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A024U4G6_9STRA8.750e-10567.18Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A2R5G2B1_9STRA3.870e-10369.53Clustered mitochondria protein-like n=1 Tax=Hondae... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1716contigL-elsbetiae_contig1716:4589..7886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.5
Seed ortholog evalue6e-119
Seed eggNOG ortholog2880.D8LLY8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs28ZWJ@1,2R6RA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-14_002170.1
Exons5
Model size1335
Cds size1335
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1716.4771.1prot_L-elsbetiae_contig1716.4771.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1716 4589..7886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.311908-CDS-L-elsbetiae_contig1716:4588..49401622815715.311908-CDS-L-elsbetiae_contig1716:4588..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 4589..4940 -
1691683055.4611278-CDS-L-elsbetiae_contig1716:4588..49401691683055.4611278-CDS-L-elsbetiae_contig1716:4588..4940Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 4589..4940 -
1622815715.3251863-CDS-L-elsbetiae_contig1716:5412..57021622815715.3251863-CDS-L-elsbetiae_contig1716:5412..5702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 5413..5702 -
1691683055.4721353-CDS-L-elsbetiae_contig1716:5412..57021691683055.4721353-CDS-L-elsbetiae_contig1716:5412..5702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 5413..5702 -
1622815715.3354344-CDS-L-elsbetiae_contig1716:5941..62411622815715.3354344-CDS-L-elsbetiae_contig1716:5941..6241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 5942..6241 -
1691683055.484627-CDS-L-elsbetiae_contig1716:5941..62411691683055.484627-CDS-L-elsbetiae_contig1716:5941..6241Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 5942..6241 -
1622815715.348701-CDS-L-elsbetiae_contig1716:7165..74861622815715.348701-CDS-L-elsbetiae_contig1716:7165..7486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 7166..7486 -
1691683055.5033014-CDS-L-elsbetiae_contig1716:7165..74861691683055.5033014-CDS-L-elsbetiae_contig1716:7165..7486Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 7166..7486 -
1622815715.3608408-CDS-L-elsbetiae_contig1716:7814..78861622815715.3608408-CDS-L-elsbetiae_contig1716:7814..7886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 7815..7886 -
1691683055.5154035-CDS-L-elsbetiae_contig1716:7814..78861691683055.5154035-CDS-L-elsbetiae_contig1716:7814..7886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1716 7815..7886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1716.4771.1

>prot_L-elsbetiae_contig1716.4771.1 ID=prot_L-elsbetiae_contig1716.4771.1|Name=mRNA_L-elsbetiae_contig1716.4771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=445bp
MATDSVELLALQRIDETCMQLQQQGNYLQALECMERGLVLRQHFFGSDSE
EVWSACKIVGEMCNLLAMTYLQQEDFGMVLELLKKAEILTERDDAGRAVT
YNNLACYYRRRGKLHSALQYLHKALKIEAKMGSRVEHPADTHLNTCAVLS
QIGRHQGALEHAQSALILLQEELFGGGAAIAGVGGGAGAGDQPPRADRIA
VLAIAYHNMGVEQEFLKKFEHSLQSYRKGVEVAQKYLGGNHAVTVTLRNS
TMAARRAISARDSTMREELIRRSNRRPRAGGGGGGGGGERGGRPRESKSN
VGTGVLSHALSTARLALPWQPCGPFSARTQQQGHERPFESLHESPQEGED
EDDAGGGGGNEKAEYDERAETDRVAKGLMENTALEPSPPPAAAAVGAAAE
AGGGRAAIDEDLPEDAGGEVGNNKLLDGDSTLGGMISPRPAEQAD
back to top

mRNA from alignment at L-elsbetiae_contig1716:4589..7886-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1716.4771.1 ID=mRNA_L-elsbetiae_contig1716.4771.1|Name=mRNA_L-elsbetiae_contig1716.4771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3298bp|location=Sequence derived from alignment at L-elsbetiae_contig1716:4589..7886- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACAGACAGCGTGGAGCTGCTCGCTTTACAGCGTATCGACGAAAC ATGCATGCAACTTCAGCAGCAGGTTCGTTTCCGAGTGGGCCCTGAGTTTA TCGAGATACATCCGGTTTGCGTCGGTCCTTCTGTGCTTTGTTCACACGGT AGCACCTCTTTCCCCACAAAACTAAGCAGTGATGGCCCCCGTACAGTAGC GCTCTTGATGCACACACCTACCTCACTTCAACCTGGTTGATTGCCACTAA CATTAGCGTCTAGACTAGACTATGTAGATAGATATCTCATGTGTAGATAC GTACAGATGTGTCCATGTACGTAGTACATGAAGTAGCTTTCCAGCTGTAA CTAGTCGATATTGATCGTCTTACACGCGCACACCTTATTGTCACCCACAG GGAAACTACTTGCAAGCGCTGGAATGCATGGAGCGGGGGCTTGTTCTTCG GCAGCACTTTTTCGGCAGCGACAGTGAGGAGGTGTGGAGCGCCTGCAAGA TCGTTGGCGAGATGTGCAACCTTCTTGCCATGACCTACCTGCAGCAGGAG GACTTCGGCATGGTACTCGAGTTGTTGAAGAAGGCGGAAATTCTCACCGA GAGGGACGACGCCGGTCGGGCGGTGACGTACAACAATCTGGCGTGCTACT ACCGGCGCCGCGGAAAGCTACACTCTGCGCTGCAGTATCTCCACAAAGCT CTCAAAATCGAAGCGAAAATGGTAAGTTAAGAAGTTCCTGGAGAGAACGC GAGAGTACATAAGAGAGCCCCCCGGTTATTTTTTCTCAGTTTTGCCATTC AACAGGGTGGTTTTAATGTGGTTGAGCAGAGGCAGAATCTCTATCTATCG GTGCTTTTATATCTAGACTAGTAAATATGTAGCTACATCTATAGGCTAGT AGAGTCTAATGGGGACATGACCGCTAGCTTCACCTGGCAAGGTCTGCAGG TTGATATTTCACGCAGGATGTAGAGATGAACATACCGGACATACAACGTT GTTACTCGGCAGAACGCTACATAGACCAACCATTATCTTGTGAACGCCTC TTGACAATGAATACGATAGTCTAGTCATGTCTCTGCCGAGTGAGATTTCA AAAAATGAGCATGTGCAGGCTGTTTTCAGCGTATTTGCGATGCTCAGCCC TTTCAACTGGGTCCGGCCCCAGATGATATTTGCGAAGCTATTCTGCGCAC TACGTGCTCGGCCCAGATCTATTCCATGCGTCCTCACGCAACATGCCTGA ATAGTGGAAACATTGCTGTCGTCCCCGATCTGAAGACGCATCCAGACGAA CACAACCACAATTCCGTTGATAACGTGGATTGCGCGGCCATCCTCCGTGG TACCGTGAAACGTGTACGATACTAGTTGTGACTGCTGTCACCGTTGACAG AATCGATGGCATTTACACTTTCGACGGGCCAAGAAACTCGGAAAAAACTA GAGCAGAACCATCTACCCGGAAACCGCATAATATGCGGAGCGAGTGCTTG CCGCGAACCAAAACCAATTATCAAATAAAAGATAAGTAGATAGATACACC CGCCCTCGACTGTTGACAAATCATTTTTCCTCTACCTCCCACCCCCACCG TGTTGCCCTGAATTATTTTCTGTAACGACGGCTGGCGATGGCCAGGGTTC ACGCGTTGAGCACCCGGCAGACACCCACCTCAACACGTGTGCGGTGCTCT CGCAAATCGGGCGACATCAGGGAGCTTTGGAGCATGCGCAGTCTGCGCTC ATCCTTCTGCAGGAAGAACTCTTTGGGGGCGGGGCAGCGATTGCAGGGGT TGGAGGGGGGGCAGGAGCGGGAGATCAGCCCCCGCGCGCCGATCGAATAG CCGTGCTGGCGATTGCCTACCACAACATGGGCGTGGAGCAGGAGTTCCTC AAGAAGTTCGAGCACAGTCTGCAGTCGTACAGGAAAGGGGTCGAGGTGGG CGAGCGTATCGTACAAAAACGCATATTTTCATGGTCAACAGCTTGTTGGA TTGTGCACGCTGTTCCCTCGTGATGCACGGGTGCACGGGACCCGACGAGG AGCGGCGGCGTGACGAAATAGTCGGCAGCCCCGCCGACCCGATGCAAAAC TGTTTGCCCACAAATTGTTAATCAGTAAACAAGCTAAAATACCTATGTTT CACTGTTTTTTTGCACGCGTCCAACGACGCGAAGGTGGCCCAGAAGTACT TGGGAGGAAACCACGCCGTCACCGTCACGCTCCGCAACTCTACCATGGCC GCGCGCCGAGCAATAAGCGCAAGAGATAGTACAATGCGAGAGGAACTTAT TCGTCGCAGTAATCGGAGGCCGCGCGCAGGCGGCGGCGGCGGCGGGGGCG GAGGAGAGCGAGGCGGCCGGCCGCGGGAATCGAAGTCCAACGTAGGGACG GGCGTTCTGAGCCACGCCTTATCAACCGCAAGGTTAGCTTTACCGTGGCA GCCTTGCGGGCCGTTTTCCGCGCGGTATTGCTTCAACTCGTAGTGCCCCT TTCCTTCCCTTTAACCACTTTCTCGGCGGATTGGCGTTTCGTGTGAACGA GTCGTATATGTATGTACTTCTATGTGCTTCGAAACGAAGCTCACCGTGAT TTCGATGAACACATTCCGACTGTCGGAAACGCCTCTCAGGCGGGGACTCC CGAATGCTCCAAGCCCCAATCCGTGATGGCCATTTCTGCTCTTTTGTCCC CGCTTTTCGTGCTCCCTTTTTGGCACCTCGTGAAAAAGGAAGGAATAAAG TAGAGAGGTCGAACACCCTCTACATGGACCCAGGGCGCATACCGAGAAGG CCAACAGCAAAGAGACAGCTGATACTGTCCATTTTGATCCGTATTTACCT ATCGAACCACTTCTCAGGACACATCCAAGCGCAGTACCCGGCCTACCACT CACTCAAGCGTTTATTGTGTGCCATACATCGTTACCACCGCTGCAGCACA CAGCAGCAGGGGCACGAGCGTCCATTCGAGAGTCTGCACGAAAGTCCACA GGAGGGTGAGGACGAAGACGACGCCGGCGGCGGAGGCGGCAACGAGAAGG CGGAATACGACGAGAGGGCCGAAACGGACCGCGTCGCAAAGGGGCTCATG GAGAACACGGCCCTAGAGCCGTCTCCACCACCGGCGGCAGCAGCAGTGGG GGCGGCAGCGGAGGCGGGGGGGGGAAGGGCGGCGATAGATGAGGACCTGC CCGAGGACGCGGGTGGGGAAGTAGGAAACAACAAGTTGCTCGACGGTGAC TCAACCCTTGGAGGGATGATTTCGCCAAGGCCAGCAGAGCAGGCCGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1716:4589..7886-

>mRNA_L-elsbetiae_contig1716.4771.1 ID=mRNA_L-elsbetiae_contig1716.4771.1|Name=mRNA_L-elsbetiae_contig1716.4771.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2670bp|location=Sequence derived from alignment at L-elsbetiae_contig1716:4589..7886- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGACAGACAGCGTGGAGCTGCTCGCTTTACAGCGTATCGACGAAAC
ATGCATGCAACTTCAGCAGCAGATGGCGACAGACAGCGTGGAGCTGCTCG
CTTTACAGCGTATCGACGAAACATGCATGCAACTTCAGCAGCAGGGAAAC
TACTTGCAAGCGCTGGAATGCATGGAGCGGGGGCTTGTTCTTCGGCAGCA
CTTTTTCGGCAGCGACAGTGAGGAGGTGTGGAGCGCCTGCAAGATCGTTG
GCGAGATGTGCAACCTTCTTGCCATGACCTACCTGCAGCAGGAGGACTTC
GGCATGGTACTCGAGTTGTTGAAGAAGGCGGAAATTCTCACCGAGAGGGA
CGACGCCGGTCGGGCGGTGACGTACAACAATCTGGCGTGCTACTACCGGC
GCCGCGGAAAGCTACACTCTGCGCTGCAGTATCTCCACAAAGCTCTCAAA
ATCGAAGCGAAAATGGGAAACTACTTGCAAGCGCTGGAATGCATGGAGCG
GGGGCTTGTTCTTCGGCAGCACTTTTTCGGCAGCGACAGTGAGGAGGTGT
GGAGCGCCTGCAAGATCGTTGGCGAGATGTGCAACCTTCTTGCCATGACC
TACCTGCAGCAGGAGGACTTCGGCATGGTACTCGAGTTGTTGAAGAAGGC
GGAAATTCTCACCGAGAGGGACGACGCCGGTCGGGCGGTGACGTACAACA
ATCTGGCGTGCTACTACCGGCGCCGCGGAAAGCTACACTCTGCGCTGCAG
TATCTCCACAAAGCTCTCAAAATCGAAGCGAAAATGGGTTCACGCGTTGA
GCACCCGGCAGACACCCACCTCAACACGTGTGCGGTGCTCTCGCAAATCG
GGCGACATCAGGGAGCTTTGGAGCATGCGCAGTCTGCGCTCATCCTTCTG
CAGGAAGAACTCTTTGGGGGCGGGGCAGCGATTGCAGGGGTTGGAGGGGG
GGCAGGAGCGGGAGATCAGCCCCCGCGCGCCGATCGAATAGCCGTGCTGG
CGATTGCCTACCACAACATGGGCGTGGAGCAGGAGTTCCTCAAGAAGTTC
GAGCACAGTCTGCAGTCGTACAGGAAAGGGGTCGAGGGTTCACGCGTTGA
GCACCCGGCAGACACCCACCTCAACACGTGTGCGGTGCTCTCGCAAATCG
GGCGACATCAGGGAGCTTTGGAGCATGCGCAGTCTGCGCTCATCCTTCTG
CAGGAAGAACTCTTTGGGGGCGGGGCAGCGATTGCAGGGGTTGGAGGGGG
GGCAGGAGCGGGAGATCAGCCCCCGCGCGCCGATCGAATAGCCGTGCTGG
CGATTGCCTACCACAACATGGGCGTGGAGCAGGAGTTCCTCAAGAAGTTC
GAGCACAGTCTGCAGTCGTACAGGAAAGGGGTCGAGGTGGCCCAGAAGTA
CTTGGGAGGAAACCACGCCGTCACCGTCACGCTCCGCAACTCTACCATGG
CCGCGCGCCGAGCAATAAGCGCAAGAGATAGTACAATGCGAGAGGAACTT
ATTCGTCGCAGTAATCGGAGGCCGCGCGCAGGCGGCGGCGGCGGCGGGGG
CGGAGGAGAGCGAGGCGGCCGGCCGCGGGAATCGAAGTCCAACGTAGGGA
CGGGCGTTCTGAGCCACGCCTTATCAACCGCAAGGTTAGCTTTACCGTGG
CAGCCTTGCGGGCCGTTTTCCGCGCGGTGGCCCAGAAGTACTTGGGAGGA
AACCACGCCGTCACCGTCACGCTCCGCAACTCTACCATGGCCGCGCGCCG
AGCAATAAGCGCAAGAGATAGTACAATGCGAGAGGAACTTATTCGTCGCA
GTAATCGGAGGCCGCGCGCAGGCGGCGGCGGCGGCGGGGGCGGAGGAGAG
CGAGGCGGCCGGCCGCGGGAATCGAAGTCCAACGTAGGGACGGGCGTTCT
GAGCCACGCCTTATCAACCGCAAGGTTAGCTTTACCGTGGCAGCCTTGCG
GGCCGTTTTCCGCGCGCACACAGCAGCAGGGGCACGAGCGTCCATTCGAG
AGTCTGCACGAAAGTCCACAGGAGGGTGAGGACGAAGACGACGCCGGCGG
CGGAGGCGGCAACGAGAAGGCGGAATACGACGAGAGGGCCGAAACGGACC
GCGTCGCAAAGGGGCTCATGGAGAACACGGCCCTAGAGCCGTCTCCACCA
CCGGCGGCAGCAGCAGTGGGGGCGGCAGCGGAGGCGGGGGGGGGAAGGGC
GGCGATAGATGAGGACCTGCCCGAGGACGCGGGTGGGGAAGTAGGAAACA
ACAAGTTGCTCGACGGTGACTCAACCCTTGGAGGGATGATTTCGCCAAGG
CCAGCAGAGCAGGCCGACCACACAGCAGCAGGGGCACGAGCGTCCATTCG
AGAGTCTGCACGAAAGTCCACAGGAGGGTGAGGACGAAGACGACGCCGGC
GGCGGAGGCGGCAACGAGAAGGCGGAATACGACGAGAGGGCCGAAACGGA
CCGCGTCGCAAAGGGGCTCATGGAGAACACGGCCCTAGAGCCGTCTCCAC
CACCGGCGGCAGCAGCAGTGGGGGCGGCAGCGGAGGCGGGGGGGGGAAGG
GCGGCGATAGATGAGGACCTGCCCGAGGACGCGGGTGGGGAAGTAGGAAA
CAACAAGTTGCTCGACGGTGACTCAACCCTTGGAGGGATGATTTCGCCAA
GGCCAGCAGAGCAGGCCGAC
back to top