prot_L-elsbetiae_contig16737.4547.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16737.4547.1
Unique Nameprot_L-elsbetiae_contig16737.4547.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length74
Homology
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BLAST of mRNA_L-elsbetiae_contig16737.4547.1 vs. uniprot
Match: A0A6H5JS43_9PHAE (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS43_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.830e-7
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   24 SQGASKKRQGIIWGKTMASFKGRSTQDLISRLADVVELHSTVAPQDATV 72
            S+ A+K+RQG+IWGKT     G   + LI  LAD+VELHSTVAP+DA +
Sbjct:   52 SKPATKRRQGVIWGKTKDKLFGN--RRLILALADMVELHSTVAPEDAFI 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16737.4547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS43_9PHAE3.830e-757.14Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..74
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.654

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16737contigL-elsbetiae_contig16737:502..723 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16737.4547.1mRNA_L-elsbetiae_contig16737.4547.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16737 330..723 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16737.4547.1 ID=prot_L-elsbetiae_contig16737.4547.1|Name=mRNA_L-elsbetiae_contig16737.4547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MISRSLVCVLCFGCALSSQSEISSQGASKKRQGIIWGKTMASFKGRSTQD
LISRLADVVELHSTVAPQDATVRR
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