mRNA_L-elsbetiae_contig16737.4547.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16737.4547.1
Unique NamemRNA_L-elsbetiae_contig16737.4547.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16737.4547.1 vs. uniprot
Match: A0A6H5JS43_9PHAE (Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS43_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.420e-6
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 2 
Query:  242 SQGASKKRQGIIWGKTMASFKGRSTQDLISRLADVVELHSTVAPQDATV 388
            S+ A+K+RQG+IWGKT     G   + LI  LAD+VELHSTVAP+DA +
Sbjct:   52 SKPATKRRQGVIWGKTKDKLFGN--RRLILALADMVELHSTVAPEDAFI 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16737.4547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS43_9PHAE2.420e-657.14Alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16737contigL-elsbetiae_contig16737:330..723 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size395
Cds size222
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.6581485-UTR-L-elsbetiae_contig16737:329..5011622815695.6581485-UTR-L-elsbetiae_contig16737:329..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16737 330..501 +
1691683043.39297-UTR-L-elsbetiae_contig16737:329..5011691683043.39297-UTR-L-elsbetiae_contig16737:329..501Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16737 330..501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.6715713-CDS-L-elsbetiae_contig16737:501..7231622815695.6715713-CDS-L-elsbetiae_contig16737:501..723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16737 502..723 +
1691683043.4034202-CDS-L-elsbetiae_contig16737:501..7231691683043.4034202-CDS-L-elsbetiae_contig16737:501..723Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16737 502..723 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16737.4547.1prot_L-elsbetiae_contig16737.4547.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16737 502..723 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16737.4547.1

>prot_L-elsbetiae_contig16737.4547.1 ID=prot_L-elsbetiae_contig16737.4547.1|Name=mRNA_L-elsbetiae_contig16737.4547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
MISRSLVCVLCFGCALSSQSEISSQGASKKRQGIIWGKTMASFKGRSTQD
LISRLADVVELHSTVAPQDATVRR
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mRNA from alignment at L-elsbetiae_contig16737:330..723+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16737.4547.1 ID=mRNA_L-elsbetiae_contig16737.4547.1|Name=mRNA_L-elsbetiae_contig16737.4547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=394bp|location=Sequence derived from alignment at L-elsbetiae_contig16737:330..723+ (Laminarionema elsbetiae ELsaHSoW15)
GTTCACCTCGAGCAGGCTCGGCCAGCCTTTCACTGAGCTCTCCCCTCTCC
CGAAAGCATGGAGGGAGACTGACGAGCCTTCTCTAACCTACTAGTTAGGC
GATCGGTATAAGCCTTACACCGGTCCACTCGTGGAGGAGCTGACATGGAC
GTGTCTGAAATGCACACCACCCATGATCTCTCGCTCTCTCGTGTGTGTGC
TTTGTTTCGGTTGTGCTCTGAGCAGCCAGAGCGAGATATCGTCGCAAGGA
GCCTCGAAAAAGCGACAAGGTATTATCTGGGGCAAGACCATGGCCTCTTT
TAAAGGACGCTCTACCCAGGACCTCATCTCCAGGCTTGCAGATGTCGTAG
AGCTGCACTCCACAGTTGCACCCCAAGATGCTACGGTCAGGCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16737:330..723+

>mRNA_L-elsbetiae_contig16737.4547.1 ID=mRNA_L-elsbetiae_contig16737.4547.1|Name=mRNA_L-elsbetiae_contig16737.4547.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig16737:330..723+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTCTCGCTCTCTCGTGTGTGTGCTTTGTTTCGGTTGTGCTCTGAG
CAGCCAGAGCGAGATATCGTCGCAAGGAGCCTCGAAAAAGCGACAAGGTA
TTATCTGGGGCAAGACCATGGCCTCTTTTAAAGGACGCTCTACCCAGGAC
CTCATCTCCAGGCTTGCAGATGTCGTAGAGCTGCACTCCACAGTTGCACC
CCAAGATGCTACGGTCAGGCGAATGATCTCTCGCTCTCTCGTGTGTGTGC
TTTGTTTCGGTTGTGCTCTGAGCAGCCAGAGCGAGATATCGTCGCAAGGA
GCCTCGAAAAAGCGACAAGGTATTATCTGGGGCAAGACCATGGCCTCTTT
TAAAGGACGCTCTACCCAGGACCTCATCTCCAGGCTTGCAGATGTCGTAG
AGCTGCACTCCACAGTTGCACCCCAAGATGCTACGGTCAGGCGA
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