mRNA_L-elsbetiae_contig16726.4542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16726.4542.1
Unique NamemRNA_L-elsbetiae_contig16726.4542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A6H5L399_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L399_9PHAE)

HSP 1 Score: 452 bits (1163), Expect = 2.150e-156
Identity = 228/249 (91.57%), Postives = 239/249 (95.98%), Query Frame = 1
Query:    1 RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGVTR 747
            RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVK QMD+K+ +SPY+SITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVA+QSIY EGGL+GFFGKGGLK QWARDIPYAMVTLLVYETLQKAAARRKGP   PG+  K AKANP+ENMVIGAIAGG+GSLVTNPMDMIKTRMMTSPELYAGPMDAAW+ALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRS+LGVTR
Sbjct:  243 RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKNQMDAKQGISPYLSITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVAIQSIYHEGGLVGFFGKGGLKTQWARDIPYAMVTLLVYETLQKAAARRKGP---PGTKKKGAKANPIENMVIGAIAGGMGSLVTNPMDMIKTRMMTSPELYAGPMDAAWKALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSILGVTR 488          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A836CPL2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL2_9STRA)

HSP 1 Score: 291 bits (744), Expect = 8.990e-96
Identity = 146/248 (58.87%), Postives = 184/248 (74.19%), Query Frame = 1
Query:    4 MTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGVTR 747
            +    AGR LL R GV  LY GLGV+LVG+MP++G+YFG+YQ+ + ++D    +SP  SI +SAG+GNF+ASFFRVPYE+VKQRLQ G YP T  AL+ +Y +GG+  FFG+GG+  Q ARD+PYAMVTL+VYE+LQ  AARR+    G       AK + LE M+IGAIAGGVG+L TNPMD++KTRMMT+P LYA   DAA   L  +G +AF +GATPRLLHK+PAN  FF AYE FR++LGV R
Sbjct:   42 LNFFTAGRLLLKRNGVGALYSGLGVSLVGAMPSIGIYFGIYQYCRGKLDQSPRLSPLGSIALSAGIGNFVASFFRVPYEIVKQRLQAGVYPDTATALRIMYADGGVGAFFGRGGIATQLARDVPYAMVTLMVYESLQ-TAARRRAAARG------AAKPSHLETMLIGAIAGGVGTLATNPMDVVKTRMMTAPHLYASAWDAAVVTLRADGARAFARGATPRLLHKVPANGLFFAAYELFRTLLGVRR 282          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: W7TPC5_9STRA (Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC5_9STRA)

HSP 1 Score: 256 bits (654), Expect = 3.000e-80
Identity = 144/257 (56.03%), Postives = 180/257 (70.04%), Query Frame = 1
Query:    4 MTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKENMSP-----YISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYR-EGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAA-RRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSK----EGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGV 741
            + +L+A +DL++R GV  LY GLGVTLVGS+PAV VYFG+YQ VKK +   + + P      + +  SAGVGN +AS FRVPYEVVKQRLQ G Y +T  AL+++YR EGGLL FFG  G+  Q  RD+PYA+VTLL YE++++  A RR GPGE  G   K + A  LE+ V+GA+AGGVGSLV+NPMD++KTR+MT P LY       W A+SK    EGP AF KG  PRLLHK+PANA FF  YE FR +L V
Sbjct:  175 LGMLEAAQDLVSRKGVSALYTGLGVTLVGSIPAVSVYFGVYQAVKKAL--LQALPPGLGWSLLGVAASAGVGNTVASIFRVPYEVVKQRLQAGMYVSTGQALRTMYRTEGGLLAFFGTSGVASQILRDVPYAIVTLLTYESMRRTRAERRLGPGESKGGLTKGSTA--LEDSVMGALAGGVGSLVSNPMDVVKTRVMTQPGLYP----TVWSAVSKVWVEEGPSAFFKGTVPRLLHKVPANAIFFATYEIFRGLLRV 423          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A7S1BCN2_9STRA (Hypothetical protein n=3 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BCN2_9STRA)

HSP 1 Score: 223 bits (569), Expect = 6.470e-68
Identity = 125/251 (49.80%), Postives = 162/251 (64.54%), Query Frame = 1
Query:   46 GVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMD----------SK---------ENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYA-GPMDAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLG 738
            G+ +LY GLGVT+VGSMP+VG+YFG+Y + K+++           SK         E      S  +SA +GN +ASF RVP+EVVKQ+LQ G +P T +AL+S+  EGGL  FF  GG+  Q ARDIPYA+ TL+ YE +++   R   P E      KE  ++   NMV GA AGG+GS +TNPMD++KTR+ TSPE+Y  G +  A   L +EGP AFLKG  PRL+HKIPANA FF+ YEFFR VL 
Sbjct:  130 GIGQLYAGLGVTVVGSMPSVGLYFGVYSYCKQRIGPALLRKYDLYSKDIGFEGKHWEGTVVVFSQALSAAIGNTVASFSRVPFEVVKQKLQTGVFPNTFIALRSMINEGGLRSFFPVGGVSAQMARDIPYAIFTLVTYEYIKQKWVR---PNEL-----KEGASSAWRNMVTGATAGGIGSFLTNPMDVVKTRLQTSPEIYGRGVLQCAMTTLQEEGPAAFLKGMRPRLMHKIPANAVFFLWYEFFRRVLN 372          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A7S3V944_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V944_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.470e-66
Identity = 126/264 (47.73%), Postives = 172/264 (65.15%), Query Frame = 1
Query:    4 MTLLQAGRDLLAR-GGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQM------------DSKENMSPY----ISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAK-ANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPM-DAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLG 738
            +TL QA     +R GGV ELY GLGV+ +G+MP+VG+YFG+Y + K+++            D  + +S      +++  SA +GN IASF RVPYEVVKQ+LQ G+Y +T  AL+ +   GGL  FF  GG+ +Q  RDIPYA+VTLL YE L+     +    E     G+EAK   P ++M+ G +AGG+GS +TNPMD+IKTR+  + ELY+G +   A + L + GP AFL+G+ PRL+HK+PANA FFV YEFFR VLG
Sbjct:  115 LTLKQAANVATSRPGGVLELYAGLGVSAIGAMPSVGLYFGVYSYAKEKIGPFVQNRLGKDEDCVDGLSKAGVRSLTVATSAAIGNTIASFSRVPYEVVKQKLQTGEYSSTFGALKHMCANGGLRSFFPMGGVAIQMYRDIPYAIVTLLTYECLRDHWVNKNE--ELSLKDGQEAKKVAPWKDMIAGGVAGGMGSFMTNPMDVIKTRLQVNSELYSGNVWVCASRTLEEGGPSAFLRGSVPRLIHKVPANACFFVFYEFFRRVLG 376          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A7S2V6F4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6F4_9STRA)

HSP 1 Score: 217 bits (552), Expect = 5.240e-66
Identity = 126/259 (48.65%), Postives = 160/259 (61.78%), Query Frame = 1
Query:    1 RMTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLEN-------MVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGP---MDAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGVTR 747
            ++ +  AG  ++ RGG   LY GLGVT+VGS P+  VYFG Y   ++  D    +   +SI  SAG+GN +AS  R PYE+VKQRLQ G YP T  AL SI R+ G+ GFF   GLK+Q ARDIPYAM+TLLVYETLQ    ++K P               LEN       + IG IAGGVG+ +TNPMD++KTR+MT+     GP      A + L++EG   F +GA PRLLH+IPANA FF  YE FR +LG+ R
Sbjct:   93 QVGMFAAGSQVMQRGGFKALYSGLGVTVVGSAPSSAVYFGTYHCCRRWFDGL-GLQKSVSILASAGIGNTVASCLRAPYELVKQRLQYGMYPNTWTALTSIVRDEGVQGFFMSSGLKIQMARDIPYAMMTLLVYETLQDYV-KKKHP-------------RLLENGKKVWVDLAIGGIAGGVGTWMTNPMDVVKTRIMTAAVGPQGPPLVTTTANKILAEEGLLGFYRGAVPRLLHRIPANAVFFPFYECFRDLLGIKR 336          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: K0R3I4_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R3I4_THAOC)

HSP 1 Score: 211 bits (536), Expect = 3.700e-64
Identity = 120/269 (44.61%), Postives = 169/269 (62.83%), Query Frame = 1
Query:    4 MTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDS----------KENMSPY--------ISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSP----ELYAGPMDAAWQALSKEG-PQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGV 741
            + L +AGR ++ RGGV ELY GL V+ +GSMP+VG+YFG+Y + K+ + S          ++   P         ISI  SA +GN +ASF RVPYEVVKQ LQ G+Y +T+ A+QS++ E GL  FF  GG+ +Q ARDIPYA+ TLL YE L++  A ++          ++       +MV G  +GG+GS +TNPMD++KTR+ T P       +G + A   A+ +EG P AFL+G+ PRLLHK+PAN+ FF+ YEFF+ +L V
Sbjct:   31 LGLFEAGRIVVGRGGVGELYAGLAVSALGSMPSVGLYFGVYSYCKRTVGSAFTRCLGSQRQDGKRPLCSDESLRTISIACSAAIGNTVASFSRVPYEVVKQNLQTGKYSSTVTAMQSMWNESGLRAFFPLGGISVQMARDIPYAIFTLLSYEFLREKWALKRSQ--------QDPNGRWWRDMVAGGASGGLGSYLTNPMDVVKTRIQTPPVGDSTACSGSIMACANAVWEEGGPSAFLRGSVPRLLHKVPANSCFFLFYEFFKRLLRV 291          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A7S3L8P2_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L8P2_9STRA)

HSP 1 Score: 204 bits (520), Expect = 9.270e-61
Identity = 115/249 (46.18%), Postives = 161/249 (64.66%), Query Frame = 1
Query:    4 MTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKE--NMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSKEG-PQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGV 741
            ++++ A R++   GG  + Y GLGVT++G+MP V +YFG+YQ+ KK++ +      +P +++ VSA +GN +ASF RVPYEV+KQ+LQ+G Y TT  AL +  +    +  F KGG+ +Q  RD+PYA+ TLLVYE LQ A               KE       + ++G +AGG GS VTNPMD+IKTR+ T+ +LY G +    +A+  EG   AFL+GA PRL HKIPANAFFF+ YE FR +LGV
Sbjct:  129 LSVVGACREIWNLGGFGKFYAGLGVTVIGAMPGVSLYFGVYQYCKKKLRATPWGERNPLVAVAVSAAIGNSVASFSRVPYEVLKQKLQMGVYDTTWEALVAAAKNPVAM-LFPKGGVAIQMIRDVPYAIATLLVYEMLQGAFT----------GVAKE------RDFLLGGLAGGFGSWVTNPMDVIKTRLQTNSDLYEGSVVVCAKAVWGEGGAAAFLRGAVPRLAHKIPANAFFFLFYETFRRILGV 360          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A7S1UWT0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UWT0_9STRA)

HSP 1 Score: 206 bits (524), Expect = 1.410e-60
Identity = 119/260 (45.77%), Postives = 160/260 (61.54%), Query Frame = 1
Query:    4 MTLLQAGRDLLAR-GGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSK----------ENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEA--KANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSKEG-PQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGV 741
            +TL QA   +++R GG  ELY G+GV +VGSMP+VG+YFG+Y + K+ +  +            +   ++IT SA +GN IASF RVPYEV+KQ+LQ G Y  T  A+  + +  G+ GFF  GG+ +Q  RDIPYAM TLL YE L+               P KE   ++  L +   GA+AGGVGS VTNPMD+IKTR+ T  +LY G +   +     EG P AFL+G+ PRLLHK+PAN  FF+ YE FR++L V
Sbjct:  175 LTLKQAMDLVVSRPGGFFELYAGVGVAVVGSMPSVGLYFGVYSYCKRLIQPRLVPDDPNNKYRGLLMMLTITTSAAIGNTIASFSRVPYEVMKQKLQTGMYTNTWQAMMELAKHDGIRGFFPMGGIGIQMLRDIPYAMTTLLCYELLKVQF-----------QPWKERFKESTSLVDAFTGAVAGGVGSYVTNPMDVIKTRLQTESQLYGGSIMKCFHDTWMEGGPSAFLRGSVPRLLHKVPANGIFFLFYELFRTLLRV 423          
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Match: A0A1Z5K4E5_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K4E5_FISSO)

HSP 1 Score: 201 bits (512), Expect = 3.520e-60
Identity = 109/251 (43.43%), Postives = 160/251 (63.75%), Query Frame = 1
Query:    4 MTLLQAGRDLLAR-GGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDSKE--NMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSIYREGGLLGF-FGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGPGSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPMDAAWQALSKEGP-QAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGV 741
            +T+ +A R++++R GG    Y GLGVT++G+MP+V +YFG+Y + KK + +       P  S+ +SA +GN +ASF RVPYEV+KQ+LQ G Y +T  AL+ I      +   F KGG+ +Q  RD+PYA++TL++YETLQ    +              +++N + +  +G  AGG GS  TNP D+IKTR+ T+ ELY G +      + +EG   AFL+G+ PRL+HK+PANAFFF+ YE FR +LGV
Sbjct:   75 LTIWEACREIMSRPGGFWNFYAGLGVTVIGAMPSVALYFGVYSYCKKTLLNSHWGKKHPTASVALSAAIGNSVASFSRVPYEVLKQQLQTGVYTSTWQALKEISSSKEYMSLLFPKGGIAIQMLRDVPYAVITLMLYETLQNTFHK--------------SRSNKVIDFCVGGAAGGFGSWATNPTDVIKTRLQTNSELYGGSVRTCTAEIWREGGIMAFLRGSVPRLVHKVPANAFFFLFYEGFRQLLGV 311          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16726.4542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L399_9PHAE2.150e-15691.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CPL2_9STRA8.990e-9658.87Mitochondrial carrier domain-containing protein n=... [more]
W7TPC5_9STRA3.000e-8056.03Mitochondrial carrier n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S1BCN2_9STRA6.470e-6849.80Hypothetical protein n=3 Tax=Corethron hystrix Tax... [more]
A0A7S3V944_9STRA3.470e-6647.73Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2V6F4_9STRA5.240e-6648.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K0R3I4_THAOC3.700e-6444.61Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3L8P2_9STRA9.270e-6146.18Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1UWT0_9STRA1.410e-6045.77Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A1Z5K4E5_FISSO3.520e-6043.43Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16726contigL-elsbetiae_contig16726:157..2756 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score459.5
Seed ortholog evalue9.8e-127
Seed eggNOG ortholog2880.D7FJT3
KEGG koko:K15111
KEGG TC2.A.29.18
Hectar predicted targeting categoryother localisation
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Ec32 ortholog descriptionMitochondrial substrate/solute carrier
Ec32 orthologEc-06_010250.1
Exons4
Model size750
Cds size747
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16726.4542.1prot_L-elsbetiae_contig16726.4542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16726 160..2756 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.380944-UTR-L-elsbetiae_contig16726:156..1591622815695.380944-UTR-L-elsbetiae_contig16726:156..159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16726 157..159 +
1691683043.2826092-UTR-L-elsbetiae_contig16726:156..1591691683043.2826092-UTR-L-elsbetiae_contig16726:156..159Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16726 157..159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815695.3927443-CDS-L-elsbetiae_contig16726:159..3741622815695.3927443-CDS-L-elsbetiae_contig16726:159..374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 160..374 +
1691683043.2921026-CDS-L-elsbetiae_contig16726:159..3741691683043.2921026-CDS-L-elsbetiae_contig16726:159..374Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 160..374 +
1622815695.4052768-CDS-L-elsbetiae_contig16726:1084..11781622815695.4052768-CDS-L-elsbetiae_contig16726:1084..1178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 1085..1178 +
1691683043.3004644-CDS-L-elsbetiae_contig16726:1084..11781691683043.3004644-CDS-L-elsbetiae_contig16726:1084..1178Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 1085..1178 +
1622815695.4180245-CDS-L-elsbetiae_contig16726:1744..20741622815695.4180245-CDS-L-elsbetiae_contig16726:1744..2074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 1745..2074 +
1691683043.307992-CDS-L-elsbetiae_contig16726:1744..20741691683043.307992-CDS-L-elsbetiae_contig16726:1744..2074Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 1745..2074 +
1622815695.4312303-CDS-L-elsbetiae_contig16726:2648..27561622815695.4312303-CDS-L-elsbetiae_contig16726:2648..2756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 2649..2756 +
1691683043.316162-CDS-L-elsbetiae_contig16726:2648..27561691683043.316162-CDS-L-elsbetiae_contig16726:2648..2756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16726 2649..2756 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16726.4542.1

>prot_L-elsbetiae_contig16726.4542.1 ID=prot_L-elsbetiae_contig16726.4542.1|Name=mRNA_L-elsbetiae_contig16726.4542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
MTLLQAGRDLLARGGVPELYQGLGVTLVGSMPAVGVYFGLYQFVKKQMDS
KENMSPYISITVSAGVGNFIASFFRVPYEVVKQRLQVGQYPTTMVALQSI
YREGGLLGFFGKGGLKMQWARDIPYAMVTLLVYETLQKAAARRKGPGEGP
GSPGKEAKANPLENMVIGAIAGGVGSLVTNPMDMIKTRMMTSPELYAGPM
DAAWQALSKEGPQAFLKGATPRLLHKIPANAFFFVAYEFFRSVLGVTR*
back to top

mRNA from alignment at L-elsbetiae_contig16726:157..2756+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16726.4542.1 ID=mRNA_L-elsbetiae_contig16726.4542.1|Name=mRNA_L-elsbetiae_contig16726.4542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2600bp|location=Sequence derived from alignment at L-elsbetiae_contig16726:157..2756+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATGACCTTGCTGCAGGCAGGCAGAGACCTTCTGGCGCGCGGGGGGGT GCCCGAGCTCTACCAGGGCCTGGGCGTGACGCTGGTGGGCTCGATGCCTG CGGTGGGAGTGTACTTTGGCCTCTATCAGTTCGTCAAAAAACAGATGGAC AGCAAGGAGAACATGTCTCCGTATATCAGCATCACCGTCAGCGCGGGAGT GGGCAACTTCATTGCAAGGTGCCTACATATATATGACGCGAGGCGATTCG GTTTGGGCTCGTTTTTTTATTTTCGTTCCGTGCTCCGGAGATTGCTCTCT ACATACTCCTCCCCCCTGTGTTCATTTTTTGCCGGATATGTTGTACATGC CTACAACGCCAGGCTTTGCGGTTAAGAAGTACTGCGACACCCCGCGTCAT TCGTTTACTCTCATCTCTGCGCAATGGGTTTGGCGAGTGGTCGTCGGTAC GTGGCAGGCGCAGCAGGCGGCCTCGTTGCCGAATCAAACAAGCTTATAGC AGGTCTCCTCGCTGGTCTGCCGGTTGCGCGCGCGTTACCAAGATGCGAGA GAAGGCTGTTTGTTGCTCCCCGCAGAGTGTACCCGCGCCGAAAGCTAGCT GCCAAAGCGGTCGGGGCTTAAACGGCAAGGTCTTGGCGCAAAGGTCGCGA GGATGATGGCACGACCACCCTCGAGGTTACAGAAGCTCAACTATTTAAGA CCCTCGTGCTGCTGGTGCACAAGGCACACAGCAGCAGCAGCAGCAGCAGC AGTGGCGTAAAAGTGATGTAAGCCCGCTCGCGTCTCTTCGGCCCCTCGAT GCAACTGCTGGGGCGAAACATTTTTCAGAGCCGATTTTCTGCTGGGCTCT CCGTCTGTCCCCCACCCACTCTCCCACCAACCACCCTTGCCCGCACCCTC TCTTCCCTGCCCTGCCGGCTTTTTCCAGCTTCTTCCGAGTGCCGTACGAA GTGGTGAAGCAACGCTTGCAAGTTGGACAGTACCCCACGACCATGGTGGC GCTGCAGTCCATCTACCGAGAGGTAAGAGTTGTGAAAGCAAGAAGGATGC AGCGAGACACCTGCATGTTAAGTCTTGCTTCTGTCGCGGCCGGCGCAGGC TAAGGTTCATCGCCCCGGGGTTTGTTGTTTGTTTTGCTGAGAAAACTGCG CAGTATTTGGGTGGCCCAGATGCTTGTTTTGGGACGGCTGTTGCACGAAA CAGCAGTACTGGTACCTGGCCAAGCTTTTGATAAATCGTTGCTATTAATC GCTCTTTGCCAGCAAGCGGTGCGCAGGAAACTACACGCTACATATTTGGT CCAGCTTGTTCCTTCGAAGGAGCGATTTTTCATTTACTTCTACTTATTTT CCCGTGGTTTCGACAAAAACGCTTTTTTTCGGAGTGGTGAAATCCCGGAA TGTACGTACACCTGTGTAATTTACCACCCTATAGGATGGGGCGGGAAATT AGAAATTAGGTGTTGAAAAAATCGAGGTGAAACAGCCGATGTCCACCTCT TCCCTCTTGCGGGGCCCCTCTTCCCCTCTTTCCAAACGTGGCGGTCGTAT AACGGACCGGCGACCGACCCGACGGTGGTGTGGAGCAGGGAGGCCTGCTC GGGTTCTTTGGGAAGGGGGGGCTCAAGATGCAGTGGGCGCGAGACATCCC GTACGCGATGGTGACGCTCCTGGTGTACGAGACCCTCCAGAAGGCGGCGG CGCGGCGGAAGGGGCCCGGGGAGGGGCCCGGGTCCCCCGGCAAGGAGGCC AAGGCCAACCCCCTCGAGAACATGGTGATCGGCGCGATCGCCGGGGGCGT GGGCTCGCTGGTGACGAACCCCATGGACATGATCAAGACGAGAATGATGA CGTCCCCGGAACTGTACGCCGGGCCAATGGACGCGGCGTGGCAGGCGCTC AGCAAGGAGGGGCCGCAGGTGTGTTTTGTGTCACTGAATGATTGTGTCCC ATCTTTTTTCTTTTCTTTTTTGCCTGTTCGTTGTGTCGTTTTCTATTTTA GTAGTATTTCTTCCCAGGCACGCTTGCATTCTTTCTCCCGCCTGCCTGCC TGCCTGCCTGCCTGCCTGCCTCCTCTCTATCGGCCTCTTCCCTGTGTGCC ATTCCGGCAAGACGGCAGAGGCCTTTTGTGCTGTTTCTTCCAGAAGCGAC CCCGATACGCTCGGTTCAAGGAAGAACTAGGTGACCCCCCCCCCCCGTGT GCGCGCGCGCGGTTGACCACGCGACCGCCCCCCCTGCTGCGGTTCCAGGC TAAGGCGATATGTGTTTTTAGGCTGTGTTCATGCTTGCCAGGTGTTGTCT TGGTTTTATTTCTCCGCTCAGGCCCCCGCAGATGCGGCGTTCTTACCGCA ACCATTTGCTCACATTTGCGCGTGTGTCTTATTATATCTTATCATCGCCT GTGACCTTTTTTCGGGGTCTCGCTGTTGTCTCAATCTTACATCTAGGCTG AATCTTTGCCCCGGCGTTCACGCCCCCCGCACGCACACCCAGGCTTTCCT GAAGGGAGCCACCCCTCGGTTACTCCACAAGATCCCAGCCAACGCCTTCT TCTTCGTGGCGTACGAGTTCTTCCGCAGCGTCCTCGGCGTGACTCGATGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16726:157..2756+

>mRNA_L-elsbetiae_contig16726.4542.1 ID=mRNA_L-elsbetiae_contig16726.4542.1|Name=mRNA_L-elsbetiae_contig16726.4542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig16726:157..2756+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACCTTGCTGCAGGCAGGCAGAGACCTTCTGGCGCGCGGGGGGGTGCC
CGAGCTCTACCAGGGCCTGGGCGTGACGCTGGTGGGCTCGATGCCTGCGG
TGGGAGTGTACTTTGGCCTCTATCAGTTCGTCAAAAAACAGATGGACAGC
AAGGAGAACATGTCTCCGTATATCAGCATCACCGTCAGCGCGGGAGTGGG
CAACTTCATTGCAAGATGACCTTGCTGCAGGCAGGCAGAGACCTTCTGGC
GCGCGGGGGGGTGCCCGAGCTCTACCAGGGCCTGGGCGTGACGCTGGTGG
GCTCGATGCCTGCGGTGGGAGTGTACTTTGGCCTCTATCAGTTCGTCAAA
AAACAGATGGACAGCAAGGAGAACATGTCTCCGTATATCAGCATCACCGT
CAGCGCGGGAGTGGGCAACTTCATTGCAAGCTTCTTCCGAGTGCCGTACG
AAGTGGTGAAGCAACGCTTGCAAGTTGGACAGTACCCCACGACCATGGTG
GCGCTGCAGTCCATCTACCGAGAGCTTCTTCCGAGTGCCGTACGAAGTGG
TGAAGCAACGCTTGCAAGTTGGACAGTACCCCACGACCATGGTGGCGCTG
CAGTCCATCTACCGAGAGGGAGGCCTGCTCGGGTTCTTTGGGAAGGGGGG
GCTCAAGATGCAGTGGGCGCGAGACATCCCGTACGCGATGGTGACGCTCC
TGGTGTACGAGACCCTCCAGAAGGCGGCGGCGCGGCGGAAGGGGCCCGGG
GAGGGGCCCGGGTCCCCCGGCAAGGAGGCCAAGGCCAACCCCCTCGAGAA
CATGGTGATCGGCGCGATCGCCGGGGGCGTGGGCTCGCTGGTGACGAACC
CCATGGACATGATCAAGACGAGAATGATGACGTCCCCGGAACTGTACGCC
GGGCCAATGGACGCGGCGTGGCAGGCGCTCAGCAAGGAGGGGCCGCAGGG
AGGCCTGCTCGGGTTCTTTGGGAAGGGGGGGCTCAAGATGCAGTGGGCGC
GAGACATCCCGTACGCGATGGTGACGCTCCTGGTGTACGAGACCCTCCAG
AAGGCGGCGGCGCGGCGGAAGGGGCCCGGGGAGGGGCCCGGGTCCCCCGG
CAAGGAGGCCAAGGCCAACCCCCTCGAGAACATGGTGATCGGCGCGATCG
CCGGGGGCGTGGGCTCGCTGGTGACGAACCCCATGGACATGATCAAGACG
AGAATGATGACGTCCCCGGAACTGTACGCCGGGCCAATGGACGCGGCGTG
GCAGGCGCTCAGCAAGGAGGGGCCGCAGGCTTTCCTGAAGGGAGCCACCC
CTCGGTTACTCCACAAGATCCCAGCCAACGCCTTCTTCTTCGTGGCGTAC
GAGTTCTTCCGCAGCGTCCTCGGCGTGACTCGATGAGCTTTCCTGAAGGG
AGCCACCCCTCGGTTACTCCACAAGATCCCAGCCAACGCCTTCTTCTTCG
TGGCGTACGAGTTCTTCCGCAGCGTCCTCGGCGTGACTCGATGA
back to top