prot_L-elsbetiae_contig1670.4525.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1670.4525.1
Unique Nameprot_L-elsbetiae_contig1670.4525.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length125
Homology
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 227 bits (579), Expect = 4.260e-75
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKPIK 124
            MPTIQQL+R  RKK+QTRTKSPALKNCPQRRGVCT+VYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYH++RGTLD++GVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 224 bits (571), Expect = 7.080e-74
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKPIK 124
            MPTIQQLIR++R KI+ R KSPALKNCPQRRGVCT+V+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRGTLDTVGVKDRRQ RSKYG KKP+K
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RS12_SYNE7 (30S ribosomal protein S12 n=10 Tax=Cyanobacteria TaxID=1117 RepID=RS12_SYNE7)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 109/122 (89.34%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQLIR +R+KI  +TKSPALKNCPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQSRSKYG K+P
Sbjct:    1 MPTIQQLIRDEREKITKKTKSPALKNCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSRSKYGAKRP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQLIR+KRKKI  +TKSPALK CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQ RSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 217 bits (552), Expect = 5.590e-71
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQLIR +R+KI+ +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 215 bits (548), Expect = 2.280e-70
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQL+R +RKK   +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHI+RGTLDT GVKDRRQSRSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A1C9CCY6_9RHOD (30S ribosomal protein S12 n=7 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCY6_9RHOD)

HSP 1 Score: 215 bits (548), Expect = 2.280e-70
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQL+R +R K+  +TKSPALKNCPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDT GVKDRR+ RSKYG KKP
Sbjct:    1 MPTIQQLVRNERIKVVKKTKSPALKNCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRRGRSKYGTKKP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 214 bits (545), Expect = 6.320e-70
Identity = 104/122 (85.25%), Postives = 116/122 (95.08%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQLIR KR+ +++RTKSPAL+ CPQRRGVCT+VYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDTVGVKDR+Q RSKYG KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 214 bits (545), Expect = 6.530e-70
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQLIR +R+K + +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
[Close]
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RR12_PORPU (30S ribosomal protein S12, chloroplastic n=16 Tax=Rhodophyta TaxID=2763 RepID=RR12_PORPU)

HSP 1 Score: 214 bits (545), Expect = 6.530e-70
Identity = 102/122 (83.61%), Postives = 115/122 (94.26%), Query Frame = 0 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 122
            MPTIQQL+R +R+KI  +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPG+GHN+QEHSVVLIRGGR+KDLPGVRYH++RGTLD  GVKDRR+SRSKYG KKP
Sbjct:    1 MPTIQQLVRSERRKINKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGVGHNIQEHSVVLIRGGRIKDLPGVRYHVVRGTLDAAGVKDRRKSRSKYGTKKP 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9Z3_9STRA4.260e-7589.5230S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A6P0NH41_9CYAN7.080e-7490.3230S ribosomal protein S12 n=53 Tax=cellular organi... [more]
RS12_SYNE71.370e-7189.3430S ribosomal protein S12 n=10 Tax=Cyanobacteria T... [more]
A0A3G1IVK8_9EUKA1.370e-7188.52Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
K9TNW7_9CYAN5.590e-7187.7030S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A0P8BUW8_9CYAN2.280e-7086.0730S ribosomal protein S12 n=11 Tax=cellular organi... [more]
A0A1C9CCY6_9RHOD2.280e-7087.7030S ribosomal protein S12 n=7 Tax=Rhodophyta TaxID... [more]
RR12_ANTAG6.320e-7085.2530S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]
K9S9M0_9CYAN6.530e-7086.8930S ribosomal protein S12 n=17 Tax=cellular organi... [more]
RR12_PORPU6.530e-7083.6130S ribosomal protein S12, chloroplastic n=16 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 58..77
score: 75.97
coord: 94..110
score: 65.69
coord: 27..42
score: 70.75
coord: 77..94
score: 88.04
coord: 110..122
score: 68.91
coord: 42..57
score: 86.63
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 12..122
e-value: 1.7E-43
score: 146.8
IPR006032Ribosomal protein S12/S23PIRSFPIRSF002133RPS12p_RPS12a_RPS23e_RPS12ocoord: 1..124
e-value: 1.9E-55
score: 183.2
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 1..122
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 43..50
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 1..122
e-value: 1.1E-68
score: 226.8
IPR005679Ribosomal protein S12, bacterial-typeHAMAPMF_00403_BRibosomal_S12_Bcoord: 1..124
score: 39.708
NoneNo IPR availableGENE3D2.40.50.140coord: 1..124
e-value: 1.9E-64
score: 217.2
NoneNo IPR availablePANTHERPTHR11652:SF128S RIBOSOMAL PROTEIN S12, MITOCHONDRIALcoord: 1..122
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 2..122

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:10748..11122 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4525.1mRNA_L-elsbetiae_contig1670.4525.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1670 10748..11122 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1670.4525.1 ID=prot_L-elsbetiae_contig1670.4525.1|Name=mRNA_L-elsbetiae_contig1670.4525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRG
TLDTVGVKDRRQSRSKYGNKKPIK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006032Ribosomal_S12/S23
IPR005679Ribosomal_S12_bac
IPR012340NA-bd_OB-fold