mRNA_L-elsbetiae_contig1670.4525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1670.4525.1
Unique NamemRNA_L-elsbetiae_contig1670.4525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 227 bits (579), Expect = 4.260e-75
Identity = 111/124 (89.52%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKPIK 372
            MPTIQQL+R  RKK+QTRTKSPALKNCPQRRGVCT+VYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYH++RGTLD++GVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 224 bits (571), Expect = 7.080e-74
Identity = 112/124 (90.32%), Postives = 119/124 (95.97%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKPIK 372
            MPTIQQLIR++R KI+ R KSPALKNCPQRRGVCT+V+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRGTLDTVGVKDRRQ RSKYG KKP+K
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RS12_SYNE7 (30S ribosomal protein S12 n=10 Tax=Cyanobacteria TaxID=1117 RepID=RS12_SYNE7)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 109/122 (89.34%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQLIR +R+KI  +TKSPALKNCPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQSRSKYG K+P
Sbjct:    1 MPTIQQLIRDEREKITKKTKSPALKNCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQSRSKYGAKRP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 218 bits (556), Expect = 1.370e-71
Identity = 108/122 (88.52%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQLIR+KRKKI  +TKSPALK CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQ RSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 217 bits (552), Expect = 5.590e-71
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQLIR +R+KI+ +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 215 bits (548), Expect = 2.280e-70
Identity = 105/122 (86.07%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQL+R +RKK   +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHI+RGTLDT GVKDRRQSRSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: A0A1C9CCY6_9RHOD (30S ribosomal protein S12 n=7 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCY6_9RHOD)

HSP 1 Score: 215 bits (548), Expect = 2.280e-70
Identity = 107/122 (87.70%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQL+R +R K+  +TKSPALKNCPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDT GVKDRR+ RSKYG KKP
Sbjct:    1 MPTIQQLVRNERIKVVKKTKSPALKNCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRRGRSKYGTKKP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 214 bits (545), Expect = 6.320e-70
Identity = 104/122 (85.25%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQLIR KR+ +++RTKSPAL+ CPQRRGVCT+VYT TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDTVGVKDR+Q RSKYG KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 214 bits (545), Expect = 6.530e-70
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQLIR +R+K + +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+IRGGRVKDLPGVRYHIIRGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Match: RR12_PORPU (30S ribosomal protein S12, chloroplastic n=16 Tax=Rhodophyta TaxID=2763 RepID=RR12_PORPU)

HSP 1 Score: 214 bits (545), Expect = 6.530e-70
Identity = 102/122 (83.61%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQSRSKYGNKKP 366
            MPTIQQL+R +R+KI  +TKSPALK+CPQRRGVCT+VYT TPKKPNSA+RKVARVRLTSGFEVTAYIPG+GHN+QEHSVVLIRGGR+KDLPGVRYH++RGTLD  GVKDRR+SRSKYG KKP
Sbjct:    1 MPTIQQLVRSERRKINKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGVGHNIQEHSVVLIRGGRIKDLPGVRYHVVRGTLDAAGVKDRRKSRSKYGTKKP 122
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1670.4525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S6U9Z3_9STRA4.260e-7589.5230S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A6P0NH41_9CYAN7.080e-7490.3230S ribosomal protein S12 n=53 Tax=cellular organi... [more]
RS12_SYNE71.370e-7189.3430S ribosomal protein S12 n=10 Tax=Cyanobacteria T... [more]
A0A3G1IVK8_9EUKA1.370e-7188.52Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
K9TNW7_9CYAN5.590e-7187.7030S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A0P8BUW8_9CYAN2.280e-7086.0730S ribosomal protein S12 n=11 Tax=cellular organi... [more]
A0A1C9CCY6_9RHOD2.280e-7087.7030S ribosomal protein S12 n=7 Tax=Rhodophyta TaxID... [more]
RR12_ANTAG6.320e-7085.2530S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]
K9S9M0_9CYAN6.530e-7086.8930S ribosomal protein S12 n=17 Tax=cellular organi... [more]
RR12_PORPU6.530e-7083.6130S ribosomal protein S12, chloroplastic n=16 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1670contigL-elsbetiae_contig1670:10748..11122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score232.6
Seed ortholog evalue9.7e-59
Seed eggNOG ortholog2880.D1J727
Preferred namerps12
KEGG koko:K02950,ko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0019538,GO:0031976,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size375
Cds size375
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.5019407-CDS-L-elsbetiae_contig1670:10747..111221622815694.5019407-CDS-L-elsbetiae_contig1670:10747..11122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 10748..11122 -
1691683042.8180838-CDS-L-elsbetiae_contig1670:10747..111221691683042.8180838-CDS-L-elsbetiae_contig1670:10747..11122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1670 10748..11122 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1670.4525.1prot_L-elsbetiae_contig1670.4525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1670 10748..11122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1670.4525.1

>prot_L-elsbetiae_contig1670.4525.1 ID=prot_L-elsbetiae_contig1670.4525.1|Name=mRNA_L-elsbetiae_contig1670.4525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MPTIQQLIRIKRKKIQTRTKSPALKNCPQRRGVCTKVYTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRG
TLDTVGVKDRRQSRSKYGNKKPIK*
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mRNA from alignment at L-elsbetiae_contig1670:10748..11122-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1670.4525.1 ID=mRNA_L-elsbetiae_contig1670.4525.1|Name=mRNA_L-elsbetiae_contig1670.4525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=375bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:10748..11122- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTACTATACAACAATTAATACGAATAAAACGTAAAAAAATACAAAC
ACGAACTAAATCACCTGCATTAAAAAATTGTCCACAACGCCGAGGAGTTT
GTACAAAAGTTTATACAATTACACCAAAAAAACCGAATTCAGCTATAAGA
AAAGTTGCAAGAGTTCGATTAACATCAGGATTTGAAGTAACAGCATATAT
CCCAGGTATAGGTCATAATTTACAAGAACATTCAGTTGTTTTAATTCGTG
GTGGAAGAGTAAAAGATTTACCTGGGGTACGTTATCATATTATTCGTGGA
ACACTTGATACTGTTGGAGTAAAAGATCGTCGACAAAGTCGTTCAAAATA
TGGAAATAAAAAACCAATAAAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1670:10748..11122-

>mRNA_L-elsbetiae_contig1670.4525.1 ID=mRNA_L-elsbetiae_contig1670.4525.1|Name=mRNA_L-elsbetiae_contig1670.4525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig1670:10748..11122- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTACTATACAACAATTAATACGAATAAAACGTAAAAAAATACAAAC
ACGAACTAAATCACCTGCATTAAAAAATTGTCCACAACGCCGAGGAGTTT
GTACAAAAGTTTATACAATTACACCAAAAAAACCGAATTCAGCTATAAGA
AAAGTTGCAAGAGTTCGATTAACATCAGGATTTGAAGTAACAGCATATAT
CCCAGGTATAGGTCATAATTTACAAGAACATTCAGTTGTTTTAATTCGTG
GTGGAAGAGTAAAAGATTTACCTGGGGTACGTTATCATATTATTCGTGGA
ACACTTGATACTGTTGGAGTAAAAGATCGTCGACAAAGTCGTTCAAAATA
TGGAAATAAAAAACCAATAAAATAAATGCCTACTATACAACAATTAATAC
GAATAAAACGTAAAAAAATACAAACACGAACTAAATCACCTGCATTAAAA
AATTGTCCACAACGCCGAGGAGTTTGTACAAAAGTTTATACAATTACACC
AAAAAAACCGAATTCAGCTATAAGAAAAGTTGCAAGAGTTCGATTAACAT
CAGGATTTGAAGTAACAGCATATATCCCAGGTATAGGTCATAATTTACAA
GAACATTCAGTTGTTTTAATTCGTGGTGGAAGAGTAAAAGATTTACCTGG
GGTACGTTATCATATTATTCGTGGAACACTTGATACTGTTGGAGTAAAAG
ATCGTCGACAAAGTCGTTCAAAATATGGAAATAAAAAACCAATAAAATAA
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