mRNA_L-elsbetiae_contig167.4521.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig167.4521.1
Unique NamemRNA_L-elsbetiae_contig167.4521.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: D8LI72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI72_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 8.810e-37
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVYQ 237
            L  ++VDDHCDAL+K+H AIR GALPF+GLSA+HFDAHPDLMVTPDMPA TCF P +LY TLA  EGGIAEWILPLVYQ
Sbjct:   18 LRCYIVDDHCDALSKIHRAIRNGALPFTGLSAVHFDAHPDLMVTPDMPAETCFRPHELYDTLAQTEGGIAEWILPLVYQ 96          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: A0A7S1GEV3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEV3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.140e-22
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPF-SGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            L V VVDDH DAL  +HA IR G LPF S  + +H DAHPDL+  P  PA+  F P  LY  LA ++GGIAEW+LPLVY
Sbjct:   72 LRVAVVDDHDDALRHIHAGIRDGTLPFASTFAVVHVDAHPDLLAMPSTPASLAFAPSALYDALADSDGGIAEWMLPLVY 150          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: A0A835Z3T2_9STRA (UPF0489 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 8.640e-19
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   13 VVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVYQ 237
            VV+DH DAL   H A+R+  L   G++ +H DAHPDL VT DM A  CF P+ LY  L  + GGIAEWI+PLVY+
Sbjct:   20 VVEDHHDALPFWHLAMRRKRLAQQGITMVHIDAHPDLCVTEDMQADICFQPRALYDALDNSVGGIAEWIIPLVYE 94          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: A0A1V9Z4E5_9STRA (UPF0489 protein C5orf22-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z4E5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.690e-14
Identity = 38/78 (48.72%), Postives = 49/78 (62.82%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            L V+VVDDH       H AIR+  LPFS ++ +H DAHPDL     +PAAT F P+ LY  L  ++ GIA ++LPL Y
Sbjct:    8 LPVYVVDDH-------HHAIRRRLLPFSNVTIVHLDAHPDLAFPRSIPAATIFAPEALYDALDASDAGIASFLLPLAY 78          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: UPI001B88CF36 (UPF0489 protein C5orf22 homolog n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CF36)

HSP 1 Score: 72.4 bits (176), Expect = 5.430e-13
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            +  F+V+DH + +  +H  I    LPF GL+ +HFD+HPDL++  +MPA T F    LY TL+     I  WI+PLVY
Sbjct:   15 IQAFIVEDHNEVVPYIHTYIGSKQLPFEGLTLIHFDSHPDLLIPLNMPADTVFNKHTLYETLS-----IENWIMPLVY 87          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: UPI001601E1B2 (UPF0489 protein C5orf22 homolog n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601E1B2)

HSP 1 Score: 63.9 bits (154), Expect = 5.170e-10
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1
Query:    7 VFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            V+VV+DH DAL  ++ AI    LP  G++ +H D+HPD+++   MPA T F  ++L+ TL+     I  WILP  Y
Sbjct:   16 VWVVEDHNDALYYIYRAIGSHHLPLHGVTMVHLDSHPDMLIPWKMPADTVFNREELFNTLS-----IENWILPAAY 86          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: UPI001EAFD9A3 (UPF0489 protein C5orf22 homolog isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFD9A3)

HSP 1 Score: 63.5 bits (153), Expect = 7.100e-10
Identity = 32/78 (41.03%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            + V +V+DH + +  +H  I    LPFS L+ +HFD+HPD+++  DM A T F    LY  L+     I  WILPLV+
Sbjct:   10 IPVLIVEDHHEVVPHIHRNIGSKHLPFSDLTLVHFDSHPDMLIPVDMQADTVFDKTALYDALS-----IENWILPLVH 82          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: A0A6P4YJT9_BRABE (UPF0489 protein C5orf22 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4YJT9_BRABE)

HSP 1 Score: 63.2 bits (152), Expect = 9.670e-10
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1
Query:    7 VFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            V+VV+DH DAL  ++ AI    LP  G++ +H D+HPD+++   MPA T F  Q+L+  L+     I  WILP  Y
Sbjct:   16 VWVVEDHNDALYYIYRAIGSHHLPLHGVTMVHLDSHPDMLIPWKMPADTVFDRQELFNALS-----IENWILPAAY 86          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: UPI001EE55A23 (LOW QUALITY PROTEIN: UPF0489 protein C5orf22 homolog n=2 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE55A23)

HSP 1 Score: 62.0 bits (149), Expect = 2.480e-9
Identity = 30/78 (38.46%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            + V +V++H + +  +H  I    LPFS L+ +HFD+HPD+++  DM A T F  + LY  L+     I  WILPL +
Sbjct:   10 IPVLIVENHHEVVPLIHRDIGSKHLPFSDLTLIHFDSHPDMLIPVDMQADTVFVKEALYDALS-----IENWILPLAH 82          
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Match: UPI001404140E (UPF0489 protein C5orf22 homolog isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001404140E)

HSP 1 Score: 61.6 bits (148), Expect = 3.460e-9
Identity = 31/78 (39.74%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAATCFCPQDLYYTLATAEGGIAEWILPLVY 234
            L V+VV++H D L  ++ A+    LP  GL+ LH DAHPDL++   +PA T   P  L+     +E  I  W+LP V+
Sbjct:   12 LPVWVVEEHNDVLPHIYRAMGSRHLPMEGLTLLHVDAHPDLLLPVSLPARTVHDPHTLF-----SELSIENWVLPAVF 84          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig167.4521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI72_ECTSI8.810e-3778.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1GEV3_9STRA9.140e-2258.23Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835Z3T2_9STRA8.640e-1954.67UPF0489 domain-containing protein n=1 Tax=Tribonem... [more]
A0A1V9Z4E5_9STRA4.690e-1448.72UPF0489 protein C5orf22-like n=1 Tax=Achlya hypogy... [more]
UPI001B88CF365.430e-1343.59UPF0489 protein C5orf22 homolog n=1 Tax=Gigantopel... [more]
UPI001601E1B25.170e-1042.11UPF0489 protein C5orf22 homolog n=1 Tax=Branchiost... [more]
UPI001EAFD9A37.100e-1041.03UPF0489 protein C5orf22 homolog isoform X1 n=2 Tax... [more]
A0A6P4YJT9_BRABE9.670e-1042.11UPF0489 protein C5orf22 homolog n=1 Tax=Branchiost... [more]
UPI001EE55A232.480e-938.46LOW QUALITY PROTEIN: UPF0489 protein C5orf22 homol... [more]
UPI001404140E3.460e-939.74UPF0489 protein C5orf22 homolog isoform X1 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig167contigL-elsbetiae_contig167:52290..52541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.4
Seed ortholog evalue7.5e-31
Seed eggNOG ortholog2880.D8LI72
Preferred nameC5orf22
Hectar predicted targeting categoryother localisation
GOsGO:0008150,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0023051,GO:0023057,GO:0046578,GO:0046580,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051056,GO:0051058,GO:0065007,GO:1902531,GO:1902532
EggNOG free text desc.UPF0489 domain
EggNOG OGs28PEW@1,2QW2U@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815694.3096757-CDS-L-elsbetiae_contig167:52289..525411622815694.3096757-CDS-L-elsbetiae_contig167:52289..52541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 52290..52541 +
1691683042.7579556-CDS-L-elsbetiae_contig167:52289..525411691683042.7579556-CDS-L-elsbetiae_contig167:52289..52541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig167 52290..52541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig167.4521.1prot_L-elsbetiae_contig167.4521.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig167 52290..52541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig167.4521.1

>prot_L-elsbetiae_contig167.4521.1 ID=prot_L-elsbetiae_contig167.4521.1|Name=mRNA_L-elsbetiae_contig167.4521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
LSVFVVDDHCDALNKVHAAIRQGALPFSGLSALHFDAHPDLMVTPDMPAA
TCFCPQDLYYTLATAEGGIAEWILPLVYQVGNR*
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mRNA from alignment at L-elsbetiae_contig167:52290..52541+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig167.4521.1 ID=mRNA_L-elsbetiae_contig167.4521.1|Name=mRNA_L-elsbetiae_contig167.4521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=252bp|location=Sequence derived from alignment at L-elsbetiae_contig167:52290..52541+ (Laminarionema elsbetiae ELsaHSoW15)
TTGAGTGTTTTCGTCGTAGACGATCACTGCGATGCGTTGAATAAAGTACA CGCAGCGATCCGACAAGGAGCGCTGCCATTCTCCGGTCTCTCCGCCCTTC ATTTTGATGCTCACCCCGATCTCATGGTCACACCGGACATGCCTGCGGCG ACGTGCTTTTGCCCGCAGGATCTCTATTATACACTGGCAACCGCTGAGGG AGGTATTGCAGAATGGATCCTTCCCCTGGTCTATCAGGTGGGCAATAGAT AG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig167:52290..52541+

>mRNA_L-elsbetiae_contig167.4521.1 ID=mRNA_L-elsbetiae_contig167.4521.1|Name=mRNA_L-elsbetiae_contig167.4521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig167:52290..52541+ (Laminarionema elsbetiae ELsaHSoW15)
TTGAGTGTTTTCGTCGTAGACGATCACTGCGATGCGTTGAATAAAGTACA
CGCAGCGATCCGACAAGGAGCGCTGCCATTCTCCGGTCTCTCCGCCCTTC
ATTTTGATGCTCACCCCGATCTCATGGTCACACCGGACATGCCTGCGGCG
ACGTGCTTTTGCCCGCAGGATCTCTATTATACACTGGCAACCGCTGAGGG
AGGTATTGCAGAATGGATCCTTCCCCTGGTCTATCAGGTGGGCAATAGAT
AGTTGAGTGTTTTCGTCGTAGACGATCACTGCGATGCGTTGAATAAAGTA
CACGCAGCGATCCGACAAGGAGCGCTGCCATTCTCCGGTCTCTCCGCCCT
TCATTTTGATGCTCACCCCGATCTCATGGTCACACCGGACATGCCTGCGG
CGACGTGCTTTTGCCCGCAGGATCTCTATTATACACTGGCAACCGCTGAG
GGAGGTATTGCAGAATGGATCCTTCCCCTGGTCTATCAGGTGGGCAATAG
ATAG
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