prot_L-elsbetiae_contig16544.4435.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig16544.4435.1
Unique Nameprot_L-elsbetiae_contig16544.4435.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length75
Homology
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.460e-37
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 0
Query:    2 RYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            RYYNVADSLSPDVWLAP KVWEVKCADLSKSPVHKAAIGK+A+EPDRGISIRFPRLLR+R DK PEQATTSDQ+
Sbjct:  941 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAAIGKIAQEPDRGISIRFPRLLREREDKDPEQATTSDQI 1014          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.350e-25
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            Y+NV D++ PDVWL P KVWEV+ ADLSKSPVHKAA+GK+  +P RGISIRFPRL+R+R DK PE AT++DQ+
Sbjct:  548 YFNVGDTIEPDVWLEPCKVWEVRAADLSKSPVHKAAVGKV--DPVRGISIRFPRLVRERDDKAPESATSADQI 618          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A2P2K9T2_RHIMU (DNA ligase 1-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9T2_RHIMU)

HSP 1 Score: 101 bits (251), Expect = 3.430e-24
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            YY   D+++PDVW  P +VWEVK ADL+ SPVH+AAIG++  +PD+GIS+RFPRLL+ RT+K PE ATTSDQV
Sbjct:  219 YYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAAIGEV--DPDKGISLRFPRLLKVRTEKSPEDATTSDQV 289          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: D7KE22_ARALL (DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7KE22_ARALL)

HSP 1 Score: 102 bits (253), Expect = 1.450e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 0
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            ++YY V D L+PDVWL P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRL+R R DK PE+AT+SDQ+
Sbjct:  529 KQYYQVDDGLNPDVWLEPTEVWEVKAADLTISPVHRAAIGIV--DPDKGISLRFPRLVRVRKDKNPEEATSSDQI 601          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A2P2K9V6_RHIMU (DNA ligase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9V6_RHIMU)

HSP 1 Score: 101 bits (251), Expect = 2.790e-23
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            YY   D+++PDVW  P +VWEVK ADL+ SPVH+AAIG++  +PD+GIS+RFPRLL+ RT+K PE ATTSDQV
Sbjct:  701 YYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAAIGEV--DPDKGISLRFPRLLKVRTEKSPEDATTSDQV 771          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: V4SB42_CITCL (DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_CITCL)

HSP 1 Score: 100 bits (250), Expect = 3.800e-23
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 0
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            R YY  AD+LSPDVW  P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRL+R R DK PEQA++S+QV
Sbjct:  661 RPYYRFADTLSPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLIRVREDKTPEQASSSEQV 733          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A835PX35_VANPL (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PX35_VANPL)

HSP 1 Score: 99.8 bits (247), Expect = 5.040e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            YY V+DS++PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRL+R R DK PEQAT SDQV
Sbjct:  334 YYRVSDSMNPDVWFEPAEVWEVKAADLSISPVHRAASGVV--DPNKGISLRFPRLVRVRDDKNPEQATNSDQV 404          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A452YKZ3_AEGTS (DNA_ligase_A_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YKZ3_AEGTS)

HSP 1 Score: 94.4 bits (233), Expect = 5.440e-23
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 0
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            + YY  AD+  PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRLLR R DK PE ATT++QV
Sbjct:   56 KAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGIV--DPNKGISLRFPRLLRVRDDKNPEHATTAEQV 128          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A8N4IJ47_ELAGV (DNA ligase 1-like n=2 Tax=Cocoseae TaxID=169705 RepID=A0A8N4IJ47_ELAGV)

HSP 1 Score: 100 bits (248), Expect = 7.090e-23
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            YY  AD+++PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRLLR R DK PEQATTSDQV
Sbjct:  661 YYQYADTVNPDVWFEPAEVWEVKAADLSISPVHRAASGIV--DPNKGISLRFPRLLRVRDDKSPEQATTSDQV 731          
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A1Q3C007_CEPFO (DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C007_CEPFO)

HSP 1 Score: 100 bits (248), Expect = 7.090e-23
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 0
Query:    3 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 75
            YY  AD+++PDVW  P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRLLR R DK PEQA++SDQV
Sbjct:  661 YYRYADTINPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLLRVREDKTPEQASSSDQV 731          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI3.460e-3790.54DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA1.350e-2568.49DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A2P2K9T2_RHIMU3.430e-2464.38DNA ligase 1-like n=1 Tax=Rhizophora mucronata Tax... [more]
D7KE22_ARALL1.450e-2364.00DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrat... [more]
A0A2P2K9V6_RHIMU2.790e-2364.38DNA ligase n=1 Tax=Rhizophora mucronata TaxID=6114... [more]
V4SB42_CITCL3.800e-2365.33DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_... [more]
A0A835PX35_VANPL5.040e-2365.75DNA_LIGASE_A3 domain-containing protein n=1 Tax=Va... [more]
A0A452YKZ3_AEGTS5.440e-2361.33DNA_ligase_A_C domain-containing protein n=1 Tax=A... [more]
A0A8N4IJ47_ELAGV7.090e-2367.12DNA ligase 1-like n=2 Tax=Cocoseae TaxID=169705 Re... [more]
A0A1Q3C007_CEPFO7.090e-2365.75DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 1..75
e-value: 4.3E-24
score: 87.4
NoneNo IPR availablePANTHERPTHR45674:SF4DNA LIGASE 1coord: 1..75
NoneNo IPR availablePANTHERPTHR45674FAMILY NOT NAMEDcoord: 1..75
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 8..64
e-value: 3.9E-10
score: 40.2
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 3..74

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16544contigL-elsbetiae_contig16544:3053..3541 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16544.4435.1mRNA_L-elsbetiae_contig16544.4435.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig16544 3053..3541 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig16544.4435.1 ID=prot_L-elsbetiae_contig16544.4435.1|Name=mRNA_L-elsbetiae_contig16544.4435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGI
SIRFPRLLRDRTDKGPEQATTSDQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012309DNA_ligase_ATP-dep_C
IPR012340NA-bd_OB-fold