mRNA_L-elsbetiae_contig16544.4435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16544.4435.1
Unique NamemRNA_L-elsbetiae_contig16544.4435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: D8LFE0_ECTSI (DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFE0_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 3.460e-37
Identity = 67/74 (90.54%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    4 RYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            RYYNVADSLSPDVWLAP KVWEVKCADLSKSPVHKAAIGK+A+EPDRGISIRFPRLLR+R DK PEQATTSDQ+
Sbjct:  941 RYYNVADSLSPDVWLAPHKVWEVKCADLSKSPVHKAAIGKIAQEPDRGISIRFPRLLREREDKDPEQATTSDQI 1014
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A836CMS0_9STRA (DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.350e-25
Identity = 50/73 (68.49%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            Y+NV D++ PDVWL P KVWEV+ ADLSKSPVHKAA+GK+  +P RGISIRFPRL+R+R DK PE AT++DQ+
Sbjct:  548 YFNVGDTIEPDVWLEPCKVWEVRAADLSKSPVHKAAVGKV--DPVRGISIRFPRLVRERDDKAPESATSADQI 618
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A2P2K9T2_RHIMU (DNA ligase 1-like n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9T2_RHIMU)

HSP 1 Score: 101 bits (251), Expect = 3.430e-24
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            YY   D+++PDVW  P +VWEVK ADL+ SPVH+AAIG++  +PD+GIS+RFPRLL+ RT+K PE ATTSDQV
Sbjct:  219 YYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAAIGEV--DPDKGISLRFPRLLKVRTEKSPEDATTSDQV 289
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: D7KE22_ARALL (DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=D7KE22_ARALL)

HSP 1 Score: 102 bits (253), Expect = 1.450e-23
Identity = 48/75 (64.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            ++YY V D L+PDVWL P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRL+R R DK PE+AT+SDQ+
Sbjct:  529 KQYYQVDDGLNPDVWLEPTEVWEVKAADLTISPVHRAAIGIV--DPDKGISLRFPRLVRVRKDKNPEEATSSDQI 601
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A2P2K9V6_RHIMU (DNA ligase n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2K9V6_RHIMU)

HSP 1 Score: 101 bits (251), Expect = 2.790e-23
Identity = 47/73 (64.38%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            YY   D+++PDVW  P +VWEVK ADL+ SPVH+AAIG++  +PD+GIS+RFPRLL+ RT+K PE ATTSDQV
Sbjct:  701 YYRYGDTINPDVWFEPSEVWEVKAADLTISPVHRAAIGEV--DPDKGISLRFPRLLKVRTEKSPEDATTSDQV 771
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: V4SB42_CITCL (DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_CITCL)

HSP 1 Score: 100 bits (250), Expect = 3.800e-23
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1 
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            R YY  AD+LSPDVW  P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRL+R R DK PEQA++S+QV
Sbjct:  661 RPYYRFADTLSPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLIRVREDKTPEQASSSEQV 733
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A835PX35_VANPL (DNA_LIGASE_A3 domain-containing protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PX35_VANPL)

HSP 1 Score: 99.8 bits (247), Expect = 5.040e-23
Identity = 48/73 (65.75%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            YY V+DS++PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRL+R R DK PEQAT SDQV
Sbjct:  334 YYRVSDSMNPDVWFEPAEVWEVKAADLSISPVHRAASGVV--DPNKGISLRFPRLVRVRDDKNPEQATNSDQV 404
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A452YKZ3_AEGTS (DNA_ligase_A_C domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452YKZ3_AEGTS)

HSP 1 Score: 94.4 bits (233), Expect = 5.440e-23
Identity = 46/75 (61.33%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            + YY  AD+  PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRLLR R DK PE ATT++QV
Sbjct:   56 KAYYRFADTTDPDVWFEPSEVWEVKAADLSISPVHRAANGIV--DPNKGISLRFPRLLRVRDDKNPEHATTAEQV 128
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A8N4IJ47_ELAGV (DNA ligase 1-like n=2 Tax=Cocoseae TaxID=169705 RepID=A0A8N4IJ47_ELAGV)

HSP 1 Score: 100 bits (248), Expect = 7.090e-23
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            YY  AD+++PDVW  P +VWEVK ADLS SPVH+AA G +  +P++GIS+RFPRLLR R DK PEQATTSDQV
Sbjct:  661 YYQYADTVNPDVWFEPAEVWEVKAADLSISPVHRAASGIV--DPNKGISLRFPRLLRVRDDKSPEQATTSDQV 731
[Close]
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Match: A0A1Q3C007_CEPFO (DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3C007_CEPFO)

HSP 1 Score: 100 bits (248), Expect = 7.090e-23
Identity = 48/73 (65.75%), Postives = 60/73 (82.19%), Query Frame = 1 
Query:    7 YYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGISIRFPRLLRDRTDKGPEQATTSDQV 225
            YY  AD+++PDVW  P +VWEVK ADL+ SPVH+AAIG +  +PD+GIS+RFPRLLR R DK PEQA++SDQV
Sbjct:  661 YYRYADTINPDVWFEPTEVWEVKAADLTISPVHRAAIGVV--DPDKGISLRFPRLLRVREDKTPEQASSSDQV 731
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16544.4435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFE0_ECTSI3.460e-3790.54DNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8L... [more]
A0A836CMS0_9STRA1.350e-2568.49DNA ligase (ATP) n=1 Tax=Tribonema minus TaxID=303... [more]
A0A2P2K9T2_RHIMU3.430e-2464.38DNA ligase 1-like n=1 Tax=Rhizophora mucronata Tax... [more]
D7KE22_ARALL1.450e-2364.00DNA ligase n=2 Tax=Arabidopsis lyrata subsp. lyrat... [more]
A0A2P2K9V6_RHIMU2.790e-2364.38DNA ligase n=1 Tax=Rhizophora mucronata TaxID=6114... [more]
V4SB42_CITCL3.800e-2365.33DNA ligase n=6 Tax=Citrus TaxID=2706 RepID=V4SB42_... [more]
A0A835PX35_VANPL5.040e-2365.75DNA_LIGASE_A3 domain-containing protein n=1 Tax=Va... [more]
A0A452YKZ3_AEGTS5.440e-2361.33DNA_ligase_A_C domain-containing protein n=1 Tax=A... [more]
A0A8N4IJ47_ELAGV7.090e-2367.12DNA ligase 1-like n=2 Tax=Cocoseae TaxID=169705 Re... [more]
A0A1Q3C007_CEPFO7.090e-2365.75DNA ligase n=1 Tax=Cephalotus follicularis TaxID=3... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16544contigL-elsbetiae_contig16544:3053..3541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score145.2
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LFE0
Preferred nameLIG1
KEGG rclassRC00005
KEGG koko:K10747
KEGG ReactionR00381,R00382,R10822,R10823
KEGG Pathwayko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430
Hectar predicted targeting categoryother localisation
GOsGO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461
EggNOG free text desc.DNA ligase (ATP) activity
EggNOG OGsCOG1793@1,KOG0967@2759
EC6.5.1.1,6.5.1.6,6.5.1.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.0397458-CDS-L-elsbetiae_contig16544:3052..32171622815686.0397458-CDS-L-elsbetiae_contig16544:3052..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16544 3053..3217 -
1691683037.3129523-CDS-L-elsbetiae_contig16544:3052..32171691683037.3129523-CDS-L-elsbetiae_contig16544:3052..3217Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16544 3053..3217 -
1622815686.0514438-CDS-L-elsbetiae_contig16544:3481..35411622815686.0514438-CDS-L-elsbetiae_contig16544:3481..3541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16544 3482..3541 -
1691683037.329899-CDS-L-elsbetiae_contig16544:3481..35411691683037.329899-CDS-L-elsbetiae_contig16544:3481..3541Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16544 3482..3541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16544.4435.1prot_L-elsbetiae_contig16544.4435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16544 3053..3541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16544.4435.1

>prot_L-elsbetiae_contig16544.4435.1 ID=prot_L-elsbetiae_contig16544.4435.1|Name=mRNA_L-elsbetiae_contig16544.4435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
RRYYNVADSLSPDVWLAPRKVWEVKCADLSKSPVHKAAIGKMAKEPDRGI
SIRFPRLLRDRTDKGPEQATTSDQV
back to top

mRNA from alignment at L-elsbetiae_contig16544:3053..3541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16544.4435.1 ID=mRNA_L-elsbetiae_contig16544.4435.1|Name=mRNA_L-elsbetiae_contig16544.4435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=489bp|location=Sequence derived from alignment at L-elsbetiae_contig16544:3053..3541- (Laminarionema elsbetiae ELsaHSoW15)
CGCAGGTACTACAACGTTGCAGACAGCTTGTCGCCGGACGTGTGGCTCGC
CCCCCGGAAGGTTAGTGCTGCCTGCCTGCTCGGTTGGCCGTTATGGAAGG
TCCCGTCGGTCATCGTACTCACCCGGTCATCCCGAAGCAACTCCCACAAT
GGTTGTTCGCGTGTGTGTGTCTGTGCGTGTCAGCTGGTGTGTGTGTGTGT
ATCAGCTGGTGTGTGTGTGTGCGTGCGTGCGTGCGTGTGTCTGTGTGTGT
GACCACGGCGGCGGCGCTTTGGGCTAAAAACGCACGGCTCGACAACAAAC
ATAATGTATATACACACGCAACAGGTGTGGGAGGTGAAGTGCGCGGACCT
CTCCAAGTCTCCCGTGCACAAGGCGGCCATCGGGAAGATGGCCAAGGAGC
CCGACCGCGGGATCAGCATCCGCTTCCCTCGGCTCCTCCGGGACAGGACG
GACAAAGGACCGGAGCAGGCTACCACCTCGGACCAGGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16544:3053..3541-

>mRNA_L-elsbetiae_contig16544.4435.1 ID=mRNA_L-elsbetiae_contig16544.4435.1|Name=mRNA_L-elsbetiae_contig16544.4435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig16544:3053..3541- (Laminarionema elsbetiae ELsaHSoW15)
CGCAGGTACTACAACGTTGCAGACAGCTTGTCGCCGGACGTGTGGCTCGC
CCCCCGGAAGCGCAGGTACTACAACGTTGCAGACAGCTTGTCGCCGGACG
TGTGGCTCGCCCCCCGGAAGGTGTGGGAGGTGAAGTGCGCGGACCTCTCC
AAGTCTCCCGTGCACAAGGCGGCCATCGGGAAGATGGCCAAGGAGCCCGA
CCGCGGGATCAGCATCCGCTTCCCTCGGCTCCTCCGGGACAGGACGGACA
AAGGACCGGAGCAGGCTACCACCTCGGACCAGGTAGTGTGGGAGGTGAAG
TGCGCGGACCTCTCCAAGTCTCCCGTGCACAAGGCGGCCATCGGGAAGAT
GGCCAAGGAGCCCGACCGCGGGATCAGCATCCGCTTCCCTCGGCTCCTCC
GGGACAGGACGGACAAAGGACCGGAGCAGGCTACCACCTCGGACCAGGTA
back to top