mRNA_L-elsbetiae_contig16102.4197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16102.4197.1
Unique NamemRNA_L-elsbetiae_contig16102.4197.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LME6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME6_ECTSI)

HSP 1 Score: 428 bits (1100), Expect = 8.170e-144
Identity = 241/420 (57.38%), Postives = 295/420 (70.24%), Query Frame = 1
Query:    1 MAADQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGA-KGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVAR-PGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRWSTASSSVATRADGDAPAAAAVSLVVHIFRPTSRLFFTTRFER 1254
            M AD+RLL+EV+ G+L+GV+E+LAAGA+V+GS  LS RPL+CAARWG   IA+RL+E GA+ E   + +   G   P YPVGS ALHAAVS G EVGMIRVL++ GA+PD +D+DGCT LANACS+L  DER A+ R                    HFAAS GDC LLELLL+ AP  +N VN D GTPMAFAA TGQD+AVSFL+SAGASDEA+L+HER SLF+A+ RGF +VVRVLL + + L+A GG  EI HAMC A+QQGQ E+LRLL+ V G+ R   W+N+LV+VPGRLS  QVEVPALQCA  Y C+ ST++LL +GA+ERF+      D    VGLLLD ED+D +KA EI R L R PA+RA SWRW  A+++    A  D    AA  L   IF P  R FFT RFE+
Sbjct:    1 MDADKRLLQEVQNGNLKGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKGANLELAVTDETGFGGISPLYPVGSNALHAAVSFGVEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKAVSFLVSAGASDEAVLSHERGSLFMALCRGFTNVVRVLLSSPEALKAAGGYDEIRHAMCWAMQQGQPESLRLLISVGGKTR--YWSNQLVLVPGRLSDNQVEVPALQCAVCYQCVESTKLLLEAGADERFLTNHKPADLLGAVGLLLDAEDRDLQKAAEIVRVLRRAPAFRARSWRWPGATATPPVDAGSDPGDDAATPLGAQIFWPAGRNFFTKRFEK 418          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.020e-50
Identity = 166/409 (40.59%), Postives = 220/409 (53.79%), Query Frame = 1
Query:   16 RLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSL--LFHDERRAV-ARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAH-ERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAV--QQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRWS----------TASSSVATRADGDAPAAAAVS 1194
            +LL  + + +  GVE +LAAGASVDGS  L +RP++ AA  G V +A  L++  A+ +  +  D R          G RALH A++H   V + R+L+++GADPD  +  G TPL   C L      E+RAV AR XXXXXXXXXXXXXXX     FAA+     L+++LL  AP +LN    D  TP+  AA +G+ +AVS LLSAGA      A  +   L  AV     +VVRVLL  +G+ A+ G   IP A+  A   ++G+A  +R+LL  EG  R   WA            +  E P L CA  +G +++TRVLLA+GA+E      G     VVG       +DP K G I R L RGPAYRA SW W           T +++  T A G   AAAA S
Sbjct:  121 QLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINH-YHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWAR----------CRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWPATARAYTAGHTCAAAATTAAPGACGAAAASS 518          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.270e-50
Identity = 158/377 (41.91%), Postives = 210/377 (55.70%), Query Frame = 1
Query:   16 RLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSL--LFHDERRAV-ARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAH-ERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAV--QQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRW 1128
            +LL  + + +  GVE +LAAGASVDGS  L +RP++ AA    V +A+ L++  AD +  +  D R          G RALH A++H   V + R+L+++GADPD  +  G TPL   C L      E+RAV AR XXXXXXXXXXXXXXX     FAA+     L+++LL  AP +LN    D  TP+  AA +G+ +AVS LLSAGA      A  +   L  AV     +VVRVLL  +G++A+GG   IP A+  A   ++G+A  +R+LL  EG  R   WA            +  E P L  A  +G +++TRVLLA+GA+E      G     VVG       +DP K G I R LERGPAYRA SW W
Sbjct:  113 QLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINH-YNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWAR----------CRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAW 478          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5L2Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q3_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.960e-30
Identity = 132/413 (31.96%), Postives = 191/413 (46.25%), Query Frame = 1
Query:   10 DQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERR-AVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADH-----GTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEI-PHAMCCAVQQGQAEALRLLLGV-EGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGE---IRRTLERGPAYRA*SWRWSTASSSVATRADGDAPAAAAVSLVVHIFR 1215
            + RLL+  ++G L  V+ ++AAGA   GS +   RPLM A+  G V +   L++ GA+      ++ +T   D    +G RA H AV+ G ++  + VL+++GA  D  +  G T L NAC          A+A+                    H AA+ G+  +++LLL A   SL+     H      TP+  A  + Q +AV+ LLS GA          + L  AV +    +VRVL  A GL ++GG + + P ++  A + G+   L+LLL V  G+R    WAN  V             P L  AA Y  +    VLLA+GA+ER         G ++G LL    K      +   IRRTL RGPAYRA SW W   ++         +     V L VHIFR
Sbjct:    7 ENRLLRGAQKGDLPAVQAAIAAGADPSGSSNSRLRPLMVASGSGSVEVVNFLLQNGAE------MEHQTWGDDDHRFLGMRATHWAVTSG-KLDTLLVLLKAGAVYDAVNAQGETCLMNACMTDASPPTCVAMAKALLDAGADPLIEDREGQVALHHAAAQGNPNMIDLLLQAKGSSLSKKLLSHVSRWEHTPLQSALESNQVQAVAHLLSLGARATVDREGRGNLLRRAVVKNSEPIVRVLFEA-GLESVGGAARVMPDSLASAAKAGRTRLLKLLLTVGRGDRTTGYWANYYVWGG----------PLLNVAAGYATVDCVGVLLAAGADERVPDDERQTAGDMIGDLLASGSKSASFRSDKAAIRRTLLRGPAYRARSWTWPPLAAGADDAVAFPSGHPEKVPLGVHIFR 401          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.540e-22
Identity = 76/193 (39.38%), Postives = 96/193 (49.74%), Query Frame = 1
Query:  295 IRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERS-SLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEGERRRKAWANRLV 870
            ++ ++ +GADP+  D  GC  L  AC     + R  + R                    H AA  G   L   LLAAAP +LN VN    TP+  A   G+ +AV+ LLS GASD  +    RS SL  AV  G   ++ +LLG KGL A+GG   IP AM CAV + +   L LLL VEGE RR  WA   V
Sbjct:   32 LQCVLRAGADPNTPDGVGCNALQVACFDGDDERRLCIVRELLKWGANPNLRGGPYGSALHTAAKEGHTNLFTTLLAAAPATLNLVNEQGLTPLGTATSFGRHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLG-KGLEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGEERRTFWARTRV 223          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 3.230e-20
Identity = 103/351 (29.34%), Postives = 153/351 (43.59%), Query Frame = 1
Query:  151 IAQRLVEAGADPEA---TASLDARTGLADP-FYPV-GSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDE------RRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPH-AMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLL---------LDPED----KDPKKAGEIRRTLERGPAYRA*SWRW 1128
            IAQ L+E GA   A     S+  R  + +  F P+ G  A HAA+    ++ ++ +L+ +GADP   +  G TPL      L  +E        A+                      H A   G+   +  +LA +P +L  +  D  + +  A + G    VS LLS GA        +   L +A+ +G  D+V++LL    L A+GG       A+ CA+ Q + + LR++L + GE     WA+    + G L         L  +  Y   AS   LLA+GANE    + G     V+G +         L P      +DP K  EIRRT+ER PA+RA SW W
Sbjct:   10 IAQLLIERGAHVNAGVTNPSMGTRERVVNSTFLPMQGENAFHAAICFAKKMDLVDLLLRAGADPSAGNKLGITPLM----CLAREEPPGPWLECALEVLIKAGVNPDQVDAEGWTAFLH-AVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLSVVSCLLSLGAKHPRTTIRDHCPLAVAIIKGHEDIVKILLA--NLSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWADSDWGLAGSL---------LHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAW 344          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JUZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-11
Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 1
Query:  502 LLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEG 834
            L   LLAAAP  LN V+    TP+  A   GQ +AV+ LLS GASD  +    RS        G   ++ +LL  KG  A+GG   IP AM CAV + +   L LLL VEG
Sbjct:   51 LFTTLLAAAPARLNLVDEQGLTPLETATSFGQHKAVTCLLSPGASDRQVFQETRSGSLQEAVAGHDTLLPLLLFGKGFEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEG 161          
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JQQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ9_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.510e-8
Identity = 73/294 (24.83%), Postives = 110/294 (37.41%), Query Frame = 1
Query:  289 GMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPH-AMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLL---------LDPED----KDPKKAGEIRRTLERGPAYRA*SWRW 1128
            G + VL+++G +PD  D +G T   +A  +                                     G+   +  +LA +P +L  +  D    +  A + G   AVS+ LS G       + +   L +A+ +G  D+   LL    L A+GG       A   A+ Q + + LR++L + GE             PG                          LLA+GANE    + G     V+G +         L P      +DP K  EIRRT+ER PA+RA SW W
Sbjct:   66 GALEVLIKAGVNPDQVDAEGWTTFLHAVEV-------------------------------------GNPEKIRRILALSPAALGRIAWDGMLALHVACNEGHLSAVSWPLSLGTKHPKTTSRDHCPLAVAIIKGHEDIANTLLA--NLSAVGGVELAAEMAPTYAITQSRGKILRMMLNITGEEN----------APGG-----------------------NALLAAGANENATGQGGQRPIDVIGTIDLQNPPLSRLHPRTPTRFRDPVKEAEIRRTVERAPAFRAWSWAW 287          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LME6_ECTSI8.170e-14457.38Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
A0A6H5JSC7_9PHAE1.020e-5040.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSK8_ECTSI1.270e-5041.91Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5L2Q3_9PHAE7.960e-3031.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LME7_ECTSI1.540e-2239.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLL0_ECTSI3.230e-2029.34Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JUZ9_9PHAE1.300e-1143.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQQ9_9PHAE1.510e-824.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16102contigL-elsbetiae_contig16102:490..3557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score401.4
Seed ortholog evalue4.7e-109
Seed eggNOG ortholog2880.D8LME6
KEGG koko:K10380
KEGG Pathwayko04624,ko05205,map04624,map05205
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-05_002480.1
Exons4
Model size1487
Cds size1116
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16102.4197.1prot_L-elsbetiae_contig16102.4197.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16102 1460..3557 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.2327662-UTR-L-elsbetiae_contig16102:489..7191622815665.2327662-UTR-L-elsbetiae_contig16102:489..719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16102 490..719 -
1691683024.3092542-UTR-L-elsbetiae_contig16102:489..7191691683024.3092542-UTR-L-elsbetiae_contig16102:489..719Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16102 490..719 -
1622815665.2498696-UTR-L-elsbetiae_contig16102:1318..14591622815665.2498696-UTR-L-elsbetiae_contig16102:1318..1459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16102 1319..1459 -
1691683024.3212183-UTR-L-elsbetiae_contig16102:1318..14591691683024.3212183-UTR-L-elsbetiae_contig16102:1318..1459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16102 1319..1459 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.2654853-CDS-L-elsbetiae_contig16102:1459..16751622815665.2654853-CDS-L-elsbetiae_contig16102:1459..1675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 1460..1675 -
1691683024.3303528-CDS-L-elsbetiae_contig16102:1459..16751691683024.3303528-CDS-L-elsbetiae_contig16102:1459..1675Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 1460..1675 -
1622815665.2820625-CDS-L-elsbetiae_contig16102:2036..22471622815665.2820625-CDS-L-elsbetiae_contig16102:2036..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 2037..2247 -
1691683024.3432279-CDS-L-elsbetiae_contig16102:2036..22471691683024.3432279-CDS-L-elsbetiae_contig16102:2036..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 2037..2247 -
1622815665.2948015-CDS-L-elsbetiae_contig16102:2868..35571622815665.2948015-CDS-L-elsbetiae_contig16102:2868..3557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 2869..3557 -
1691683024.3528078-CDS-L-elsbetiae_contig16102:2868..35571691683024.3528078-CDS-L-elsbetiae_contig16102:2868..3557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16102 2869..3557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16102.4197.1

>prot_L-elsbetiae_contig16102.4197.1 ID=prot_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=372bp
MAADQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVS
IAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIR
VLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARELLRRGADPCAKT
FKGTTPLHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQD
RAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGG
TSEIPHAMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQ
VEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPED
KDPKKAGEIRRTLERGPAYRA*
back to top

mRNA from alignment at L-elsbetiae_contig16102:490..3557-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16102.4197.1 ID=mRNA_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3068bp|location=Sequence derived from alignment at L-elsbetiae_contig16102:490..3557- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCCGACCAGCGGCTGCTGAAGGAGGTGGAGAGGGGTAGCCTGCA AGGCGTGGAGGAGTCGCTCGCGGCCGGGGCCAGCGTGGACGGGTCTCGAA GCCTGAGCTACCGGCCGCTGATGTGCGCGGCGAGGTGGGGATTCGTCAGC ATAGCCCAGCGCCTGGTCGAGGCGGGAGCCGACCCGGAAGCCACCGCCTC CCTCGACGCGCGCACCGGCCTGGCGGACCCCTTCTACCCGGTCGGGTCGC GGGCGCTCCACGCCGCGGTGTCGCACGGCGCGGAGGTCGGCATGATACGG GTGCTGGTCGAGAGCGGGGCGGACCCTGACTGCCGCGACGTCGACGGCTG CACCCCCCTGGCGAACGCGTGCTCGCTGCTCTTCCATGACGAGCGCCGCG CGGTCGCGCGCGAGCTGCTGAGGCGGGGCGCGGACCCCTGCGCCAAGACC TTCAAGGGGACGACGCCCCTCCACTTCGCGGCGTCGAACGGCGACTGCGC CCTGCTCGAGCTCCTCCTGGCCGCGGCCCCCGGGTCCCTCAATGCCGTGA ACGCGGACCACGGGACCCCCATGGCCTTCGCCGCCCACACCGGCCAGGAC AGGGCGGTGTCGTTTTTGCTGTCGGCGGGCGCGAGCGACGAGGCCATCTT GGCGCATGAGAGGAGCTCGCTCTTCCTGGCAGTGTCTCGGTGAGTAGTAC TGCTGTGGTTTGTCTAGGGCCCGAGCTCGCTGAGGGTAACACCGGGCGAT ATCTCTTAACACTCTGGAGCTCGAACAATTAGCTGCACGATGCTGGATGG AAGAAAGCTGCGCGCAGGCCCGAACCCAACCACCCGTTTCAAATCCTCTC CCAAGAACCACAGAAAGGGAAAAAAGGGTTTCTCCCCGGAATACATGTTG TTTGACCTGGCAGAGAACTGCAGGGGAGATGTTGAATCTTCAAATATTTT AGGTGTTTTTCTACTCGGCCGGCCCAATATTACGTCACTGTATGGAATAC CGAAAATTTTCACGGGAGTCCCGTCTCCAATGTGGGTTAGGTTCCATTTT TGATTATCTGCTTATCTTTCAAAAAAGGTGGGAAAAAACGAAAAAAAACG TTTTAACTACGTGCCTACTTCGTATATAGAAAGTCGATAAACACACACAC ACACGCACACACGACACACGTCTCAACTTGAAACCATCCAGCTTCGACCT GCTGCTCACTGCACGGAGCGTTAGCCGCCGCTGCCCGTTTCTTCACCTGG CACTCGCTCGTTTTCGGTCGCTTTTGGTTTGGTCTCTTTCTCTATCTATC TGTATGTAAGGGGTTTCCTCGACGTGGTGCGCGTCCTGCTCGGAGCCAAG GGGCTGCGAGCCCTCGGCGGGACCTCGGAGATCCCTCACGCGATGTGCTG CGCCGTGCAGCAGGGACAGGCGGAGGCCCTCCGCCTTCTCCTCGGCGTCG AGGGAGAGAGGCGCCGCAAGGCGTGGGCGAACCGGCTCGTTGTGGTGCCC GGCAGGCTCTCGGCGAAACAGGTGGGGTGCCTCAAAAGATCGCCAAAACG CGCAAGCTACACAAATAGTTCGTACTTCGAAAAAGTAGTCCTCCTGCTTG TATTTATTTGTGTGGTTCCAAAACTTGTTGGGGTGGGGGGGGGGCTAGGT TTGCTGCGTTGTGAGACGAGCCCAAGTGCTGCTGTTAACTCGGCTTCGTG TGGGTTTCTCAAAAAGTCCGGGGGGTGGCGACGCGCTAAAGAAGCCTCGG TCGCGTTACCCGGGCTACCCGTCATGCACCACGCCAGCCACCCCGCGCGC CGTATGTATGTTTTTCGTGTATTTATAGAAGTTATTCCGTTCGCGCGCCG TCCACGTTCCACTAAAAACCCTTGCAACACAGGTGGAAGTGCCCGCGTTG CAGTGCGCCGCCATGTACGGCTGCCTGGCGTCAACGCGCGTCCTCCTGGC GTCTGGGGCGAACGAGAGGTTCGTAGCCAGGCCCGGCGTAGACCGCGGCA TGGTGGTTGGGTTGCTGCTCGACCCCGAGGACAAGGACCCCAAGAAGGCG GGGGAGATCAGGCGGACGCTCGAGCGCGGGCCGGCGTACCGAGCCTGATC GTGGCGATGGTCCACGGCGTCGTCGTCTGTGGCGACGAGGGCTGATGGTG ACGCGCCAGCTGCAGCCGCCGTCTCGTTGGTCGTGCATATTTTCAGGCCG ACTAGCAGGTTGTTTTTCACGACACGCTTTGAAAGGTGAGAGCATGAGAT GGTGAAGAACGGTACAGATGGCATGGGCAGGACCGGGGGGGGGGGGGGGG GGGGAACCAACCATGGAAGGCATTTTGGGGCCCCGTTTTGGTGGTTGCAA AAAAAAAACTTGGGGGGGGGTGTTTTTAGCCCTAAATATGNNNNNNNNNN TGTTTGGGGTAGGGGGGGAGGGGGGGGGGGGGGAGGGGAGAGAGGGGGGG GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGCAACCAAC CATGGAAGGCATTTTGGGGCCTCGTTTTCGTGCTTGCAAAAAATAAACTT GGGGGGTGGTCTATTTAGCCCTAAATAGTCAACAAGTGTCGGTGTAGACT TCGGTGGTTGCTGCGGCAGGGGCTGCCGCCTGTATGTACGACACCTTCGT TATTCTAGGGCTGCCCCTTGGCTTAGTTTTGTACCCTTAGTTCGCACATC CTTGGAAATCGCACATCCTTCGAATTCTTATGTATGGAACCTGGTGTATG TTGTTTGTGCCTGCCTGCCTGCCTCCCTCCCCTTGTCCAGGTACTCGAAG AAGTGAACAGCGAGAGAAGGGGCAAGGAGGCATCTGTGTTGGACGCCGAA AAGCGCACTTTATGCGAAGAAGAGCATGTGTCGGGCATGGTCGAGACCGC CGCTTGGTATCGCTATTGCTTGGTATCGCCGCTACGGCTGATGGGACTTC CTCTTGGTGTTGCCGCTGGTGCTGGTGCCGTGGAAGCGACGTTGGGGTAA ATTTACGCGCCGCTCTGGTGTGCCAGTTTTGTTTTTTGTGCACCACAAGA ATCAAGTCCACCTTTGCG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig16102:490..3557-

>mRNA_L-elsbetiae_contig16102.4197.1 ID=mRNA_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2232bp|location=Sequence derived from alignment at L-elsbetiae_contig16102:490..3557- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGCCGACCAGCGGCTGCTGAAGGAGGTGGAGAGGGGTAGCCTGCA
AGGCGTGGAGGAGTCGCTCGCGGCCGGGGCCAGCGTGGACGGGTCTCGAA
GCCTGAGCTACCGGCCGCTGATGTGCGCGGCGAGGTGGGGATTCGTCAGC
ATAGCCCAGCGCCTGGTCGAGGCGGGAGCCGACCCGGAAGCCACCGCCTC
CCTCGACGCGCGCACCGGCCTGGCGGACCCCTTCTACCCGGTCGGGTCGC
GGGCGCTCCACGCCGCGGTGTCGCACGGCGCGGAGGTCGGCATGATACGG
GTGCTGGTCGAGAGCGGGGCGGACCCTGACTGCCGCGACGTCGACGGCTG
CACCCCCCTGGCGAACGCGTGCTCGCTGCTCTTCCATGACGAGCGCCGCG
CGGTCGCGCGCGAGCTGCTGAGGCGGGGCGCGGACCCCTGCGCCAAGACC
TTCAAGGGGACGACGCCCCTCCACTTCGCGGCGTCGAACGGCGACTGCGC
CCTGCTCGAGCTCCTCCTGGCCGCGGCCCCCGGGTCCCTCAATGCCGTGA
ACGCGGACCACGGGACCCCCATGGCCTTCGCCGCCCACACCGGCCAGGAC
AGGGCGGTGTCGTTTTTGCTGTCGGCGGGCGCGAGCGACGAGGCCATCTT
GGCGCATGAGAGGAGCTCGCTCTTCCTGGCAGTGTCTCGATGGCCGCCGA
CCAGCGGCTGCTGAAGGAGGTGGAGAGGGGTAGCCTGCAAGGCGTGGAGG
AGTCGCTCGCGGCCGGGGCCAGCGTGGACGGGTCTCGAAGCCTGAGCTAC
CGGCCGCTGATGTGCGCGGCGAGGTGGGGATTCGTCAGCATAGCCCAGCG
CCTGGTCGAGGCGGGAGCCGACCCGGAAGCCACCGCCTCCCTCGACGCGC
GCACCGGCCTGGCGGACCCCTTCTACCCGGTCGGGTCGCGGGCGCTCCAC
GCCGCGGTGTCGCACGGCGCGGAGGTCGGCATGATACGGGTGCTGGTCGA
GAGCGGGGCGGACCCTGACTGCCGCGACGTCGACGGCTGCACCCCCCTGG
CGAACGCGTGCTCGCTGCTCTTCCATGACGAGCGCCGCGCGGTCGCGCGC
GAGCTGCTGAGGCGGGGCGCGGACCCCTGCGCCAAGACCTTCAAGGGGAC
GACGCCCCTCCACTTCGCGGCGTCGAACGGCGACTGCGCCCTGCTCGAGC
TCCTCCTGGCCGCGGCCCCCGGGTCCCTCAATGCCGTGAACGCGGACCAC
GGGACCCCCATGGCCTTCGCCGCCCACACCGGCCAGGACAGGGCGGTGTC
GTTTTTGCTGTCGGCGGGCGCGAGCGACGAGGCCATCTTGGCGCATGAGA
GGAGCTCGCTCTTCCTGGCAGTGTCTCGGGGTTTCCTCGACGTGGTGCGC
GTCCTGCTCGGAGCCAAGGGGCTGCGAGCCCTCGGCGGGACCTCGGAGAT
CCCTCACGCGATGTGCTGCGCCGTGCAGCAGGGACAGGCGGAGGCCCTCC
GCCTTCTCCTCGGCGTCGAGGGAGAGAGGCGCCGCAAGGCGTGGGCGAAC
CGGCTCGTTGTGGTGCCCGGCAGGCTCTCGGCGAAACAGGGGTTTCCTCG
ACGTGGTGCGCGTCCTGCTCGGAGCCAAGGGGCTGCGAGCCCTCGGCGGG
ACCTCGGAGATCCCTCACGCGATGTGCTGCGCCGTGCAGCAGGGACAGGC
GGAGGCCCTCCGCCTTCTCCTCGGCGTCGAGGGAGAGAGGCGCCGCAAGG
CGTGGGCGAACCGGCTCGTTGTGGTGCCCGGCAGGCTCTCGGCGAAACAG
GTGGAAGTGCCCGCGTTGCAGTGCGCCGCCATGTACGGCTGCCTGGCGTC
AACGCGCGTCCTCCTGGCGTCTGGGGCGAACGAGAGGTTCGTAGCCAGGC
CCGGCGTAGACCGCGGCATGGTGGTTGGGTTGCTGCTCGACCCCGAGGAC
AAGGACCCCAAGAAGGCGGGGGAGATCAGGCGGACGCTCGAGCGCGGGCC
GGCGTACCGAGCCTGAGTGGAAGTGCCCGCGTTGCAGTGCGCCGCCATGT
ACGGCTGCCTGGCGTCAACGCGCGTCCTCCTGGCGTCTGGGGCGAACGAG
AGGTTCGTAGCCAGGCCCGGCGTAGACCGCGGCATGGTGGTTGGGTTGCT
GCTCGACCCCGAGGACAAGGACCCCAAGAAGGCGGGGGAGATCAGGCGGA
CGCTCGAGCGCGGGCCGGCGTACCGAGCCTGA
back to top