mRNA_L-elsbetiae_contig16102.4197.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LME6_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME6_ECTSI) HSP 1 Score: 428 bits (1100), Expect = 8.170e-144 Identity = 241/420 (57.38%), Postives = 295/420 (70.24%), Query Frame = 1 Query: 1 MAADQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGA-KGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVAR-PGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRWSTASSSVATRADGDAPAAAAVSLVVHIFRPTSRLFFTTRFER 1254 M AD+RLL+EV+ G+L+GV+E+LAAGA+V+GS LS RPL+CAARWG IA+RL+E GA+ E + + G P YPVGS ALHAAVS G EVGMIRVL++ GA+PD +D+DGCT LANACS+L DER A+ R HFAAS GDC LLELLL+ AP +N VN D GTPMAFAA TGQD+AVSFL+SAGASDEA+L+HER SLF+A+ RGF +VVRVLL + + L+A GG EI HAMC A+QQGQ E+LRLL+ V G+ R W+N+LV+VPGRLS QVEVPALQCA Y C+ ST++LL +GA+ERF+ D VGLLLD ED+D +KA EI R L R PA+RA SWRW A+++ A D AA L IF P R FFT RFE+ Sbjct: 1 MDADKRLLQEVQNGNLKGVDEALAAGANVNGSSRLSCRPLICAARWGNCKIAKRLIEKGANLELAVTDETGFGGISPLYPVGSNALHAAVSFGVEVGMIRVLLDGGANPDAQDIDGCTALANACSVLDPDERLAMVRELLRGGATAFSKTFKGTSPAHFAASKGDCRLLELLLSEAPAMINHVNDDFGTPMAFAASTGQDKAVSFLVSAGASDEAVLSHERGSLFMALCRGFTNVVRVLLSSPEALKAAGGYDEIRHAMCWAMQQGQPESLRLLISVGGKTR--YWSNQLVLVPGRLSDNQVEVPALQCAVCYQCVESTKLLLEAGADERFLTNHKPADLLGAVGLLLDAEDRDLQKAAEIVRVLRRAPAFRARSWRWPGATATPPVDAGSDPGDDAATPLGAQIFWPAGRNFFTKRFEK 418
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JSC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC7_9PHAE) HSP 1 Score: 192 bits (488), Expect = 1.020e-50 Identity = 166/409 (40.59%), Postives = 220/409 (53.79%), Query Frame = 1 Query: 16 RLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSL--LFHDERRAV-ARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAH-ERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAV--QQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRWS----------TASSSVATRADGDAPAAAAVS 1194 +LL + + + GVE +LAAGASVDGS L +RP++ AA G V +A L++ A+ + + D R G RALH A++H V + R+L+++GADPD + G TPL C L E+RAV AR XXXXXXXXXXXXXXX FAA+ L+++LL AP +LN D TP+ AA +G+ +AVS LLSAGA A + L AV +VVRVLL +G+ A+ G IP A+ A ++G+A +R+LL EG R WA + E P L CA +G +++TRVLLA+GA+E G VVG +DP K G I R L RGPAYRA SW W T +++ T A G AAAA S Sbjct: 121 QLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASGSVGMADLLIKRQANVDLGSLNDLRCSDGLEVLGKGVRALHVAINH-YHVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTDLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMEAIDGPDVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWAR----------CRYKEDPVLHCAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLARGPAYRARSWAWPATARAYTAGHTCAAAATTAAPGACGAAAASS 518
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LSK8_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSK8_ECTSI) HSP 1 Score: 192 bits (487), Expect = 1.270e-50 Identity = 158/377 (41.91%), Postives = 210/377 (55.70%), Query Frame = 1 Query: 16 RLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSL--LFHDERRAV-ARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAH-ERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAV--QQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGEIRRTLERGPAYRA*SWRW 1128 +LL + + + GVE +LAAGASVDGS L +RP++ AA V +A+ L++ AD + + D R G RALH A++H V + R+L+++GADPD + G TPL C L E+RAV AR XXXXXXXXXXXXXXX FAA+ L+++LL AP +LN D TP+ AA +G+ +AVS LLSAGA A + L AV +VVRVLL +G++A+GG IP A+ A ++G+A +R+LL EG R WA + E P L A +G +++TRVLLA+GA+E G VVG +DP K G I R LERGPAYRA SW W Sbjct: 113 QLLAYIRQRNEAGVERTLAAGASVDGSSELDWRPIIAAAASCKVGMAELLIKRKADVDLGSLNDLRCSDGLEVLGKGVRALHVAINH-YNVDVFRLLLKAGADPDSANGKGLTPLMLTCILEDSARGEQRAVMAREXXXXXXXXXXXXXXXKTALGFAAARDQTNLIDILLQKAPTTLNRATPDGLTPLYAAAMSGKGKAVSHLLSAGARQPPASAEKDMCPLVAAVRENHQEVVRVLLTDRGMKAIGGADVIPRAVGAAASARKGRASIVRMLLSAEGHEREGHWAR----------CRYKEDPVLHSAVSFGNISATRVLLAAGADETAENEDGRPAREVVGFNAPSLQRDPAKKGAIVRMLERGPAYRARSWAW 478
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5L2Q3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q3_9PHAE) HSP 1 Score: 130 bits (328), Expect = 7.960e-30 Identity = 132/413 (31.96%), Postives = 191/413 (46.25%), Query Frame = 1 Query: 10 DQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSIAQRLVEAGADPEATASLDARTGLADPFYPVGSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERR-AVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADH-----GTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEI-PHAMCCAVQQGQAEALRLLLGV-EGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLLLDPEDKDPKKAGE---IRRTLERGPAYRA*SWRWSTASSSVATRADGDAPAAAAVSLVVHIFR 1215 + RLL+ ++G L V+ ++AAGA GS + RPLM A+ G V + L++ GA+ ++ +T D +G RA H AV+ G ++ + VL+++GA D + G T L NAC A+A+ H AA+ G+ +++LLL A SL+ H TP+ A + Q +AV+ LLS GA + L AV + +VRVL A GL ++GG + + P ++ A + G+ L+LLL V G+R WAN V P L AA Y + VLLA+GA+ER G ++G LL K + IRRTL RGPAYRA SW W ++ + V L VHIFR Sbjct: 7 ENRLLRGAQKGDLPAVQAAIAAGADPSGSSNSRLRPLMVASGSGSVEVVNFLLQNGAE------MEHQTWGDDDHRFLGMRATHWAVTSG-KLDTLLVLLKAGAVYDAVNAQGETCLMNACMTDASPPTCVAMAKALLDAGADPLIEDREGQVALHHAAAQGNPNMIDLLLQAKGSSLSKKLLSHVSRWEHTPLQSALESNQVQAVAHLLSLGARATVDREGRGNLLRRAVVKNSEPIVRVLFEA-GLESVGGAARVMPDSLASAAKAGRTRLLKLLLTVGRGDRTTGYWANYYVWGG----------PLLNVAAGYATVDCVGVLLAAGADERVPDDERQTAGDMIGDLLASGSKSASFRSDKAAIRRTLLRGPAYRARSWTWPPLAAGADDAVAFPSGHPEKVPLGVHIFR 401
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D8LME7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LME7_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.540e-22 Identity = 76/193 (39.38%), Postives = 96/193 (49.74%), Query Frame = 1 Query: 295 IRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERS-SLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEGERRRKAWANRLV 870 ++ ++ +GADP+ D GC L AC + R + R H AA G L LLAAAP +LN VN TP+ A G+ +AV+ LLS GASD + RS SL AV G ++ +LLG KGL A+GG IP AM CAV + + L LLL VEGE RR WA V Sbjct: 32 LQCVLRAGADPNTPDGVGCNALQVACFDGDDERRLCIVRELLKWGANPNLRGGPYGSALHTAAKEGHTNLFTTLLAAAPATLNLVNEQGLTPLGTATSFGRHKAVTCLLSLGASDRQVFQETRSGSLQEAVVAGHDTLLSLLLG-KGLEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEGEERRTFWARTRV 223
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: D7FLL0_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL0_ECTSI) HSP 1 Score: 103 bits (256), Expect = 3.230e-20 Identity = 103/351 (29.34%), Postives = 153/351 (43.59%), Query Frame = 1 Query: 151 IAQRLVEAGADPEA---TASLDARTGLADP-FYPV-GSRALHAAVSHGAEVGMIRVLVESGADPDCRDVDGCTPLANACSLLFHDE------RRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPH-AMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLL---------LDPED----KDPKKAGEIRRTLERGPAYRA*SWRW 1128 IAQ L+E GA A S+ R + + F P+ G A HAA+ ++ ++ +L+ +GADP + G TPL L +E A+ H A G+ + +LA +P +L + D + + A + G VS LLS GA + L +A+ +G D+V++LL L A+GG A+ CA+ Q + + LR++L + GE WA+ + G L L + Y AS LLA+GANE + G V+G + L P +DP K EIRRT+ER PA+RA SW W Sbjct: 10 IAQLLIERGAHVNAGVTNPSMGTRERVVNSTFLPMQGENAFHAAICFAKKMDLVDLLLRAGADPSAGNKLGITPLM----CLAREEPPGPWLECALEVLIKAGVNPDQVDAEGWTAFLH-AVEVGNPEKIRRILALSPAALGRIAWDGMSALYVACNEGHLSVVSCLLSLGAKHPRTTIRDHCPLAVAIIKGHEDIVKILLA--NLSAVGGVELAAEMALTCAITQSRGKILRMMLNITGEENAARWADSDWGLAGSL---------LHYSCGYILPASVSALLAAGANENATDQAGQRPIDVIGTMDLQNPPLSPLHPRTPTRFRDPVKEAEIRRTVERAPAFRARSWAW 344
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JUZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ9_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.300e-11 Identity = 48/111 (43.24%), Postives = 59/111 (53.15%), Query Frame = 1 Query: 502 LLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPHAMCCAVQQGQAEALRLLLGVEG 834 L LLAAAP LN V+ TP+ A GQ +AV+ LLS GASD + RS G ++ +LL KG A+GG IP AM CAV + + L LLL VEG Sbjct: 51 LFTTLLAAAPARLNLVDEQGLTPLETATSFGQHKAVTCLLSPGASDRQVFQETRSGSLQEAVAGHDTLLPLLLFGKGFEAVGGLDSIPDAMGCAVTKSRTRTLNLLLSVEG 161
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Match: A0A6H5JQQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ9_9PHAE) HSP 1 Score: 67.4 bits (163), Expect = 1.510e-8 Identity = 73/294 (24.83%), Postives = 110/294 (37.41%), Query Frame = 1 Query: 289 GMIRVLVESGADPDCRDVDGCTPLANACSLLFHDERRAVARXXXXXXXXXXXXXXXXXXXXHFAASNGDCALLELLLAAAPGSLNAVNADHGTPMAFAAHTGQDRAVSFLLSAGASDEAILAHERSSLFLAVSRGFLDVVRVLLGAKGLRALGGTSEIPH-AMCCAVQQGQAEALRLLLGVEGERRRKAWANRLVVVPGRLSAKQVEVPALQCAAMYGCLASTRVLLASGANERFVARPGVDRGMVVGLL---------LDPED----KDPKKAGEIRRTLERGPAYRA*SWRW 1128 G + VL+++G +PD D +G T +A + G+ + +LA +P +L + D + A + G AVS+ LS G + + L +A+ +G D+ LL L A+GG A A+ Q + + LR++L + GE PG LLA+GANE + G V+G + L P +DP K EIRRT+ER PA+RA SW W Sbjct: 66 GALEVLIKAGVNPDQVDAEGWTTFLHAVEV-------------------------------------GNPEKIRRILALSPAALGRIAWDGMLALHVACNEGHLSAVSWPLSLGTKHPKTTSRDHCPLAVAIIKGHEDIANTLLA--NLSAVGGVELAAEMAPTYAITQSRGKILRMMLNITGEEN----------APGG-----------------------NALLAAGANENATGQGGQRPIDVIGTIDLQNPPLSRLHPRTPTRFRDPVKEAEIRRTVERAPAFRAWSWAW 287 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16102.4197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig16102.4197.1 >prot_L-elsbetiae_contig16102.4197.1 ID=prot_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=372bp MAADQRLLKEVERGSLQGVEESLAAGASVDGSRSLSYRPLMCAARWGFVSback to top mRNA from alignment at L-elsbetiae_contig16102:490..3557- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig16102.4197.1 ID=mRNA_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3068bp|location=Sequence derived from alignment at L-elsbetiae_contig16102:490..3557- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig16102:490..3557- >mRNA_L-elsbetiae_contig16102.4197.1 ID=mRNA_L-elsbetiae_contig16102.4197.1|Name=mRNA_L-elsbetiae_contig16102.4197.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2232bp|location=Sequence derived from alignment at L-elsbetiae_contig16102:490..3557- (Laminarionema elsbetiae ELsaHSoW15)back to top |