prot_L-elsbetiae_contig160.4143.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig160.4143.1
Unique Nameprot_L-elsbetiae_contig160.4143.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length177
Homology
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BLAST of mRNA_L-elsbetiae_contig160.4143.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 3.160e-64
Identity = 128/178 (71.91%), Postives = 144/178 (80.90%), Query Frame = 0 
Query:    1 MFRLPLLVLLLCYDVAQAFVGAPTLLNTARGNAVYTKGWGSSIARHTSAARLAAAPHRGLSAA-APPSMSLMLLAEDAT-AAPNLPVSPEQQESIISALSLVSSVLLLVIIGGAVYLSLAEWKNKKELEETSKFTSAGKLPPDLEPEAAALSRSDSEEEGNRLQRRMAKKDKRKSGKI 176
            M RL +L+LLL    AQAFVG P +L   RGNAVYTKGWGS IARHTSAAR A +  RGLSA+ APPSMSLMLLAEDA  AAP++P+SPEQQESII     +SSVLLL+II GAVYLSL EWKNKKEL+ET K+TSAG+LPPD+ PEA  L   D EEEGNRLQRRMAKK+KRKSGK+
Sbjct:    1 MLRLTILLLLL--SAAQAFVGGPNVL-IGRGNAVYTKGWGSRIARHTSAARQATS-QRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEA--LPPGDGEEEGNRLQRRMAKKEKRKSGKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig160.4143.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI3.160e-6471.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 93..117
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 118..176
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..18
score: 0.908
NoneNo IPR availableTMHMMTMhelixcoord: 93..115
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig160contigL-elsbetiae_contig160:15468..17130 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig160.4143.1mRNA_L-elsbetiae_contig160.4143.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig160 14469..17184 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig160.4143.1 ID=prot_L-elsbetiae_contig160.4143.1|Name=mRNA_L-elsbetiae_contig160.4143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MFRLPLLVLLLCYDVAQAFVGAPTLLNTARGNAVYTKGWGSSIARHTSAA
RLAAAPHRGLSAAAPPSMSLMLLAEDATAAPNLPVSPEQQESIISALSLV
SSVLLLVIIGGAVYLSLAEWKNKKELEETSKFTSAGKLPPDLEPEAAALS
RSDSEEEGNRLQRRMAKKDKRKSGKI*
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