mRNA_L-elsbetiae_contig160.4143.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig160.4143.1
Unique NamemRNA_L-elsbetiae_contig160.4143.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig160.4143.1 vs. uniprot
Match: D7G729_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G729_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 6.350e-60
Identity = 128/178 (71.91%), Postives = 144/178 (80.90%), Query Frame = 1 
Query:   55 MFRLPLLVLLLCYDVAQAFVGAPTLLNTARGNAVYTKGWGSSIARHTSAARLAAAPHRGLSAA-APPSMSLMLLAEDAT-AAPNLPVSPEQQESIISALSLVSSVLLLVIIGGAVYLSLAEWKNKKELEETSKFTSAGKLPPDLEPEAAALSRSDSEEEGNRLQRRMAKKDKRKSGKI 582
            M RL +L+LLL    AQAFVG P +L   RGNAVYTKGWGS IARHTSAAR A +  RGLSA+ APPSMSLMLLAEDA  AAP++P+SPEQQESII     +SSVLLL+II GAVYLSL EWKNKKEL+ET K+TSAG+LPPD+ PEA  L   D EEEGNRLQRRMAKK+KRKSGK+
Sbjct:    1 MLRLTILLLLL--SAAQAFVGGPNVL-IGRGNAVYTKGWGSRIARHTSAARQATS-QRGLSASMAPPSMSLMLLAEDAAKAAPDMPISPEQQESIIXXXXXMSSVLLLIIISGAVYLSLEEWKNKKELKETDKYTSAGQLPPDIAPEA--LPPGDGEEEGNRLQRRMAKKEKRKSGKV 172
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig160.4143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G729_ECTSI6.350e-6071.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig160contigL-elsbetiae_contig160:14469..17184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_011250.1
Exons3
Model size1584
Cds size531
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig160.4143.1prot_L-elsbetiae_contig160.4143.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig160 15468..17130 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.093737-UTR-L-elsbetiae_contig160:14468..154671622815660.093737-UTR-L-elsbetiae_contig160:14468..15467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 14469..15467 -
1691683020.767976-UTR-L-elsbetiae_contig160:14468..154671691683020.767976-UTR-L-elsbetiae_contig160:14468..15467Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 14469..15467 -
1622815660.1381712-UTR-L-elsbetiae_contig160:17130..171841622815660.1381712-UTR-L-elsbetiae_contig160:17130..17184Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 17131..17184 -
1691683020.8145068-UTR-L-elsbetiae_contig160:17130..171841691683020.8145068-UTR-L-elsbetiae_contig160:17130..17184Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig160 17131..17184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.1056247-CDS-L-elsbetiae_contig160:15467..156611622815660.1056247-CDS-L-elsbetiae_contig160:15467..15661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 15468..15661 -
1691683020.7786121-CDS-L-elsbetiae_contig160:15467..156611691683020.7786121-CDS-L-elsbetiae_contig160:15467..15661Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 15468..15661 -
1622815660.1166165-CDS-L-elsbetiae_contig160:16466..167001622815660.1166165-CDS-L-elsbetiae_contig160:16466..16700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 16467..16700 -
1691683020.7952325-CDS-L-elsbetiae_contig160:16466..167001691683020.7952325-CDS-L-elsbetiae_contig160:16466..16700Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 16467..16700 -
1622815660.1262562-CDS-L-elsbetiae_contig160:17027..171301622815660.1262562-CDS-L-elsbetiae_contig160:17027..17130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 17028..17130 -
1691683020.8061643-CDS-L-elsbetiae_contig160:17027..171301691683020.8061643-CDS-L-elsbetiae_contig160:17027..17130Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig160 17028..17130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig160.4143.1

>prot_L-elsbetiae_contig160.4143.1 ID=prot_L-elsbetiae_contig160.4143.1|Name=mRNA_L-elsbetiae_contig160.4143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=177bp
MFRLPLLVLLLCYDVAQAFVGAPTLLNTARGNAVYTKGWGSSIARHTSAA
RLAAAPHRGLSAAAPPSMSLMLLAEDATAAPNLPVSPEQQESIISALSLV
SSVLLLVIIGGAVYLSLAEWKNKKELEETSKFTSAGKLPPDLEPEAAALS
RSDSEEEGNRLQRRMAKKDKRKSGKI*
back to top

mRNA from alignment at L-elsbetiae_contig160:14469..17184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig160.4143.1 ID=mRNA_L-elsbetiae_contig160.4143.1|Name=mRNA_L-elsbetiae_contig160.4143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2716bp|location=Sequence derived from alignment at L-elsbetiae_contig160:14469..17184- (Laminarionema elsbetiae ELsaHSoW15)
GCCGACCCAGCTCCGGCACGACTCGCCGCTGGAGTGCTCCCGCCGGCCGC
CACCATGTTCCGGCTACCTCTTCTTGTTCTTCTTCTCTGCTACGACGTGG
CACAGGCTTTCGTGGGTGCACCCACCCTTCTGAATACGGCGAGGGGCAAT
GCCGTCTGTGAGTGCTCATGATCATGCTTGCTTTGACTCGATGATCGTGT
AGGACTTCGAATCAGATCAGATTTACAAAGAATGCGTGCTGTATGTACCT
CGTGGACATAAATGAGCGCCAACATCTTCGACGAAGCACAAATTGTGTGC
GTTGTTTTCAAAGATGAACCTGTACCGACCGAACTCTGTCTCACACTTTT
TCCAGATTACCGTGTGGAGGTCATGTTGGGACAGGTATGTAGCGGTCATG
GCTCAGATGCCGCACCACGCTATACATACAGAGCGCCCGTTAACTCACCA
GCGCTGTATGGTTTATTGCCCTGATTTCTCCCAGATACCAAAGGATGGGG
ATCCAGTATAGCTCGACACACGAGTGCGGCGAGGCTAGCGGCGGCTCCTC
ACCGTGGGCTCTCCGCAGCGGCCCCTCCTTCCATGAGCTTGATGCTCCTC
GCAGAGGACGCGACAGCAGCACCAAACTTGCCGGTGTCTCCGGAGCAGCA
GGAGTCTATTATCTCTGCACTGAGCCTGGTGTCCTCGGTGCTGCTTCTCG
TTATTATCGGAGGAGCTGGTGAGATAGGTCCTGAGAGCTCGCCGCTCTGT
GTGTGTGTCCACGTCTACATACTTGAGTAATGTGCAGCACTGTTTACTAG
TAGAAGTAGGTAGCTTATTTCTACATATAATTCTCAGGCCGCCTGCGCCA
CAGAGCTCCTAGCAGGGTTTCCTTCCTCCAACTCCCAACTCCCCGCTCCT
TGAAAAATAAAACAGCAGTGGATGGGGTACCTGGTGCAGAGTATAACTAT
TTCGTTATTTCAGCAAAGATCGCCCCAAAGAGCCAGGTCTCGCTCATGTT
GCAACAGGTAGCGTTTGAAAATGGTTTGCTCTCGCTCTGACAGCAGTCCC
GCTTGACTTGCTTCGGTCGAGTCAGGTAGCATGTGTTGAAAAGCGATCGA
AATCGTGTGTCCGCGCTTTGGCGACGGTCTAGTTTCAACCGGGGTTTGTT
GAACTGCAAGGCATGGAAATGGACCGCACACGCGACGTCGTAGTTATGTC
GCAACTATTGTATGACCTCGGAGAGGAGCTGTGCGTAAGAAACGCCGACG
AGCGCTACTTACAGCAGAGTCACAGAGCCGGGCACAAAAAATTCAGCGCA
CAACACATCCTTCATTCCGGTGCCCTGCCTAGAGTTCGGTTTTCTTCGGT
TTTTCTTCCTTCAGAACGTACGTAGATAGTGTCTCGCAAAGGGCGTTGCA
TTTCGCTCCTCGGTTTTTCTATATTCTACGAGTGTGTCGGGTGTTTTTCT
TCTTGACAGCGACCCCGTCCGTCCGTCCGTCCGTCCGATTGTCGTATCTT
CGCGTGGCGTTTCCCCCGGAAAGTTTACTTGTCGCTGGCGGAGTGGAAGA
ACAAGAAGGAGCTGGAAGAGACGAGCAAGTTTACCAGCGCCGGAAAGCTT
CCCCCGGACCTCGAACCCGAGGCGGCAGCGTTATCGCGTAGCGACTCGGA
AGAGGAAGGGAACAGATTGCAACGACGCATGGCGAAGAAGGACAAGCGGA
AATCGGGCAAGATTTAAACTTACTCGACGCACGCACGCTGCAGATATTCC
AAGAAACGGAACAAAACCCGCCGTGACGAGAGGGAGCAAGCTTGGCGTAG
CGACGATCCAGGCCATGGTTGGTTTGCCGTGCTTTGCTGAGCGATGTCTG
CCGCATCGTGTGTTATCTCGCGTTCCTGCGTAGCTTCGTTGCAATAGTCT
AGGTTCGGCGCTTTCTGGAATATGGGCGGTGGTTTGGTGTGTTCCGGATA
TATGTCTGTCCGTACCCGTGTGAGCCTGCCGATTCGCAGTCTAGCATGCT
TGCGCTGACTACAGGGTTGCCCGCGTAGCGTAGCGGATGAGCGGCTGTGT
TGTTCTGGTAGGCTTTTTTCAGATCCATTTGTGTTTCCCTCGGCCTTGCA
AGAGCTCCCGTTTCGAAGGACTGCCATATTTCTGGTCGTTGAAAGGGGTG
AGGTTTGGGGTGATTTCATATTAGTCCAAGGTCTCTCCTGGACGGGCACA
GATGCGTGTGTTTTGAGATGGTGTGGCTACAAGAGCGACCCCCTACAAGC
TTCAACTTTTTCACGTAAGGTGCATGCGGAGGTCTGGGATGTTACAACCT
CATTCACCCATCAACGTGGAGGCCTGACTTTTTTTAGAATTCGGGTGTGT
GTGCGAGTCCTTTTCCTTTTTATTTAGTATGTTTCCTAGACGCCAGCCTT
GACCTTTTCGGTGTAGGATTGACGCATCCGCTGGGGTCACAGGAGGTTCT
TGAGTCTGTTTACCGTGTGAAGTAGAGCCTGTCTTTGCACCTCTGTTGCT
TGATATTGATATTTATCACTTCACCCGGTTTCGTTGCCGCAGACTCCTGG
GTGTCTCGTTCGAACACTTGATTCAATGTGATGTTCCCAAACACAGGAAC
TCAACAATTCCGCGGTGCCTCTGAGTCACCGTGGAAGGACGATACTGTGG
TTAAAGTCTCGGAGAATACAGGCATCAGGACACGTGCGTGCTTACATATT
TTGTTGAGGCCAAGCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig160:14469..17184-

>mRNA_L-elsbetiae_contig160.4143.1 ID=mRNA_L-elsbetiae_contig160.4143.1|Name=mRNA_L-elsbetiae_contig160.4143.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig160:14469..17184- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTCCGGCTACCTCTTCTTGTTCTTCTTCTCTGCTACGACGTGGCACA
GGCTTTCGTGGGTGCACCCACCCTTCTGAATACGGCGAGGGGCAATGCCG
TCTATGTTCCGGCTACCTCTTCTTGTTCTTCTTCTCTGCTACGACGTGGC
ACAGGCTTTCGTGGGTGCACCCACCCTTCTGAATACGGCGAGGGGCAATG
CCGTCTATACCAAAGGATGGGGATCCAGTATAGCTCGACACACGAGTGCG
GCGAGGCTAGCGGCGGCTCCTCACCGTGGGCTCTCCGCAGCGGCCCCTCC
TTCCATGAGCTTGATGCTCCTCGCAGAGGACGCGACAGCAGCACCAAACT
TGCCGGTGTCTCCGGAGCAGCAGGAGTCTATTATCTCTGCACTGAGCCTG
GTGTCCTCGGTGCTGCTTCTCGTTATTATCGGAGGAGCTGATACCAAAGG
ATGGGGATCCAGTATAGCTCGACACACGAGTGCGGCGAGGCTAGCGGCGG
CTCCTCACCGTGGGCTCTCCGCAGCGGCCCCTCCTTCCATGAGCTTGATG
CTCCTCGCAGAGGACGCGACAGCAGCACCAAACTTGCCGGTGTCTCCGGA
GCAGCAGGAGTCTATTATCTCTGCACTGAGCCTGGTGTCCTCGGTGCTGC
TTCTCGTTATTATCGGAGGAGCTGTTTACTTGTCGCTGGCGGAGTGGAAG
AACAAGAAGGAGCTGGAAGAGACGAGCAAGTTTACCAGCGCCGGAAAGCT
TCCCCCGGACCTCGAACCCGAGGCGGCAGCGTTATCGCGTAGCGACTCGG
AAGAGGAAGGGAACAGATTGCAACGACGCATGGCGAAGAAGGACAAGCGG
AAATCGGGCAAGATTTAATTTACTTGTCGCTGGCGGAGTGGAAGAACAAG
AAGGAGCTGGAAGAGACGAGCAAGTTTACCAGCGCCGGAAAGCTTCCCCC
GGACCTCGAACCCGAGGCGGCAGCGTTATCGCGTAGCGACTCGGAAGAGG
AAGGGAACAGATTGCAACGACGCATGGCGAAGAAGGACAAGCGGAAATCG
GGCAAGATTTAA
back to top