mRNA_L-elsbetiae_contig15966.4113.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: D8LK31_ECTSI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK31_ECTSI) HSP 1 Score: 474 bits (1219), Expect = 3.510e-164 Identity = 262/376 (69.68%), Postives = 291/376 (77.39%), Query Frame = 1 Query: 1 FMQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKE---EEANKMGEESSSDS--SSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSC-DMGRYENFLRAEAATLEELIEVEGRCKWAELALLLVSQRLANALEPPQQXXXXXXXXXXXXXXXEASTGGDADEAAKVRTSCRSMAARLSELDPMHRRFYEFVERGGSVFG-EHVGGAAGET 1107 + +VVGAIRHKRA GQMD EYKQLLGKLLRLHPDYYSMWNFRKEAVLAELS I D S++ ++ +K EE SS + S + +E ++K +Y+EEL LSVDCIKRNPKSYPAWHHHKWALERGLDLLG RSAL+ AERMGLSA+EEF+FTTDKIKQNFSNYSAFHFRSKVLPRMVEEAG+DRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWA++G SC D RYEN LRAEAATL ELIEVE RCKWAE+ALLLVSQRLANALEP Q XXXXXXXXX + G + EA +VR SCR MAARLSELDPMH RFYEFVE+GG+V G + + G+A E Sbjct: 26 YKKVVGAIRHKRATGQMDAEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSRIEDAHSRQGGSDDGDKAAEEISSGTLLSPSVQEQQKKK----IYEEELALSVDCIKRNPKSYPAWHHHKWALERGLDLLGGRSALAGDLALCATFLELDGRNFHCWAHRMWVAERMGLSAREEFDFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGHDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWADDGTDSCSDSERYENILRAEAATLGELIEVEVRCKWAEVALLLVSQRLANALEPRPQPPRAQDXXXXXXXXXVTAAGNGSTEAGEVRESCRGMAARLSELDPMHGRFYEFVEKGGTVMGGQQMRGSAREA 397
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A835Z1Z5_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z5_9STRA) HSP 1 Score: 199 bits (506), Expect = 2.040e-57 Identity = 121/328 (36.89%), Postives = 163/328 (49.70%), Query Frame = 1 Query: 70 LLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAG-NDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSCDM-GRYENFLRAEAATLEELIEVEGRCKWAELALLLVSQRLANALEPPQQXXXXXXXXXXXXXXXEASTGGDADEAAKVRTSCRSMAARLSELDPMHRRFYE 1047 ++ K++R++PDYYSMWN+RKEA L L E K+G + ER+A V ++EL L+ KRNPK Y AWHH +W LERG D +G +A E+ GLSA+E+F FTT+KI +NFSNYSAFH+RSK+LP + E G L+ EL++ H A FTEP DQS WWYH FL+ WA E + +Y L+ E + EL+ VE RCKWA L+ L AL A T D E ++ RS+ L ++DPMH+ +Y+ Sbjct: 55 VVDKVVRVNPDYYSMWNYRKEAALPILEAA-------EGQAKVGVQ------------ERRAQ---VVEQELALAAAAFKRNPKCYSAWHHRRWVLERGADAIGGEAAYRRELELCRQFLLLDSRNFHCWAYRGWVVEQAGLSAEEDFAFTTEKILENFSNYSAFHYRSKLLPAVAEARGAGGVLTLVEQELEMVHQAFFTEPDDQSAWWYHRFLVGWAAEALHGTEHHDKYPELLQKEVDCIRELLFVEERCKWA----LVTLHHLLCAL---------------------ARTAQDT-EGVELMAEARSLVTTLVDVDPMHKSYYD 334
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A7S1TWU3_9STRA (Geranylgeranyl transferase type-2 subunit alpha (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWU3_9STRA) HSP 1 Score: 140 bits (354), Expect = 5.140e-35 Identity = 119/276 (43.12%), Postives = 155/276 (56.16%), Query Frame = 1 Query: 19 AIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGER-SALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSCDMGRYENFLRAEAATLEELIEVEGRCKWAELAL 843 A++ R G L +LLR++PD YS WN R+E + A + GE + A + L V EL L+ + ++R PKSYPAWHH +W LER L G+R +A +EXXXXXXXXXXXXXXXXXXXXXXXX A G++ +E +T D++ NFSNYSAFH RS+VLPR+ E D +L++EL L + TEP DQS WWY+ FLL A + G LR E L +L+E+E CKWA + L Sbjct: 78 ALQDVRRRGDNSDAAVDLGAQLLRVNPDAYSAWNHRREMLFARTTAA------------AGETEGGGAGGAWE------LAADVAAGELRLTAEALRRQPKSYPAWHHRRWVLER---LAGDRETAFAEXXXXXXXXXXXXXXXXXXXXXXXXAAAVAGVTPEENLAYTQDRLDVNFSNYSAFHERSQVLPRL-EAYREDPLAVLAEELMLVQNITVTEPEDQSAWWYYRFLL--AALLQVEAEDGVKLTALRGEQQNLRDLLELETDCKWALVML 329
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A7R9U2X8_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2X8_9STRA) HSP 1 Score: 139 bits (350), Expect = 2.490e-34 Identity = 113/263 (42.97%), Postives = 147/263 (55.89%), Query Frame = 1 Query: 34 RANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSCDMGRYENFLRAEAATLEELIEVEGRC 822 R G K L +LLR++PD YS+WN+R++ + A SG E++ +S A + V QEELV+S + +KR PKSYPAW+H KW L+R L+ ER+ SEXXXXXXXXXXXXXXXXXXXXX A G++ +E + +T D++ NFSNYSAFH RS++L + E G D+ L ELD T P DQS WWY+ FLL + A + LR E L EL+EVE C Sbjct: 52 RDKGTFTSAAKDLTAQLLRVNPDNYSVWNYRRQILFA--SG----------------ETAPESWKAPPD---------VAQEELVMSAEALKRQPKSYPAWYHRKWILDR-LESGRERTLQSEXXXXXXXXXXXXXXXXXXXXXRYV-AHLAGVTPEENYEYTEDRLNANFSNYSAFHERSRILASLAEY-GEDKISTLQQELDFVQQITVTAPDDQSAWWYYRFLLAAVTDDA-DIPIEEKLRLLRQEVGRLNELVEVELEC 283
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: UPI000C78249F (geranylgeranyl transferase type-2 subunit alpha-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C78249F) HSP 1 Score: 132 bits (333), Expect = 4.420e-31 Identity = 79/244 (32.38%), Postives = 125/244 (51.23%), Query Frame = 1 Query: 1 FMQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEG 732 + + +G + +RA G++D + + G++L+ +PD ++WN RKE + L I GT KE++ + GE+ + +E + EL L+ C+ NPKSY AWHH W LE ++ S A++ G+ Q+E FT +KI++NFSNYSA+H+RSK+LP + + + + + ELDL +A FT+PAD S W+YH +LL EG Sbjct: 28 YRKAMGVLLSRRAEGKLDDQQLVISGQVLQGNPDISTLWNIRKEIL---LHYINLGTQKEKDVGE-GEKGQEEVDCGKEENVPMHDQDEMLSSELDLTQQCLIANPKSYGAWHHRTWCLEHMIN-----PDWSRELALCRKFLKLDERNFHCWDYRKWVADKAGVKPQQELEFTLEKIEENFSNYSAWHYRSKLLPLLNPDTSSIQEDQVHKELDLVQNAAFTDPADSSAWFYHTWLLGQESEG 262
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A0P1AIP1_PLAHL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIP1_PLAHL) HSP 1 Score: 128 bits (322), Expect = 2.490e-30 Identity = 97/353 (27.48%), Postives = 154/353 (43.63%), Query Frame = 1 Query: 1 FMQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSCDMGRYENFLRAEAATLEELIEVEGRCKWAELALLLVSQRLANALEPPQQXXXXXXXXXXXXXXXEASTGGDADEAAKVRTSCRSMAARLSELDPMHRRFYEFVER 1059 + +V G + + + L LL L+P+++ +WN+R++ + A A+K + A + + + EL L++D ++RNPKSY W KW ++ L L + L + E + +++ FTT KI+QNFSNYSA H RS LP+ + +++ DE++L A+FTEP DQS W+Y+ +L+T E S E FL+ +A LEEL+E+E KWA + L + RL + + GG E AKV C + R LDP HR +Y+ ++R Sbjct: 31 YHEVAGKVLDLKRQQFFEPSVLPLTSHLLLLNPEFHMVWNYRRQTIDA---------------------------LATKSADPAAEWQELAKTELKLTLDALQRNPKSYSTWFQRKWIIDHRLGDLQKEIGLCDKLLNLDERNFHCWNYRRHV------CELANVPKEDQLAFTTQKIEQNFSNYSALHHRSINLPKPLTA------EVIFDEIELIQQAVFTEPDDQSAWFYYRWLVTSMVELVKSSAENAVE-FLKKQAQWLEELVEMEAEAKWAIVTLADICGRLGVII----------------------NVGGW--EEAKVH--CLDLYDRAIALDPDHRSYYDDMKR 317
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A225WMF4_9STRA (Geranylgeranyl transferase type-2 subunit alpha n=3 Tax=Phytophthora TaxID=4783 RepID=A0A225WMF4_9STRA) HSP 1 Score: 125 bits (315), Expect = 1.230e-29 Identity = 94/349 (26.93%), Postives = 151/349 (43.27%), Query Frame = 1 Query: 1 FMQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSCDMGRYENFLRAEAATLEELIEVEGRCKWAELALLLVSQRLANALEPPQQXXXXXXXXXXXXXXXEASTGGDADEAAKVRTSCRSMAARLSELDPMHRRFYE 1047 + +V G + + + L LL L+P+++ +WN+R++A+ A A K +A ++ + + EL L++D ++RNPKSY AW KW ++RGL L + L + + G+S ++ FTT KI+QNFSNYSA H RS LP + ++ +E+ L A+FTEP DQS W+Y+ +L+T E S FL+++ L+EL E+E KW +AL + R+ E G +++ K + R+ +LDP HRR+YE Sbjct: 31 YHEVAGKVLDMKRQQVYEPSVLPLTSHLLLLNPEFHVVWNYRRQAIDA---------------------------LAQKAENPEAEMQEMAKTELKLTLDALQRNPKSYSAWFQRKWIIDRGLGDLKKEIGLCDKLLNLDERNFHCWNYRRHV------GKLAGMSEDDQLGFTTQKIEQNFSNYSALHHRSISLPDPLTA------DVVFEEIGLVQQAVFTEPDDQSAWFYYRWLVTSMLELVESSAEDT-AGFLKSQVQWLDELQEMETEAKWVIVALADLHYRIGTITEV-----------------------GGWEQSKKQSVD---LYHRVIDLDPDHRRYYE 313
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A2B4S3B1_STYPI (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S3B1_STYPI) HSP 1 Score: 127 bits (318), Expect = 1.460e-29 Identity = 88/291 (30.24%), Postives = 138/291 (47.42%), Query Frame = 1 Query: 1 FMQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMV--EEAGNDRWQ--LLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATS--CDMGRYE------NFLRAEAATLEELIEVE--GRCKWA 831 + + I KR NG+MD E L ++L +PD+ ++WNFR+E L + D + EE ++ + Q+EL +C++ NPKSY W+H +W +E + E ++ +S +EFNF+T+KIK+NFSNYS++H+RSK+LP + + G++R + L E DL +A FT+P DQS W+YH +LL E G C MGR E + L+ E + L+E E +CK++ Sbjct: 28 YTETTSRIYQKRKNGEMDKESLSLSEQVLAANPDFSTLWNFRREVFLHKK----DESPPEE-------------------------IQDLCQKELFFLKNCLQVNPKSYGVWYHRQWIME-----FMPQPNWKEELQLCNKFLSYDERNFHCWDYRRYTVQKANVSPMDEFNFSTEKIKENFSNYSSWHYRSKLLPLIHPDQSGGSERVEEGALMKEFDLAQNAYFTDPYDQSAWFYHRWLLG-REMGYLELICQMGRSELTAVHSSVLQQELESCRLLLEEEPDNKCKYS 283
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A0M0JE27_9EUKA (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JE27_9EUKA) HSP 1 Score: 126 bits (316), Expect = 2.020e-29 Identity = 87/296 (29.39%), Postives = 130/296 (43.92%), Query Frame = 1 Query: 19 AIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWALERG---------LDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDR----WQLLSDELDLTHDAMFTEPADQSVWWYHHFLLTWAEEGATSC-DMGRYENFLRAEAATLEELIEVEGRCKWAELALLLVSQRL 864 A +RA D + + K++ +PD+ +MWNFR+E VL + D A + E L+ +C+ NPKSYP W+H +W L G L L + AL + G++A+ E FTT KI+ NFSNYSA+H+RSK+LP + AG + +L +EL+L +A FT P D S W+YH +L+ GA + +E +RAE ++EL+E+E CKW A + + L Sbjct: 32 AAMERRAAKVYDAASLEAVAKVVTENPDFATMWNFRRE-VLGHMFPDAD----------------------------VAARKAACLAEFALTQECLGINPKSYPVWYHREWVLLWGECEWQWPVELKLTAKLLALDDRNFHCWTYRRNVVRVA-------------GVTAEAELAFTTTKIQANFSNYSAWHYRSKLLPAVHASAGAEGAAQLGAVLRNELELVRNAFFTAPEDSSAWFYHRWLIAQLAPGAAAALPPAEFEALVRAELQMVDELLELEPECKWPLAAAAFLGRTL 285
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Match: A0A8J5DNR5_9CHEL (Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DNR5_9CHEL) HSP 1 Score: 124 bits (311), Expect = 2.140e-29 Identity = 78/240 (32.50%), Postives = 118/240 (49.17%), Query Frame = 1 Query: 31 KRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSGIGDGTSKEEEANKMGEESSSDSSSASKETERKALLRGVYQEELVLSVDCIKRNPKSYPAWHHHKWAL--------ERGLDLLGERSALSEXXXXXXXXXXXXXXXXXXXXXXXXXAERMGLSAQEEFNFTTDKIKQNFSNYSAFHFRSKVLPRMVEEAGNDRWQL----LSDELDLTHDAMFTEPADQSVWWYHHFLL 714 KR N ++D + +L ++L L+PD+YS+WNFRKE +L T KEEE K+ ++++L + C++ NPKSY AWHH W + ER L + + L E + G+S +E F+++KI+ NFSNYSA+H+RSK+LP + AGN ++ L +E +L +A FT+P DQS W+YH +LL Sbjct: 38 KRENRELDEDALKLTTEILSLNPDFYSLWNFRKEIILEFKR-----TRKEEEIIKL------------------------FKDDLGFTEICLRNNPKSYCAWHHRHWVMQNTPKPDWERELKICNQYLLLDERNFHCWDYRRFV-------------VQESGISNNKELEFSSEKIENNFSNYSAWHYRSKLLP--LVHAGNSYKKIDESKLLEEFELVQNAAFTDPNDQSAWFYHRWLL 233 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15966.4113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15966.4113.1 >prot_L-elsbetiae_contig15966.4113.1 ID=prot_L-elsbetiae_contig15966.4113.1|Name=mRNA_L-elsbetiae_contig15966.4113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=369bp MQVVGAIRHKRANGQMDGEYKQLLGKLLRLHPDYYSMWNFRKEAVLAELSback to top mRNA from alignment at L-elsbetiae_contig15966:398..2638+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig15966.4113.1 ID=mRNA_L-elsbetiae_contig15966.4113.1|Name=mRNA_L-elsbetiae_contig15966.4113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2241bp|location=Sequence derived from alignment at L-elsbetiae_contig15966:398..2638+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig15966:398..2638+ >mRNA_L-elsbetiae_contig15966.4113.1 ID=mRNA_L-elsbetiae_contig15966.4113.1|Name=mRNA_L-elsbetiae_contig15966.4113.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2214bp|location=Sequence derived from alignment at L-elsbetiae_contig15966:398..2638+ (Laminarionema elsbetiae ELsaHSoW15)back to top |