mRNA_L-elsbetiae_contig10392.404.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10392.404.1
Unique NamemRNA_L-elsbetiae_contig10392.404.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10392.404.1 vs. uniprot
Match: D8LKD7_ECTSI (ACB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKD7_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 5.020e-63
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 1 
Query:  241 LLASSGSWSEAPDDQALTKKFRVSLMFYTKELMANAKQYGEGDKLALYGLFKQAKWGDCPAGLVSAQRDNPVGSVKVRAWVTNRGKPTSQAMEEFIAVLGRVSPGWESRVLRPSSSD 591
            +LAS+GSWSEAPDD ALTKKFRVSLMFYTKELMANA+QYGE DKLALYGLFKQAKWGDCP GLV+AQR NPVGSVKVRAWVTNRGKPT+QAM+EFI VLGRVSPGWESRV+   +SD
Sbjct:   86 MLASTGSWSEAPDDLALTKKFRVSLMFYTKELMANARQYGEADKLALYGLFKQAKWGDCPDGLVTAQRGNPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVISGNSD 202
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BLAST of mRNA_L-elsbetiae_contig10392.404.1 vs. uniprot
Match: A0A6H5LAN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN0_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 4.270e-57
Identity = 99/120 (82.50%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:  232 SKILLASSGSWSEAPDDQALTKKFRVSLMFYTKELMANAKQYGEGDKLALYGLFKQAKWGDCPAGLVSAQRDNPVGSVKVRAWVTNRGKPTSQAMEEFIAVLGRVSPGWESRVLRPSSSD 591
            S  +L S+GSWSEAPDD ALTKKFRVSLMFYTKELM+NA+QYGE DKLALYGLFKQAKWGDCPAG+V+AQR +PVGSVKVRAWVTNRGKPT+QAM+EFI VLGRVSPGWESRV+   +SD
Sbjct: 1726 SSSMLPSTGSWSEAPDDVALTKKFRVSLMFYTKELMSNARQYGEADKLALYGLFKQAKWGDCPAGMVAAQRGDPVGSVKVRAWVTNRGKPTAQAMQEFIVVLGRVSPGWESRVVMSGNSD 1845
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10392.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKD7_ECTSI5.020e-6386.32ACB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LAN0_9PHAE4.270e-5782.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10392contigL-elsbetiae_contig10392:575..3692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAcyl-CoA-binding protein, ACBP
Ec32 orthologEc-05_001140.1
Exons4
Model size1001
Cds size999
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10392.404.1prot_L-elsbetiae_contig10392.404.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10392 577..3692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815265.154141-CDS-L-elsbetiae_contig10392:576..10321622815265.154141-CDS-L-elsbetiae_contig10392:576..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 577..1032 -
1691682805.155693-CDS-L-elsbetiae_contig10392:576..10321691682805.155693-CDS-L-elsbetiae_contig10392:576..1032Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 577..1032 -
1622815265.1669788-CDS-L-elsbetiae_contig10392:1974..21871622815265.1669788-CDS-L-elsbetiae_contig10392:1974..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 1975..2187 -
1691682805.1728103-CDS-L-elsbetiae_contig10392:1974..21871691682805.1728103-CDS-L-elsbetiae_contig10392:1974..2187Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 1975..2187 -
1622815265.1849382-CDS-L-elsbetiae_contig10392:3239..35231622815265.1849382-CDS-L-elsbetiae_contig10392:3239..3523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 3240..3523 -
1691682805.1846364-CDS-L-elsbetiae_contig10392:3239..35231691682805.1846364-CDS-L-elsbetiae_contig10392:3239..3523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 3240..3523 -
1622815265.1945825-CDS-L-elsbetiae_contig10392:3646..36921622815265.1945825-CDS-L-elsbetiae_contig10392:3646..3692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 3647..3692 -
1691682805.201628-CDS-L-elsbetiae_contig10392:3646..36921691682805.201628-CDS-L-elsbetiae_contig10392:3646..3692Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10392 3647..3692 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10392.404.1

>prot_L-elsbetiae_contig10392.404.1 ID=prot_L-elsbetiae_contig10392.404.1|Name=mRNA_L-elsbetiae_contig10392.404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=333bp
TTKSAAPTAAAAAAAVAEAAAAAAAAAVAASGQAAEGAAGGAGGGVRGAG
AASSGARAGAGGKAASGAGAAAGAAAGSKILLASSGSWSEAPDDQALTKK
FRVSLMFYTKELMANAKQYGEGDKLALYGLFKQAKWGDCPAGLVSAQRDN
PVGSVKVRAWVTNRGKPTSQAMEEFIAVLGRVSPGWESRVLRPSSSDGAS
THPKTTVAATRGTPRRPSSTFSSASSTTLSSSPSAATATAASTATAAAAA
AAVAASPLAMPASSAEAVGGGPLRPLARVTSAGSSGMSSPEELSRLPVSR
TNGASAARGQKHHGRRGDVGTVVPASGSAAAAA
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mRNA from alignment at L-elsbetiae_contig10392:575..3692-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10392.404.1 ID=mRNA_L-elsbetiae_contig10392.404.1|Name=mRNA_L-elsbetiae_contig10392.404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3118bp|location=Sequence derived from alignment at L-elsbetiae_contig10392:575..3692- (Laminarionema elsbetiae ELsaHSoW15)
ACCACCAAGTCTGCTGCCCCAACCGCCGCCGCAGCGGCCGCGGCGGGTTT
GTCGCCGCCAGGGCGGCCCGCCGCCGCCGTGGCCTCCTCCGACCTCCTGG
ACAGCGCGCTGACCGCGCCGCCGGACAACGGCCCCCGGCCGGGATCGGGG
AAGTGGCCGGGCCTGACAGTAGCGGAGGCGGCAGCGGCGGCGGCCGCGGC
GGCGGTGGCGGCATCTGGCCAGGCGGCCGAGGGGGCAGCCGGTGGTGCCG
GCGGCGGTGTGAGAGGGGCGGGGGCGGCCTCGTCGGGGGCGCGGGCCGGC
GCCGGCGGCAAGGCGGCGTCCGGCGCCGGGGCCGCGGCGGGAGCCGCGGC
TGGAAGCAAGATACTGCTCGCGTCGTCTGGCAGCTGGTCGGAGGCTCCGG
ACGACCAGGCGCTCACCAAAAAGTTCAGGGTTTCCCTCATGTTCTACACC
AAGGTGCGTAGGTTGCTTGGTTAGTTTGTTTCGACGGCTCGGTTTGTCTT
TTGTTGGTGTTTGTTTGTCGAAGATTTTTTTCCCGAAACTCTGACACATG
ACGTCATTGCTGCATATACGAACATGTGTGACCCCGGTTGGGGTCGTGTA
AATGGCTAAAAAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCACACGGCG
AATAAGCCAACATTGGGAGGAGAAAAATAAAATTAAATAAAGAAACACGC
ACGGCGTTGCAAGCGTCCTTGGCGTGTCGGAAGGCCTGCATGCCTACTAT
TTAGCGGCGGCGCTAGCAGGCCGCTTGCAACCATACCGCCCGTGGCGAAG
TTGAGGGCTTCCCTCGCTCACCGTTGTATTTTACCTATAGAGGCTTCGGA
GGTTGGCTCGCGATCAATCATCCCCAGAGTTCGCAGGCTATCTACGGTGA
ACCTCGTGTGTGTGTGTGTGCGTGTGTGCGTTTGAGGAGGCCGTCGATGG
CCAGCACCAGTACTGCATGTCGAAAAGTCCATTACTTCTACTCTGCTGTA
CCCCGAGAATATGTCGACCCTCGTGGGCCCTTCCATTTAAGTGTACCTTT
TTTCAGGTGTAAGTTCTGCAGCCCCTTAACCACGGGATCGACCGCGTCAT
CGGTTGGATGAGTAGGGACGGATACACGGAGCCCCTGAGGAGAGACGTCG
GGAAGAAAAAAAAACACACACACACTTCGCGTCAAGACAGACGTTCGGGA
ACCACGAGTCGCGGGAATCAGGAAACAATAAAGGTGTCGGGGAGGGAATC
GCTCTCTCCCACCCAACTCTCTTAAACTCACTTTTGAGGCGCTTTTCTTA
TCCCCGAATTTTTGTATTTTCTTCAGCGGCGTCGAGTGTGTGCCCTATTC
TGTCACCACGGGGCCCCGCGGAGGTATCGGCCCGAAGTAGAGAAGACATG
TGAGGACCACACCACCAAAAAGAGCACCAACCGATAGCACCAATAATAAG
AACGACGACACCCTCCCCCCCCCCCACCCTCTCCCTGTCATCCAACGCAC
CACAGGAGCTCATGGCCAACGCCAAGCAGTACGGGGAAGGGGACAAGCTG
GCCCTCTACGGGCTGTTCAAGCAGGCCAAGTGGGGAGACTGCCCCGCCGG
CCTGGTGTCGGCGCAGAGGGACAACCCGGTGGGCTCGGTCAAGGTCCGCG
CGTGGGTGACGAATCGCGGGAAGCCCACTTCCCAGGCCATGGAGGAGTTT
ATCGCCGTGCTTGGAAGGGTAAGTGCACTCTTCTGGGACAAGCGGGGGGT
TACGCCGAAGTGGCGGTCGGGGGGGGGGGTTGTCGGCTGTTTTTATTTTT
TATTTTTTATTTTGAGGGTGTGTGTGTGTGTGTATTGTTTGGTCTTCAAA
GAAAAACAGTTATTGAATCAAAAATGGAACCTGACCCACATTGACCCGGA
ACTCCGTGAGATTCAATCTTCTTCTCTGAGTGCCCCCCCCCCCCCCCGAG
CTTTTTGGGTGTAACCGTAATCGTCTCTGATTTCCGGTTTTCCCCGGCGG
GCGGGGAACGAAATTTGCAGTCTCTTTTTCTATATGTAGCGGCGAGGGTG
CTATTTGTCGCCGAGCGATGCGCTGTTGTTTTTTCTTCTTTTTTTTCTCC
AGTGCTGGATGGGCTCCTTGCCACGCGGGGCATCTTGCCAGAGTATTGAC
CCGTGGTGGCACAGAAGAGCCCCTCTCCCCGAGGCCCCCCACTCCCACCT
TCTACGGTGCTTGCCTAAGATTTGTTATCGCGAGAAGGGTTCAGCCCGTC
CCTTTCCCTTTTGTCGACGGTGAGGTCGAAGACTGTGGCTCGCTAAATAA
ATGCGAATGAAGATTGTTCGTGCGCCGGCCTCTATTACAGTTGTGGTAGG
TAGATCCGTTACGTAAGTCCCTGCGGTGTTTGTTTAATTAATGTGTGTTG
TTCCTTCACATTTAAAACAGTTCCGATCTCTCCACCCAGTACTTCCCTAT
GGGCATACTATTCCAACACTTGATGCGGTCAATTCCCGTGGCCACAGGGT
AACTTACACCTAAAAAAGGAATACGAAAATAAAATGGACCCGAAGGGTCA
GCAAAGCGATAAAAATCAAAGATAAATACGTGTTTTTTGTGCATTTTTGA
GATGATGTGCATACATACACAGCTTTGACCCGCCATACATCTCTCGTCAC
GAAACCGCAGGTATCCCCCGGCTGGGAGTCACGAGTGTTGCGTCCGTCCA
GCAGCGACGGAGCCTCCACCCACCCGAAGACCACCGTGGCCGCCACCCGC
GGAACCCCCAGGCGTCCCTCCAGCACGTTCTCTTCCGCCAGCTCCACCAC
CCTGTCCTCCTCTCCTTCCGCCGCTACCGCTACCGCGGCGTCTACCGCTA
CCGCTGCTGCCGCTGCCGCCGCCGTCGCGGCGTCCCCTCTGGCGATGCCG
GCTTCTTCCGCGGAGGCGGTGGGGGGCGGTCCTCTACGCCCCCTCGCCCG
CGTGACGAGCGCCGGTTCTTCGGGGATGTCGTCGCCGGAGGAGCTCTCGC
GGTTGCCAGTTTCGCGCACGAACGGGGCGTCGGCGGCGCGGGGGCAGAAG
CACCACGGCAGACGGGGGGATGTAGGCACGGTCGTTCCCGCGAGCGGGTC
GGCAGCGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10392:575..3692-

>mRNA_L-elsbetiae_contig10392.404.1 ID=mRNA_L-elsbetiae_contig10392.404.1|Name=mRNA_L-elsbetiae_contig10392.404.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1998bp|location=Sequence derived from alignment at L-elsbetiae_contig10392:575..3692- (Laminarionema elsbetiae ELsaHSoW15)
ACCACCAAGTCTGCTGCCCCAACCGCCGCCGCAGCGGCCGCGGCGGACCA
CCAAGTCTGCTGCCCCAACCGCCGCCGCAGCGGCCGCGGCGGTAGCGGAG
GCGGCAGCGGCGGCGGCCGCGGCGGCGGTGGCGGCATCTGGCCAGGCGGC
CGAGGGGGCAGCCGGTGGTGCCGGCGGCGGTGTGAGAGGGGCGGGGGCGG
CCTCGTCGGGGGCGCGGGCCGGCGCCGGCGGCAAGGCGGCGTCCGGCGCC
GGGGCCGCGGCGGGAGCCGCGGCTGGAAGCAAGATACTGCTCGCGTCGTC
TGGCAGCTGGTCGGAGGCTCCGGACGACCAGGCGCTCACCAAAAAGTTCA
GGGTTTCCCTCATGTTCTACACCAAGTAGCGGAGGCGGCAGCGGCGGCGG
CCGCGGCGGCGGTGGCGGCATCTGGCCAGGCGGCCGAGGGGGCAGCCGGT
GGTGCCGGCGGCGGTGTGAGAGGGGCGGGGGCGGCCTCGTCGGGGGCGCG
GGCCGGCGCCGGCGGCAAGGCGGCGTCCGGCGCCGGGGCCGCGGCGGGAG
CCGCGGCTGGAAGCAAGATACTGCTCGCGTCGTCTGGCAGCTGGTCGGAG
GCTCCGGACGACCAGGCGCTCACCAAAAAGTTCAGGGTTTCCCTCATGTT
CTACACCAAGGAGCTCATGGCCAACGCCAAGCAGTACGGGGAAGGGGACA
AGCTGGCCCTCTACGGGCTGTTCAAGCAGGCCAAGTGGGGAGACTGCCCC
GCCGGCCTGGTGTCGGCGCAGAGGGACAACCCGGTGGGCTCGGTCAAGGT
CCGCGCGTGGGTGACGAATCGCGGGAAGCCCACTTCCCAGGCCATGGAGG
AGTTTATCGCCGTGCTTGGAAGGGAGCTCATGGCCAACGCCAAGCAGTAC
GGGGAAGGGGACAAGCTGGCCCTCTACGGGCTGTTCAAGCAGGCCAAGTG
GGGAGACTGCCCCGCCGGCCTGGTGTCGGCGCAGAGGGACAACCCGGTGG
GCTCGGTCAAGGTCCGCGCGTGGGTGACGAATCGCGGGAAGCCCACTTCC
CAGGCCATGGAGGAGTTTATCGCCGTGCTTGGAAGGGTATCCCCCGGCTG
GGAGTCACGAGTGTTGCGTCCGTCCAGCAGCGACGGAGCCTCCACCCACC
CGAAGACCACCGTGGCCGCCACCCGCGGAACCCCCAGGCGTCCCTCCAGC
ACGTTCTCTTCCGCCAGCTCCACCACCCTGTCCTCCTCTCCTTCCGCCGC
TACCGCTACCGCGGCGTCTACCGCTACCGCTGCTGCCGCTGCCGCCGCCG
TCGCGGCGTCCCCTCTGGCGATGCCGGCTTCTTCCGCGGAGGCGGTGGGG
GGCGGTCCTCTACGCCCCCTCGCCCGCGTGACGAGCGCCGGTTCTTCGGG
GATGTCGTCGCCGGAGGAGCTCTCGCGGTTGCCAGTTTCGCGCACGAACG
GGGCGTCGGCGGCGCGGGGGCAGAAGCACCACGGCAGACGGGGGGATGTA
GGCACGGTCGTTCCCGCGAGCGGGTCGGCAGCGGCGGCGGCGGTATCCCC
CGGCTGGGAGTCACGAGTGTTGCGTCCGTCCAGCAGCGACGGAGCCTCCA
CCCACCCGAAGACCACCGTGGCCGCCACCCGCGGAACCCCCAGGCGTCCC
TCCAGCACGTTCTCTTCCGCCAGCTCCACCACCCTGTCCTCCTCTCCTTC
CGCCGCTACCGCTACCGCGGCGTCTACCGCTACCGCTGCTGCCGCTGCCG
CCGCCGTCGCGGCGTCCCCTCTGGCGATGCCGGCTTCTTCCGCGGAGGCG
GTGGGGGGCGGTCCTCTACGCCCCCTCGCCCGCGTGACGAGCGCCGGTTC
TTCGGGGATGTCGTCGCCGGAGGAGCTCTCGCGGTTGCCAGTTTCGCGCA
CGAACGGGGCGTCGGCGGCGCGGGGGCAGAAGCACCACGGCAGACGGGGG
GATGTAGGCACGGTCGTTCCCGCGAGCGGGTCGGCAGCGGCGGCGGCG
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