mRNA_L-elsbetiae_contig15794.4035.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15794.4035.1
Unique NamemRNA_L-elsbetiae_contig15794.4035.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: D8LQ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ42_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.870e-24
Identity = 54/96 (56.25%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    1 ASELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDEGNI--AGLEACDDGS--SLDPDAEAG 276
            A+ELWAFSA+ILPWI+ CD AV   VR N+++   +APM DG+ A K +LE VYSCMGITCAQVGGL+D+        E CDDGS  S+D  +++G
Sbjct: 1402 AAELWAFSASILPWISACDAAVGTAVRDNTELGSASAPMADGYAAIKTQLETVYSCMGITCAQVGGLLDDTGAYYTDFEPCDDGSLASIDRSSDSG 1497          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: A0A6H5KYS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS6_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.950e-24
Identity = 51/86 (59.30%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 ASELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDEGNI--AGLEACDDGSS 252
            A+ELWAFSAAILPWI+ CD AV  TVR N+++   +APM DG+ A K +LE VYSCMGITCAQVGGL+D+        E CDD ++
Sbjct:   92 AAELWAFSAAILPWISACDAAVGTTVRDNTELGSASAPMADGYAAIKVQLESVYSCMGITCAQVGGLLDDTGAYYTDFEPCDDSTT 177          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: D8LFX4_ECTSI (Probable high CO2 inducible periplasmic protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFX4_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 3.330e-19
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1
Query:    1 ASELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDEGNIA---GLEACDDGSS 252
            A+ELWAFSAA+LP I ECD  VA  VRAN+D++   APM++G+V  K +LE VYSCMGI+C+QVGGL+   +     G E C D  S
Sbjct:  293 AAELWAFSAAMLPRINECDEEVATLVRANTDIASADAPMSEGYVFLKEQLESVYSCMGISCSQVGGLVIGESTTYYDGFEPCGDSDS 379          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: D8LDE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.620e-18
Identity = 46/82 (56.10%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDEGN----IAGLEAC 237
            +ELWAF+AAILP I EC   VA TVR+NSD+    AP++ GFVA K ELE +YSC+G+TC QVGGL+   +    + GLE C
Sbjct:  656 AELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGFVAVKEELESIYSCLGMTCDQVGGLLAGDSTTDYVPGLEPC 737          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: A0A7S2V1S6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1S6_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.030e-17
Identity = 46/83 (55.42%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDEGN---IAGLEACDD 243
            +ELWAFSAA+LP IAECD  VA  +R NS + K   PM DG+VA K  LE  YSC+G  C+ VGG+ID G    I+G+E C+D
Sbjct:  524 AELWAFSAAVLPRIAECDSGVASMLRENSYIGKD--PMKDGYVAVKEALETTYSCLGFMCSDVGGIIDGGAGNYISGMEPCED 604          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: D8LDE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDE2_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.570e-17
Identity = 40/67 (59.70%), Postives = 50/67 (74.63%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLI 204
            +ELWAF+AAILP I EC   VA TVR+NSD+    AP++ G VA K ELE +YSC+G+TC QV GL+
Sbjct:  119 AELWAFAAAILPLIDECSADVAHTVRSNSDIDSEHAPVSAGLVAVKKELESIYSCLGMTCDQVVGLL 185          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: A0A7S2XA87_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XA87_9EUKA)

HSP 1 Score: 80.5 bits (197), Expect = 9.650e-16
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLID--EGNIAGLEACDDGSS 252
            +E WAF+ A+LP I  C+P VA  +R N     P  PM DG+   K + E VYSCMGITC  VGGL++  EG   G+E C D SS
Sbjct:  282 AEGWAFAIAVLPQINRCNPTVAAEIRENLQYPNPQGPMVDGYRYVKQQFESVYSCMGITCDSVGGLLNGNEGYFDGMEPCRDPSS 366          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: A0A7S1TU13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU13_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 3.990e-14
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLI---DEGNI---AGLEACDD 243
            +E WAF++A+LP I  CD  VA  +RAN +     +P+ DG+ A  AE++KVYSC+GITCA VGG +    +G I   +G E CDD
Sbjct:  207 AEGWAFTSAVLPQIDACDAGVASMIRANMEYGV-ASPVADGYAAVYAEMQKVYSCLGITCADVGGYVASVTDGTITYVSGTEPCDD 291          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: A0A7S3JU19_9STRA (Hypothetical protein n=3 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU19_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 7.860e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRAN----SDMSKPTAPMTDGFVAAKAELEKVYSCMGITCAQVGGLIDE--GNIAGLEACDDGSSLDPDA 267
            +E  AF+ AILP +A CD   A  + AN    SD++     + DGF A K+  E  YSC+ ITC+ +GGL D   G I+G+E+C+DGSS++ D+
Sbjct:  560 AEFVAFAEAILPRVAHCDANAAAVIAANTVIPSDLNN---AIPDGFAAVKSAFESTYSCLSITCSDIGGLSDGNGGFISGMESCEDGSSVEDDS 650          
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Match: F0XWA3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWA3_AURAN)

HSP 1 Score: 72.4 bits (176), Expect = 7.920e-13
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    4 SELWAFSAAILPWIAECDPAVAETVRAN----SDMSKPTAP--MTDGFVAAKAELEKVYSCMGITCAQVGG-LIDEGN-IAGLEACDDGSSLDPDAE 270
            +E  AF+ A LP +A CD A  E + A+    +++++ +A   +  GF A KA LE  YSC+GITCA VGG LI +G  +AG+EACDDGS+++  AE
Sbjct: 1061 AEYHAFAYAALPRVAHCDAAAGEVLAASMAIPTELTEASAATVVPGGFAAVKAALESTYSCLGITCADVGGPLIHDGAPVAGMEACDDGSTVNTRAE 1157          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15794.4035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ42_ECTSI1.870e-2456.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYS6_9PHAE5.950e-2459.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFX4_ECTSI3.330e-1955.17Probable high CO2 inducible periplasmic protein n=... [more]
D8LDE3_ECTSI1.620e-1856.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2V1S6_9STRA1.030e-1755.42Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D8LDE2_ECTSI3.570e-1759.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XA87_9EUKA9.650e-1649.41Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S1TU13_9STRA3.990e-1447.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3JU19_9STRA7.860e-1343.62Hypothetical protein n=3 Tax=Aureoumbra lagunensis... [more]
F0XWA3_AURAN7.920e-1346.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15794contigL-elsbetiae_contig15794:829..1104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.8
Seed ortholog evalue8.6e-20
Seed eggNOG ortholog2880.D8LQ42
Hectar predicted targeting categorysignal peptide
EggNOG OGs29F58@1,2RNAK@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815648.5535474-CDS-L-elsbetiae_contig15794:828..11041622815648.5535474-CDS-L-elsbetiae_contig15794:828..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15794 829..1104 +
1691683013.3535712-CDS-L-elsbetiae_contig15794:828..11041691683013.3535712-CDS-L-elsbetiae_contig15794:828..1104Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15794 829..1104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15794.4035.1prot_L-elsbetiae_contig15794.4035.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15794 829..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15794.4035.1

>prot_L-elsbetiae_contig15794.4035.1 ID=prot_L-elsbetiae_contig15794.4035.1|Name=mRNA_L-elsbetiae_contig15794.4035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
ASELWAFSAAILPWIAECDPAVAETVRANSDMSKPTAPMTDGFVAAKAEL
EKVYSCMGITCAQVGGLIDEGNIAGLEACDDGSSLDPDAEAG
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mRNA from alignment at L-elsbetiae_contig15794:829..1104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15794.4035.1 ID=mRNA_L-elsbetiae_contig15794.4035.1|Name=mRNA_L-elsbetiae_contig15794.4035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=276bp|location=Sequence derived from alignment at L-elsbetiae_contig15794:829..1104+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCCGAGCTTTGGGCCTTCTCCGCTGCGATCCTCCCCTGGATCGCCGA GTGCGACCCCGCCGTCGCGGAGACGGTGCGTGCCAACTCGGACATGTCTA AGCCAACCGCGCCCATGACCGACGGCTTCGTTGCGGCGAAGGCGGAGCTC GAGAAGGTGTACTCCTGCATGGGCATTACGTGCGCCCAGGTCGGTGGCCT GATCGACGAGGGCAACATCGCGGGCCTCGAGGCGTGCGATGACGGCAGCT CCCTCGACCCCGATGCCGAGGCGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15794:829..1104+

>mRNA_L-elsbetiae_contig15794.4035.1 ID=mRNA_L-elsbetiae_contig15794.4035.1|Name=mRNA_L-elsbetiae_contig15794.4035.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig15794:829..1104+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTCCGAGCTTTGGGCCTTCTCCGCTGCGATCCTCCCCTGGATCGCCGA
GTGCGACCCCGCCGTCGCGGAGACGGTGCGTGCCAACTCGGACATGTCTA
AGCCAACCGCGCCCATGACCGACGGCTTCGTTGCGGCGAAGGCGGAGCTC
GAGAAGGTGTACTCCTGCATGGGCATTACGTGCGCCCAGGTCGGTGGCCT
GATCGACGAGGGCAACATCGCGGGCCTCGAGGCGTGCGATGACGGCAGCT
CCCTCGACCCCGATGCCGAGGCGGGAGCCTCCGAGCTTTGGGCCTTCTCC
GCTGCGATCCTCCCCTGGATCGCCGAGTGCGACCCCGCCGTCGCGGAGAC
GGTGCGTGCCAACTCGGACATGTCTAAGCCAACCGCGCCCATGACCGACG
GCTTCGTTGCGGCGAAGGCGGAGCTCGAGAAGGTGTACTCCTGCATGGGC
ATTACGTGCGCCCAGGTCGGTGGCCTGATCGACGAGGGCAACATCGCGGG
CCTCGAGGCGTGCGATGACGGCAGCTCCCTCGACCCCGATGCCGAGGCGG
GA
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