mRNA_L-elsbetiae_contig15765.4022.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15765.4022.1
Unique NamemRNA_L-elsbetiae_contig15765.4022.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: D7FYA9_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA9_ECTSI)

HSP 1 Score: 218 bits (555), Expect = 1.060e-67
Identity = 107/121 (88.43%), Postives = 117/121 (96.69%), Query Frame = 1
Query:   79 MCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            MCPRLGDAYARSEAVLDVRADV+FSRLRKV K+GLETLDASGGRLGFLP+EIRERPEMACLT++NLSRNQLFNSDHVFGIL  L++L+KLDLTDNFFNGVLSA AG+LRELEELRLDVNQ+
Sbjct:    1 MCPRLGDAYARSEAVLDVRADVVFSRLRKVVKYGLETLDASGGRLGFLPDEIRERPEMACLTNLNLSRNQLFNSDHVFGILLGLKNLKKLDLTDNFFNGVLSAAAGRLRELEELRLDVNQI 121          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: A0A7S3YCW6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCW6_HETAK)

HSP 1 Score: 152 bits (384), Expect = 1.370e-41
Identity = 73/136 (53.68%), Postives = 98/136 (72.06%), Query Frame = 1
Query:   34 VVVTTRFIEAERLRCMCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            V  TT +I AER R MCPRLGD Y R +   +++ DV+  ++ K A +G  TLD SGG LGFLP+E+R RPE+  +T++NL++NQLFNSDHVFG++S LE +R L+L+DNF NG LS + G    + ELRLD NQ+
Sbjct:   21 VPTTTPYIVAERERAMCPRLGDNYVRVQNSDEIKKDVVQWKIEKAAMNGASTLDISGGNLGFLPQELRTRPELQSITEINLAKNQLFNSDHVFGVVSALERIRVLNLSDNFLNGQLSDSVGLCISIRELRLDSNQL 156          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: A0A836C9T9_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9T9_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.720e-36
Identity = 67/121 (55.37%), Postives = 86/121 (71.07%), Query Frame = 1
Query:   79 MCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            MCPRLGD Y   +A  +VRAD +F RLR+      +TL  + G LG LP+EIR RPE+  L +++LSRNQLFNS+ VFG+L  LE L+KLDL+DNFFNGVLS  AG L +L+ + LD N +
Sbjct:    1 MCPRLGDVYKNEQAADEVRADRMFFRLRRAIHESTDTLSLANGNLGSLPDEIRTRPELQNLKELDLSRNQLFNSNQVFGVLQSLEQLQKLDLSDNFFNGVLSPAAGLLTQLQNISLDNNHI 121          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: F0Y819_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y819_AURAN)

HSP 1 Score: 133 bits (334), Expect = 2.680e-34
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 1
Query:   37 VVTTRFIEAERLRCMCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            VVTTR I  ER RCMCPRLGDA  RSE    +R + +F ++R+    G ETLD S   LGF+PEE+R  PE+  LT+++LSRNQLF SDHVF             L+DNFFNG LS    K+  LE+L LD NQ+
Sbjct:   21 VVTTRTIIRERERCMCPRLGDAAVRSERADAIRLECVFFKIRRAVVQGKETLDLSRSNLGFVPEELRTVPELRKLTELDLSRNQLFGSDHVFSXXXXXXXXXXXXLSDNFFNGPLSERCTKMVALEDLALDGNQL 155          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: A0A8J2SS54_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SS54_9STRA)

HSP 1 Score: 128 bits (321), Expect = 2.160e-32
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    4 KKGKKSAPERVVVTTRFIEAERLRCMCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            KKGK  A    +VTTR +  ER RCMCPRLGDA  R E   +++ + + +R++KV +   + LD S   LGF+P+E+   P +  L  V+LSRNQLF+SDHVF  L  + SL+ L+L  NF NG L+  A  +  LEEL LD NQ+
Sbjct:    6 KKGKGGADADAIVTTRAMLVERERCMCPRLGDAIERRERANEIKRECVQARIKKVGEFKRDYLDMSASGLGFVPDEVPRSPSLTRLVRVDLSRNQLFSSDHVFQSLEHITSLKILNLAHNFLNGPLTGRATDVTSLEELYLDHNQL 151          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: A0A7S1U9P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9P1_9STRA)

HSP 1 Score: 121 bits (303), Expect = 7.940e-30
Identity = 68/147 (46.26%), Postives = 92/147 (62.59%), Query Frame = 1
Query:    1 KKKGKKSAPERVVVTTRFIEAERLRCMCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            K KGK +AP   ++TT  I   R  C+CPRLGD+    E   D R DVI+ R+ K A+ G   L+ S   L FLPE+I   PE+  +  ++LS N+LFNSDHVF IL+ L  L+KL+L+ N  +G LS  A ++  LEELRLD N++
Sbjct:    3 KGKGKAAAP---ILTTPAIIKARQTCLCPRLGDSLRNMEIADDCRMDVIYWRMNKAAERGHNALNLSHAALDFLPEDIIHIPELVGVVSLDLSYNRLFNSDHVFEILTHLPLLKKLNLSHNRLHGALSVAACRIETLEELRLDSNEL 146          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: A0A7S2S4U1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4U1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.160e-10
Identity = 53/158 (33.54%), Postives = 77/158 (48.73%), Query Frame = 1
Query:    7 KGKKSAPERVVVTTRFIEAER---LRCMCPRLGDAYARSEAVLDVRADVIFSRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMAC---------LTDVNLSRNQLFNSDHVFGILSCLE-SLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQV 441
            KG  +  + VV+ T   +A     ++  C  LG  Y+      ++R +V  SRLR V     E LD  G  LG +PEE+     +           LT ++LS+N L  +DHVF  L+CL  +L KL+++ N  +G L  TA  L  LEEL    N +
Sbjct:   28 KGSAAELDPVVIVTSAQQARERSHIQRECIPLGRRYSVLCRAQEIRREVAESRLRAVYSRSAECLDLRGLDLGHVPEELAALSRLEADIEPAGWNGLTALDLSKNSLNTTDHVFQALACLGGTLLKLNVSANELSGPLPDTARALTHLEELDASRNHI 185          
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Match: F0YRJ7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRJ7_AURAN)

HSP 1 Score: 53.9 bits (128), Expect = 1.150e-5
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:  190 LDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNSDHVFGILSCLESL 339
            LD S   LGF+PEE+R  PE+  LT+++LSRNQLF SDH    +  LE L
Sbjct:    1 LDLSRSNLGFVPEELRTVPELRKLTELDLSRNQLFGSDHRCTKMVALEDL 50          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15765.4022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FYA9_ECTSI1.060e-6788.43Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7S3YCW6_HETAK1.370e-4153.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A836C9T9_9STRA2.720e-3655.37Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
F0Y819_AURAN2.680e-3451.85Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SS54_9STRA2.160e-3246.58Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U9P1_9STRA7.940e-3046.26Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2S4U1_9STRA2.160e-1033.54Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0YRJ7_AURAN1.150e-554.00Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15765contigL-elsbetiae_contig15765:2321..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score217.6
Seed ortholog evalue3.9e-54
Seed eggNOG ortholog2880.D7FYA9
KEGG koko:K19613
KEGG Pathwayko04014,map04014
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-24_003160.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons3
Model size447
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15765.4022.1prot_L-elsbetiae_contig15765.4022.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15765 2321..3648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.4630454-CDS-L-elsbetiae_contig15765:2320..24851622815647.4630454-CDS-L-elsbetiae_contig15765:2320..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 2321..2485 +
1691683012.6351075-CDS-L-elsbetiae_contig15765:2320..24851691683012.6351075-CDS-L-elsbetiae_contig15765:2320..2485Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 2321..2485 +
1622815647.4741485-CDS-L-elsbetiae_contig15765:2783..29591622815647.4741485-CDS-L-elsbetiae_contig15765:2783..2959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 2784..2959 +
1691683012.6495519-CDS-L-elsbetiae_contig15765:2783..29591691683012.6495519-CDS-L-elsbetiae_contig15765:2783..2959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 2784..2959 +
1622815647.4879632-CDS-L-elsbetiae_contig15765:3542..36481622815647.4879632-CDS-L-elsbetiae_contig15765:3542..3648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 3543..3648 +
1691683012.6586068-CDS-L-elsbetiae_contig15765:3542..36481691683012.6586068-CDS-L-elsbetiae_contig15765:3542..3648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15765 3543..3648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15765.4022.1

>prot_L-elsbetiae_contig15765.4022.1 ID=prot_L-elsbetiae_contig15765.4022.1|Name=mRNA_L-elsbetiae_contig15765.4022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
KKKGKKSAPERVVVTTRFIEAERLRCMCPRLGDAYARSEAVLDVRADVIF
SRLRKVAKHGLETLDASGGRLGFLPEEIRERPEMACLTDVNLSRNQLFNS
DHVFGILSCLESLRKLDLTDNFFNGVLSATAGKLRELEELRLDVNQVG*
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mRNA from alignment at L-elsbetiae_contig15765:2321..3648+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15765.4022.1 ID=mRNA_L-elsbetiae_contig15765.4022.1|Name=mRNA_L-elsbetiae_contig15765.4022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1328bp|location=Sequence derived from alignment at L-elsbetiae_contig15765:2321..3648+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGAAGGGCAAAAAGTCTGCCCCGGAGCGAGTCGTGGTCACAACACG CTTTATCGAGGCCGAGCGGTTACGCTGCATGTGTCCCCGCCTGGGCGACG CCTACGCCCGGTCAGAAGCCGTTCTGGATGTGCGGGCCGACGTCATCTTC AGCCGCTTGAGAAAGGTGGGAATTTCGGGATATCAACCATTCAAGCTACT GTAGTTCTTCGAACCCTGCTCGCGATAAAACACTTAAGGCGGGCCACCGC AGGAGGGCCCCTCCTGTACGACCCCGGTTAGATCGTCTAGCTAGTCGTAG TGGAGGAAGGGGGCCAGTGGAGCAGACGACGATTATGCCAATAATGGGAG GGAAAGAAAAGCTCATCGCCGAGCTTTCGGTTCAGAACGTATGTGATGCG CCCGCCCGGGATCTGGTGCCTGACAAGTGACATAGCACTTTCAACTCTTG AACAAACATTCAGGTGGCGAAGCACGGCTTGGAAACGCTGGATGCCTCGG GCGGCAGGCTAGGTTTCTTGCCAGAGGAAATACGCGAAAGACCGGAGATG GCTTGCCTCACGGATGTCAACCTCAGCCGAAATCAGCTCTTTAACAGTGA TCACGTCTTCGGCATCCTTTCATGCCTCGAAAGCCTCAGGTGAGAACGCT GCACAGATCGCGTGCTTGCGTCAAGCCAGAGACGGGGGCGAGGGAGGCAC AGGGAAGACCCAGAGACTCGCTCCTGTCAGAACTTCATTGTTGACGAGGA TGGGGAGTGCTGAACCCTGCTCGCGATACAAGCATCACAGGCAGGCACCG CAGGAGTGGGTCTCAACCTCCCCCCCTCCCCCCTCCTGTGTGACCCCGGT TGGGTCGTGTAGCCAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCAGACG ACGAATAAGCCAATAATGGGAAGAAGAAAAAAAAGAATAAAAGAAAAGGC GGGGTCCTGTTGGGTGCTATTCACCATCGCCGCGCTCTCTCGTGCCTCCT TCCTGCCTGCCCTCTTGCGTATGCAGCTCTGCACTTGATGTGTGAGGCGT GTGACACAGGATAAGTAGCCGAAGATCACGGTCGTCGGGTTGCCAACTTT GTAATAGTCTAGACTACATATTCTGTTCTGATGACACGGCAGGCAGCAGT GGCACGTCTCCTCGGACGAGGCGTCCGACCAAGCCCAGAACTTCCATGAA CTGAACTGAAAATCCGAAGCAGGAAGCTGGATCTGACCGACAACTTCTTC AATGGAGTCTTGTCGGCGACGGCCGGAAAGCTGCGGGAGCTGGAAGAGCT ACGGCTGGATGTTAACCAGGTCGGCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15765:2321..3648+

>mRNA_L-elsbetiae_contig15765.4022.1 ID=mRNA_L-elsbetiae_contig15765.4022.1|Name=mRNA_L-elsbetiae_contig15765.4022.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig15765:2321..3648+ (Laminarionema elsbetiae ELsaHSoW15)
AAGAAGAAGGGCAAAAAGTCTGCCCCGGAGCGAGTCGTGGTCACAACACG
CTTTATCGAGGCCGAGCGGTTACGCTGCATGTGTCCCCGCCTGGGCGACG
CCTACGCCCGGTCAGAAGCCGTTCTGGATGTGCGGGCCGACGTCATCTTC
AGCCGCTTGAGAAAGAAGAAGAAGGGCAAAAAGTCTGCCCCGGAGCGAGT
CGTGGTCACAACACGCTTTATCGAGGCCGAGCGGTTACGCTGCATGTGTC
CCCGCCTGGGCGACGCCTACGCCCGGTCAGAAGCCGTTCTGGATGTGCGG
GCCGACGTCATCTTCAGCCGCTTGAGAAAGGTGGCGAAGCACGGCTTGGA
AACGCTGGATGCCTCGGGCGGCAGGCTAGGTTTCTTGCCAGAGGAAATAC
GCGAAAGACCGGAGATGGCTTGCCTCACGGATGTCAACCTCAGCCGAAAT
CAGCTCTTTAACAGTGATCACGTCTTCGGCATCCTTTCATGCCTCGAAAG
CCTCAGGTGGCGAAGCACGGCTTGGAAACGCTGGATGCCTCGGGCGGCAG
GCTAGGTTTCTTGCCAGAGGAAATACGCGAAAGACCGGAGATGGCTTGCC
TCACGGATGTCAACCTCAGCCGAAATCAGCTCTTTAACAGTGATCACGTC
TTCGGCATCCTTTCATGCCTCGAAAGCCTCAGGAAGCTGGATCTGACCGA
CAACTTCTTCAATGGAGTCTTGTCGGCGACGGCCGGAAAGCTGCGGGAGC
TGGAAGAGCTACGGCTGGATGTTAACCAGGTCGGCTAGGAAGCTGGATCT
GACCGACAACTTCTTCAATGGAGTCTTGTCGGCGACGGCCGGAAAGCTGC
GGGAGCTGGAAGAGCTACGGCTGGATGTTAACCAGGTCGGCTAG
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