mRNA_L-elsbetiae_contig1576.4018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI) HSP 1 Score: 557 bits (1436), Expect = 5.110e-191 Identity = 324/506 (64.03%), Postives = 372/506 (73.52%), Query Frame = 2 Query: 11 LALQAALESSWRALSAWTAVITLFLSPVLQFLAVLTRAVWPHAQGAATALWRYQASLPPSTLLAEAAAVAFVVAAFLLRRFIVRRRYLPRAQRRVRLLRARLNRGYASFTAAVERNFRLSARAFPHVAYWTAAGSFAWLAPGAAGWLRENLSVFVTATWPTLYALYLTLLLRSQD--------NGAASNGE----GXXXXXXXXXXXXXXXXXXXXXXXASRRTPVRTPVARTPTPGAGTPARSPGSALGRGARVTPQDVDWVLMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVV 1492 LA QAA E+SW +LSAW +V+TLFLSPVLQFLAVL RAVWPHAQ AA + +YQASLP STL AEAAAV +A LLRRFIVR+RY+PRA+RRVR RAR+N Y SFTA+VERN RLSARAFPHV YWTAA SFAWLAP G LR+ VF TATWPTLYA+YL LL+RSQ+ G++ NG G XXXXXXXXXXXXXXXXX AR S L RGA V PQDVD VLMYWVVFTV + L A+ E F P+VR+VAFFLALW+HLPGPGSGL VVYA LEPLVH YV+DLR PQNGY+ T+++ QDL V VRL+T+E AELL DN+TDSWMLVP L F TPSF+T + C+YAGLV+PS NSIKTLGR + S ++S WAALAT+A SARVRWLTYWVA+G WWH+S LGG+LR+LP HA+LALLLWLQVP+FRGGGRILDFGERC++RW G+ V Sbjct: 42 LAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDSAGGSSVNGTPAGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR--------------SGLARGAGVMPQDVDRVLMYWVVFTVARCWGLL--AAYVPETFFTPYVRTVAFFLALWMHLPGPGSGLQVVYAWLEPLVHTYVKDLRMPQNGYTGTLKRVQDLLVLVRLLTEEKAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTLGRRSNTS-----AVSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPLFRGGGRILDFGERCMDRWTFGSDV 526
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA) HSP 1 Score: 226 bits (577), Expect = 8.780e-62 Identity = 167/526 (31.75%), Postives = 248/526 (47.15%), Query Frame = 2 Query: 38 SWRALSAWTAVITLFLSPVLQFLAVLTRAVWPHAQGAATALWRYQASLPPSTLLAEAAAVAFVVAAFLLRRFIVRRRYLPRAQRRVRLLRARLNRGYASFTAA-------VERNFRLSARAFPHVAYWTAAGSFAWLAPGAAGWLRENLS-VFVTATWPTLYALYLTL-LLRSQDNGAASNGEGXXXXXXXXXXXXXXXXXXXXXXXASRRTPVRTPVARTPTPGAGTPARSPGSALGRGARVTPQD------VDWVLMYWVVFTVVK----VVSLFPFASTAVEIFGKPF---VRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFV--RLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVVDASADAETETIDTPRRT 1543 +W++L W + L L P + + +WP + A L R+Q + + +L EAA + VVA LLRR+++R R LPRAQ + RA + + + S AA V + +L+A+ PH+ YW A + A L P L + FVT WP L + L RS + +A+ EG R +R A TP+ A + A+ ++ VD LMYW+VF + + V+ L P V G + +R +W+ LPG G+H+ YAL+EPL+H+Y+R +R P G A + L+ V R++++E A ++ +N+ DSWML+P L F+P F+ GC+YAGL+VP++NS K L ++ + + AR RWLTYW FG++W+ L LL LPF HAQLALLLWLQ+P+FRG +L E L ++ G A A RT Sbjct: 95 TWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTTIMLARGRKRSGASPSAALDEGVK---------------------GGARPSIR---AGTPSGKGKRGAXXXXXXXXQVAKPKGEEEPGGRNVDEALMYWIVFALAQCCAYVLGLVPGVGRLVLSTGTGWGLQLRMWTMLAGIWLQLPGSAGGIHMAYALIEPLIHEYIRAVRPP-GGADAVARSKNGLSFLVTLRILSQERASMIAENIADSWMLLPTPLLVFSPGFVVRGGCMYAGLLVPAINSAKALAHRNTL--------------IDNSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLPVFRGSYYVLAKIESALVAFSLGGTASPGAAARARGFFPASRT 581
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE) HSP 1 Score: 135 bits (341), Expect = 8.190e-34 Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 2 Query: 1163 LVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVV 1492 L+ P KTLGR + N ++S WAALAT+A ARVRWLTYWVA+G WWH+S +GG+LR+LP HA+LALLLWLQVP+FRGG RILDFGERC++RW G+ V Sbjct: 21 LLAPIAALSKTLGRRSN-----NSAVSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPLFRGGDRILDFGERCMDRWTFGSDV 125
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S2V8D4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D4_9STRA) HSP 1 Score: 116 bits (290), Expect = 3.150e-25 Identity = 85/275 (30.91%), Postives = 133/275 (48.36%), Query Frame = 2 Query: 764 LMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVVDASADAETETIDTPRRTPQSQPEQ*IIPPGGK 1588 LMYWV+F V+ + +++ A + P + FF +W+ LP G+ +++ LEPL+ KY++D++ P + + +AV + L++KE L N+ DSW+LVP LL PS T +YAG VP+ NSIK+L + + RWL YW+ + +W V L L +PF+ H L L++WLQ+P FRG RI+ + + R V D ++ T I P++T S +Q P K Sbjct: 11 LMYWVLFAAF-VLCNYLWSTFAWRLPQMPCGAEMVFFFFVWMQLPF--GGVSILFHQLEPLIRKYIKDIKRPIGKEESL--GYLKVAVTLGLISKERGHALVSNLLDSWLLVPALLGLTMPSPFTYAFSLYAGAAVPAFNSIKSLKAEQEGPN--------------------QERWLRYWMCYAPFWVVHLALDSHLWFVPFLYHFWLLLVMWLQLPYFRGAQRIV----QTVGREINALVEDFNSRRPTTPI-APKKTLGSDCQQDKSTPSSK 255
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S2R5J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J1_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 1.590e-12 Identity = 78/284 (27.46%), Postives = 124/284 (43.66%), Query Frame = 2 Query: 764 LMYWVVFTVV----KVVSLFPFASTAVEIFG-KPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWW--HVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGG-----------GRILDFG-----ERCLERWAQGAVVDASADAETETI-DTPRRT 1543 LM+WVVF V ++ FP S F +VR+ F +W+ LP GL + Y + P V + V P + I + V+ ++++E + + + D W+L+ L F+ F+T +GC+ AGL P++ S K LG A + ++VRWL YW + V + +S + G+ R + F H L +++LQ+P FRG ++LD +R L AQ V D AE + +PRRT Sbjct: 261 LMFWVVFAFVIAFHRLTVGFPLVSRIASFFTYHRWVRASYAFFLIWLQLPI--GGLQLAYDFIVPAVEQRVGQFSTPVSSEQRNIVF--RMLVYTGVLSQETSLRIQEVSRDGWILL-ALAFLFSAGFMTEVGCLLAGLCYPAMCSAKLLG-----------------AVMERVFIESQVRWLKYWAVYAVTFCFGLSIEAAGIWRWVLFGNHVHLVFIVYLQLPYFRGALLLYDKTKMALSQLLDLSPTVDQDRALHAGAQ-FVEDQDQAAERRRLPQSPRRT 521
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S3LQR1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQR1_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 4.440e-11 Identity = 72/257 (28.02%), Postives = 103/257 (40.08%), Query Frame = 2 Query: 746 QDVDWVLMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNV--TDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDE------------------WAALATAAKSAR-VRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFG 1453 Q V + L YW + +V V P + + P + +LW+ +PG SG + + + PLV KY + + P G S+T Q + VF +L E V T +L L F PS T IGCV GL P + I + + A S++ + + AA + +WL YWV + + V L PF QL L+LWLQ+P FRG RI G Sbjct: 398 QSVLYWLRYWTILSVALVGEQLPIIGHIIRLL--PVWPAARLIFSLWLQVPGT-SGADLAFEFVVPLVAKYWKRIDLP--GPSSTTQNFALNMVFSQLPVSEETRTKMTEVAETGGTLLFTTLPLLFMPSIFTTIGCVVVGLGKPMYSGIVAVLAVEKAAQKARRSLNKKDNRNKRSSVNRLLRHVPGGGDMGVAAAALHCTQWLEYWVVYTSFMFVHGLASVFLFWFPFWVQMQLLLILWLQLPYFRGSRRIFKTG 649
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: R1BSC6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BSC6_EMIHU) HSP 1 Score: 65.5 bits (158), Expect = 1.390e-7 Identity = 68/229 (29.69%), Postives = 102/229 (44.54%), Query Frame = 2 Query: 764 LMYWVVFTVVKVVS----LFPFASTAVEI----FGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFR 1426 LM+WV++ +++S L PFA+ + P V F A W+HLP SGL ++Y+L+ P++ +A Q+ D + L + W+L+ LC TP +T +Y + P+L S++ L R + AA A AA + +V+ L YW+ V QL LL LPF TH QL L +WLQ+P FR Sbjct: 210 LMFWVLWASAQLLSEALALLPFAARLLPAQALSLDSPSAAPVLFCAAAWLHLPH--SGLPLLYSLVGPVL--------------AARAQRLSDALPALPAGVSAQIGL------EGWLLLAAALCLCTPYPLTAYTLLYWSVCHPALRSVEALEAQRHGAEAA-----------ADAAFATQVQ-LRYWLLHCAVSAVLQQLPWLLW-LPFSTHGQLVLAVWLQLPYFR 403 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1576.4018.1 >prot_L-elsbetiae_contig1576.4018.1 ID=prot_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp ELRLSTPGGVGVFLACPVGVDGSHNALPLARPAVPGRPYAGGVAPRPGRGback to top mRNA from alignment at L-elsbetiae_contig1576:2..3361- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1576.4018.1 ID=mRNA_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3360bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:2..3361- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1576:2..3361- >mRNA_L-elsbetiae_contig1576.4018.1 ID=mRNA_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:2..3361- (Laminarionema elsbetiae ELsaHSoW15)back to top |