mRNA_L-elsbetiae_contig1576.4018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1576.4018.1
Unique NamemRNA_L-elsbetiae_contig1576.4018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: D8LF13_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF13_ECTSI)

HSP 1 Score: 557 bits (1436), Expect = 5.110e-191
Identity = 324/506 (64.03%), Postives = 372/506 (73.52%), Query Frame = 2
Query:   11 LALQAALESSWRALSAWTAVITLFLSPVLQFLAVLTRAVWPHAQGAATALWRYQASLPPSTLLAEAAAVAFVVAAFLLRRFIVRRRYLPRAQRRVRLLRARLNRGYASFTAAVERNFRLSARAFPHVAYWTAAGSFAWLAPGAAGWLRENLSVFVTATWPTLYALYLTLLLRSQD--------NGAASNGE----GXXXXXXXXXXXXXXXXXXXXXXXASRRTPVRTPVARTPTPGAGTPARSPGSALGRGARVTPQDVDWVLMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVV 1492
            LA QAA E+SW +LSAW +V+TLFLSPVLQFLAVL RAVWPHAQ AA  + +YQASLP STL AEAAAV   +A  LLRRFIVR+RY+PRA+RRVR  RAR+N  Y SFTA+VERN RLSARAFPHV YWTAA SFAWLAP   G LR+   VF TATWPTLYA+YL LL+RSQ+         G++ NG     G      XXXXXXXXXXXXXXXXX           AR              S L RGA V PQDVD VLMYWVVFTV +   L   A+   E F  P+VR+VAFFLALW+HLPGPGSGL VVYA LEPLVH YV+DLR PQNGY+ T+++ QDL V VRL+T+E AELL DN+TDSWMLVP L  F TPSF+T + C+YAGLV+PS NSIKTLGR  + S     ++S  WAALAT+A SARVRWLTYWVA+G WWH+S  LGG+LR+LP   HA+LALLLWLQVP+FRGGGRILDFGERC++RW  G+ V
Sbjct:   42 LAFQAAFETSWHSLSAWFSVLTLFLSPVLQFLAVLARAVWPHAQTAAITVCKYQASLPASTLCAEAAAVVLFIALVLLRRFIVRQRYIPRARRRVRNFRARINTAYMSFTASVERNLRLSARAFPHVVYWTAAASFAWLAPDLTGSLRDKFWVFATATWPTLYAVYLVLLVRSQNAVNDEDSAGGSSVNGTPAGAGTRGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXAR--------------SGLARGAGVMPQDVDRVLMYWVVFTVARCWGLL--AAYVPETFFTPYVRTVAFFLALWMHLPGPGSGLQVVYAWLEPLVHTYVKDLRMPQNGYTGTLKRVQDLLVLVRLLTEEKAELLVDNITDSWMLVPALAFFLTPSFMTELACLYAGLVIPSFNSIKTLGRRSNTS-----AVSTAWAALATSADSARVRWLTYWVAYGSWWHLSLCLGGILRVLPLAAHAELALLLWLQVPLFRGGGRILDFGERCMDRWTFGSDV 526          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A835ZEP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP2_9STRA)

HSP 1 Score: 226 bits (577), Expect = 8.780e-62
Identity = 167/526 (31.75%), Postives = 248/526 (47.15%), Query Frame = 2
Query:   38 SWRALSAWTAVITLFLSPVLQFLAVLTRAVWPHAQGAATALWRYQASLPPSTLLAEAAAVAFVVAAFLLRRFIVRRRYLPRAQRRVRLLRARLNRGYASFTAA-------VERNFRLSARAFPHVAYWTAAGSFAWLAPGAAGWLRENLS-VFVTATWPTLYALYLTL-LLRSQDNGAASNGEGXXXXXXXXXXXXXXXXXXXXXXXASRRTPVRTPVARTPTPGAGTPARSPGSALGRGARVTPQD------VDWVLMYWVVFTVVK----VVSLFPFASTAVEIFGKPF---VRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFV--RLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVVDASADAETETIDTPRRT 1543
            +W++L  W  +  L L P +     +   +WP  + A   L R+Q +   + +L EAA +  VVA  LLRR+++R R LPRAQ  +   RA + + + S  AA       V +  +L+A+  PH+ YW  A + A L P     L    +  FVT  WP L  + L     RS  + +A+  EG                          R  +R   A TP+      A        + A+   ++      VD  LMYW+VF + +    V+ L P     V   G  +   +R       +W+ LPG   G+H+ YAL+EPL+H+Y+R +R P  G  A  +    L+  V  R++++E A ++ +N+ DSWML+P  L  F+P F+   GC+YAGL+VP++NS K L    ++              +  +   AR RWLTYW  FG++W+    L  LL  LPF  HAQLALLLWLQ+P+FRG   +L   E  L  ++ G      A A         RT
Sbjct:   95 TWKSLVGWLRLAHLILKPFIGIANAIGMEIWPFVRAAGVGLARWQVTRSLTFILLEAALIGAVVAMLLLRRYMIRNRLLPRAQSWIEAKRALVRQRHDSAKAAFQQLQRSVAKKSKLAAQMLPHMLYWAVAAAAALLLPAHMAALSLGPAWEFVTVGWPILTTIMLARGRKRSGASPSAALDEGVK---------------------GGARPSIR---AGTPSGKGKRGAXXXXXXXXQVAKPKGEEEPGGRNVDEALMYWIVFALAQCCAYVLGLVPGVGRLVLSTGTGWGLQLRMWTMLAGIWLQLPGSAGGIHMAYALIEPLIHEYIRAVRPP-GGADAVARSKNGLSFLVTLRILSQERASMIAENIADSWMLLPTPLLVFSPGFVVRGGCMYAGLLVPAINSAKALAHRNTL--------------IDNSQGGARTRWLTYWAVFGMYWYFQIALASLLAWLPFANHAQLALLLWLQLPVFRGSYYVLAKIESALVAFSLGGTASPGAAARARGFFPASRT 581          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A6H5K644_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K644_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.190e-34
Identity = 67/110 (60.91%), Postives = 82/110 (74.55%), Query Frame = 2
Query: 1163 LVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVV 1492
            L+ P     KTLGR  +     N ++S  WAALAT+A  ARVRWLTYWVA+G WWH+S  +GG+LR+LP   HA+LALLLWLQVP+FRGG RILDFGERC++RW  G+ V
Sbjct:   21 LLAPIAALSKTLGRRSN-----NSAVSTAWAALATSANIARVRWLTYWVAYGSWWHLSLCVGGILRVLPLAAHAELALLLWLQVPLFRGGDRILDFGERCMDRWTFGSDV 125          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S2V8D4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8D4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 3.150e-25
Identity = 85/275 (30.91%), Postives = 133/275 (48.36%), Query Frame = 2
Query:  764 LMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFGERCLERWAQGAVVDASADAETETIDTPRRTPQSQPEQ*IIPPGGK 1588
            LMYWV+F    V+  + +++ A  +   P    + FF  +W+ LP    G+ +++  LEPL+ KY++D++ P     +    +  +AV + L++KE    L  N+ DSW+LVP LL    PS  T    +YAG  VP+ NSIK+L   +                        + RWL YW+ +  +W V   L   L  +PF+ H  L L++WLQ+P FRG  RI+    + + R     V D ++   T  I  P++T  S  +Q    P  K
Sbjct:   11 LMYWVLFAAF-VLCNYLWSTFAWRLPQMPCGAEMVFFFFVWMQLPF--GGVSILFHQLEPLIRKYIKDIKRPIGKEESL--GYLKVAVTLGLISKERGHALVSNLLDSWLLVPALLGLTMPSPFTYAFSLYAGAAVPAFNSIKSLKAEQEGPN--------------------QERWLRYWMCYAPFWVVHLALDSHLWFVPFLYHFWLLLVMWLQLPYFRGAQRIV----QTVGREINALVEDFNSRRPTTPI-APKKTLGSDCQQDKSTPSSK 255          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S2R5J1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5J1_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.590e-12
Identity = 78/284 (27.46%), Postives = 124/284 (43.66%), Query Frame = 2
Query:  764 LMYWVVFTVV----KVVSLFPFASTAVEIFG-KPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWW--HVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGG-----------GRILDFG-----ERCLERWAQGAVVDASADAETETI-DTPRRT 1543
            LM+WVVF  V    ++   FP  S     F    +VR+   F  +W+ LP    GL + Y  + P V + V     P +     I     + V+  ++++E +  + +   D W+L+  L   F+  F+T +GC+ AGL  P++ S K LG                 A +      ++VRWL YW  + V +   +S +  G+ R + F  H  L  +++LQ+P FRG             ++LD       +R L   AQ  V D    AE   +  +PRRT
Sbjct:  261 LMFWVVFAFVIAFHRLTVGFPLVSRIASFFTYHRWVRASYAFFLIWLQLPI--GGLQLAYDFIVPAVEQRVGQFSTPVSSEQRNIVF--RMLVYTGVLSQETSLRIQEVSRDGWILL-ALAFLFSAGFMTEVGCLLAGLCYPAMCSAKLLG-----------------AVMERVFIESQVRWLKYWAVYAVTFCFGLSIEAAGIWRWVLFGNHVHLVFIVYLQLPYFRGALLLYDKTKMALSQLLDLSPTVDQDRALHAGAQ-FVEDQDQAAERRRLPQSPRRT 521          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: A0A7S3LQR1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LQR1_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 4.440e-11
Identity = 72/257 (28.02%), Postives = 103/257 (40.08%), Query Frame = 2
Query:  746 QDVDWVLMYWVVFTVVKVVSLFPFASTAVEIFGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNV--TDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDE------------------WAALATAAKSAR-VRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFRGGGRILDFG 1453
            Q V + L YW + +V  V    P     + +   P   +     +LW+ +PG  SG  + +  + PLV KY + +  P  G S+T Q +    VF +L   E        V  T   +L   L   F PS  T IGCV  GL  P  + I  +      +  A  S++ +                     +  AA +    +WL YWV +  +  V       L   PF    QL L+LWLQ+P FRG  RI   G
Sbjct:  398 QSVLYWLRYWTILSVALVGEQLPIIGHIIRLL--PVWPAARLIFSLWLQVPGT-SGADLAFEFVVPLVAKYWKRIDLP--GPSSTTQNFALNMVFSQLPVSEETRTKMTEVAETGGTLLFTTLPLLFMPSIFTTIGCVVVGLGKPMYSGIVAVLAVEKAAQKARRSLNKKDNRNKRSSVNRLLRHVPGGGDMGVAAAALHCTQWLEYWVVYTSFMFVHGLASVFLFWFPFWVQMQLLLILWLQLPYFRGSRRIFKTG 649          
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Match: R1BSC6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BSC6_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-7
Identity = 68/229 (29.69%), Postives = 102/229 (44.54%), Query Frame = 2
Query:  764 LMYWVVFTVVKVVS----LFPFASTAVEI----FGKPFVRSVAFFLALWVHLPGPGSGLHVVYALLEPLVHKYVRDLRAPQNGYSATIQKWQDLAVFVRLMTKEHAELLTDNVTDSWMLVPVLLCFFTPSFITNIGCVYAGLVVPSLNSIKTLGRSRSMSTAANVSMSDEWAALATAAKSARVRWLTYWVAFGVWWHVSWQLGGLLRILPFVTHAQLALLLWLQVPIFR 1426
            LM+WV++   +++S    L PFA+  +         P    V F  A W+HLP   SGL ++Y+L+ P++              +A  Q+  D    +         L      + W+L+   LC  TP  +T    +Y  +  P+L S++ L   R  + AA           A AA + +V+ L YW+       V  QL  LL  LPF TH QL L +WLQ+P FR
Sbjct:  210 LMFWVLWASAQLLSEALALLPFAARLLPAQALSLDSPSAAPVLFCAAAWLHLPH--SGLPLLYSLVGPVL--------------AARAQRLSDALPALPAGVSAQIGL------EGWLLLAAALCLCTPYPLTAYTLLYWSVCHPALRSVEALEAQRHGAEAA-----------ADAAFATQVQ-LRYWLLHCAVSAVLQQLPWLLW-LPFSTHGQLVLAVWLQLPYFR 403          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1576.4018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LF13_ECTSI5.110e-19164.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZEP2_9STRA8.780e-6231.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5K644_9PHAE8.190e-3460.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V8D4_9STRA3.150e-2530.91Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2R5J1_9STRA1.590e-1227.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3LQR1_9STRA4.440e-1128.02Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
R1BSC6_EMIHU1.390e-729.69Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1576contigL-elsbetiae_contig1576:2..3361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTB2/DP1/HVA22-related protein
Ec32 orthologEc-21_006310.2
Exons4
Model size1846
Cds size1074
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1576.4018.1prot_L-elsbetiae_contig1576.4018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1576 1216..3361 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.199022-UTR-L-elsbetiae_contig1576:1..6531622815647.199022-UTR-L-elsbetiae_contig1576:1..653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 2..653 -
1691683012.4826677-UTR-L-elsbetiae_contig1576:1..6531691683012.4826677-UTR-L-elsbetiae_contig1576:1..653Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 2..653 -
1622815647.2133465-UTR-L-elsbetiae_contig1576:1097..12151622815647.2133465-UTR-L-elsbetiae_contig1576:1097..1215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 1098..1215 -
1691683012.4925086-UTR-L-elsbetiae_contig1576:1097..12151691683012.4925086-UTR-L-elsbetiae_contig1576:1097..1215Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1576 1098..1215 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.224283-CDS-L-elsbetiae_contig1576:1215..12291622815647.224283-CDS-L-elsbetiae_contig1576:1215..1229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 1216..1229 -
1691683012.5034103-CDS-L-elsbetiae_contig1576:1215..12291691683012.5034103-CDS-L-elsbetiae_contig1576:1215..1229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 1216..1229 -
1622815647.2357895-CDS-L-elsbetiae_contig1576:1746..18871622815647.2357895-CDS-L-elsbetiae_contig1576:1746..1887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 1747..1887 -
1691683012.5114765-CDS-L-elsbetiae_contig1576:1746..18871691683012.5114765-CDS-L-elsbetiae_contig1576:1746..1887Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 1747..1887 -
1622815647.251727-CDS-L-elsbetiae_contig1576:2442..33611622815647.251727-CDS-L-elsbetiae_contig1576:2442..3361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 2443..3361 -
1691683012.5234861-CDS-L-elsbetiae_contig1576:2442..33611691683012.5234861-CDS-L-elsbetiae_contig1576:2442..3361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1576 2443..3361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1576.4018.1

>prot_L-elsbetiae_contig1576.4018.1 ID=prot_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp
ELRLSTPGGVGVFLACPVGVDGSHNALPLARPAVPGRPYAGGVAPRPGRG
DRPLEVPGVAAPLHLAGGGSRCRLRRRRLPPPPLHRAPPVPAPRAAPGPP
PPRPAEPRLRLLHRGRRAQLPPLRARVPARGVLDGGRLLRVARPRRRRLA
PGKPVRVRDGHVADPVRPLPHAFAEEPGQRRGLERRGWGGGCGGGCCRCC
RYSRGRWCGGREQEDAGEDAGGEDTHAWGGDAGQISRVGSWARSACYAAG
RGLGADVLGGVYGGEGCQPIPVCVNGGGDLWQAVRTLRRLLFGVVGAPSR
TWKRATCGVRFAGAAGAQVREGSAGSPKRLLGDDTKMAGLGGVRPTHDQR
ACRAAHR*
back to top

mRNA from alignment at L-elsbetiae_contig1576:2..3361-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1576.4018.1 ID=mRNA_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3360bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:2..3361- (Laminarionema elsbetiae ELsaHSoW15)
GAGTTGCGCCTTAGCACTCCAGGCGGCGTTGGAGTCTTCCTGGCGTGCCC TGTCGGCGTGGACGGCAGTCATAACGCTCTTCCTCTCGCCCGTCCTGCAG TTCCTGGCCGTCCTTACGCGGGCGGTGTGGCCCCACGCCCAGGGCGCGGC GACCGCCCTCTGGAGGTACCAGGCGTCGCTGCCCCCCTCCACCTTGCTGG CGGAGGCAGCCGCTGTCGCCTTCGTCGTCGCCGCCTTCCTCCTCCGCCGC TTCATCGTGCGCCGCCGGTACCTGCCCCGCGCGCAGCGCCGGGTCCGCCT CCTCCGCGCCCGGCTGAACCGCGGCTACGCCTCCTTCACCGCGGCCGTCG AGCGCAACTTCCGCCTCTCCGCGCGCGCGTTCCCGCACGTGGCGTACTGG ACGGCGGCCGGCTCCTTCGCGTGGCTCGCCCCCGGCGCCGCCGGCTGGCT CCGGGAAAACCTGTCCGTGTTCGTGACGGCCACGTGGCCGACCCTGTACG CCCTCTACCTCACGCTTTTGCTGAGGAGCCAGGACAACGGCGCGGCCTCG AACGGCGAGGGTGGGGGGGGGGGTGCGGGGGCGGGTGCTGCCGGTGCTGC CGGTACTCCCGGGGGCGCTGGTGCGGCGGCCGCGAGCAGGAGGACGCCGG TGAGGACGCCGGTGGCGAGGACACCCACGCCTGGGGCGGGGACGCCGGCC AGATCTCCCGGGTCGGCTCTTGGGCGCGGAGCGCGTGTTACGCCGCAGGA CGTGGACTGGGTGCTGATGTACTGGGTGGTGTTTACGGTGGTGAAGGTTG TCAGCCTATTCCCGTTTGCGTCAACGGCGGTGGAGATCTTTGGCAAGCCG TTCGTACGCTCCGTCGCCTTCTTTTTGGCGTTGTGGGTGCACCTTCCAGG ACCTGGAAGCGGGCTACATGTATGTTTTAACCTAATACCGCGGATCTAAT CATATTTTCTTATGCTTTTTCCGCTCGTTTTTTTTTATTATTTTGCTGAA CTACTTGGTGGTGTGTGTTTTGGTGTTTTACTACAATATCCGCTCAACAT TTGCTTGGATGCTCTTTCAGAAACACACAAGTTGCGCGAAGGCTATGGAC GATGTATCATCGTCCGGACTCTTGTGATCGTTTTGTGCGGAGGGGTCGTG ACCGTTTGTTTCAGTTTTTCGCCACCGTCATTGGCCTCCCTCTGCGATGT GGCGCCAAACGACTCGGCGGCATGTGGTGTAACAGGGGCGGAGTTGCCAT GCGTGTTGTGCTACATGCATAGACATGCAACATTTTTTGGGCACTTGACC CAACGTGTAATCTAGATATGCCAAGATTTGTGTTTGTTGTTTCGGGCAAT GTGTACACTTGGGTCTCATTCTTGCCCTGACCATTACCGTAGGCCGACCT CTTGCCTTGTCCTTAACCTCGACCTTGCTGAACTGGACCCCGACGCTACG CACCTGCTGAACTGCTCGCTGCAGGTGGTGTACGCTTTGCTGGAGCCGCT GGTGCACAAGTACGTGAGGGATCTGCGGGCTCCCCAAAACGGCTACTCGG CGACGATACAAAAATGGCAGGACTTGGCGGTGTTCGTCCGACTCATGACC AAAGAGCATGCAGAGGTAACGGGGCGTGACTTGACTTGAACAATGGCGTG TGTTGTGAGATGAGGTGCTGTTGGGTATAGCTGCGAACTGCTGTCTGTTT TGCACCGTTGTGTTTTGCTTTCCGACATGTGGTGGAGTGCGCATTGGGAG ATATGAGCAGTTTTGGCCCTGTGATGGTGTTGTAGGGGGGCCAGGCGGGC ACCTTCTAGACTTGGACTGGAGAATCTGTCCTGTTGTAGAACACTTTTGG TTGCGGCCACGTCCACGATAAACATCACGCATTTGTGTGGTTTAAACGAG AAACCTCAGCCCCAAAATCTAGAGTGTCGTAGTGTATCGTCTACCATATA CTTTTACTAGCAGATGCTGTCGTGGCTTCCTGCTCTTTGGTGTTGTTGGA CCGCCACCGCCGTTTTTTTGGATAACGTTGGACGCTTGGATGCCCTCTTG TGCGATCGGCCGCTCGCTTCTGCCTGCTGGCGTTTCTCTCACGTTGATGC TGTTGCTTGTTGCCGCACCGCACACGTTGCAGCTGCTCACCGATAACGTC ACGGACAGCTGGATGCTCGTGCCGGTGCTGTTGTGCTTCTTCACTCCGTC TTTCATCACCAACATCGGCTGTGTTTACGCCGGGCTGGTGGTGCCTTCTT TAAACTCTATCAAGGTGAGGTACTTCTCTGCGAGACGAGGACACCTTCGC CCGGGAATCTGATAGCCTATTAATAATGATAAAACCAGATGCTTGCAGCG TGACGGCAGACCCGCTGAGTGGGCGGTAGAGATTGGTGGCATTTGACTCC GCCGTTGTTGGTGTCAGGCCGACGCTACCGCAATCGGGTGGTATTATACG ACCTCATGCAACTTTCGTGCCACCACAACCGGCAACACATCCAGGCAGTT CCGTAACACAGCATGACATATCTACAGCGAGCGATATCGCGGATATATAG TCGTTTTTTGGGCATGTTCGTCAACGTACCCGTGATGCCCGATTCAAACG CATCTCTCCACCTCTAGACCATCCAGTTTGTCCCCTCTATCATTCGTCTT CCCCCAACGCGACCATTTATATTGCCTTGTTGTTGTGTTATGTATGTTTT CTCAAAAGACCCTTGGTCGCAGCAGGTCTATGTCGACCGCCGCAAACGTG TCCATGTCCGACGAATGGGCAGCGCTAGCAACCGCGGCGAAGAGTGCGCG GGTCCGATGGCTCACATACTGGGTTGCTTTCGGGGTCTGGTGGCACGTGT CTTGGCAACTAGGCGGGCTGCTGAGAATTCTCCCTTTCGTCACCCACGCC CAGCTGGCGCTGCTGCTATGGCTGCAAGTACCCATCTTCCGGGGCGGGGG GCGTATCTTGGATTTCGGGGAACGGTGCTTGGAACGGTGGGCGCAAGGGG CCGTCGTCGATGCATCCGCAGATGCAGAGACAGAGACGATAGATACCCCG CGGCGGACACCCCAGTCACAGCCAGAGCAGTAAATAATACCCCCCGGGGG TAAACGAAGTCAGCTCGCAGTGTAAAGCATCACGTCAGTATTTATCTGCA CTTGCACCAGGCTGTGTGTGAGCTGTGAGGACTCCGGGCCTAGTGGACCA TCTACGTGTGGTAGCTGTAGGGCGTGTAAAGTGGAAATTATCAAGGACCG CCGTGGGCCAAATTTGATTGAAATGTGTATGATGACACACGATCCACAGC ATCATCTATATATCAAATGAAAGCTGTGATCGAGGGCTTTCGAATGCACC CATTTTTACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1576:2..3361-

>mRNA_L-elsbetiae_contig1576.4018.1 ID=mRNA_L-elsbetiae_contig1576.4018.1|Name=mRNA_L-elsbetiae_contig1576.4018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig1576:2..3361- (Laminarionema elsbetiae ELsaHSoW15)
GAGTTGCGCCTTAGCACTCCAGGCGGCGTTGGAGTCTTCCTGGCGTGCCC
TGTCGGCGTGGACGGCAGTCATAACGCTCTTCCTCTCGCCCGTCCTGCAG
TTCCTGGCCGTCCTTACGCGGGCGGTGTGGCCCCACGCCCAGGGCGCGGC
GACCGCCCTCTGGAGGTACCAGGCGTCGCTGCCCCCCTCCACCTTGCTGG
CGGAGGCAGCCGCTGTCGCCTTCGTCGTCGCCGCCTTCCTCCTCCGCCGC
TTCATCGTGCGCCGCCGGTACCTGCCCCGCGCGCAGCGCCGGGTCCGCCT
CCTCCGCGCCCGGCTGAACCGCGGCTACGCCTCCTTCACCGCGGCCGTCG
AGCGCAACTTCCGCCTCTCCGCGCGCGCGTTCCCGCACGTGGCGTACTGG
ACGGCGGCCGGCTCCTTCGCGTGGCTCGCCCCCGGCGCCGCCGGCTGGCT
CCGGGAAAACCTGTCCGTGTTCGTGACGGCCACGTGGCCGACCCTGTACG
CCCTCTACCTCACGCTTTTGCTGAGGAGCCAGGACAACGGCGCGGCCTCG
AACGGCGAGGGTGGGGGGGGGGGTGCGGGGGCGGGTGCTGCCGGTGCTGC
CGGTACTCCCGGGGGCGCTGGTGCGGCGGCCGCGAGCAGGAGGACGCCGG
TGAGGACGCCGGTGGCGAGGACACCCACGCCTGGGGCGGGGACGCCGGCC
AGATCTCCCGGGTCGGCTCTTGGGCGCGGAGCGCGTGTTACGCCGCAGGA
CGTGGACTGGGTGCTGATGTACTGGGTGGTGTTTACGGTGGTGAAGGTTG
TCAGCCTATTCCCGTTTGCGTCAACGGCGGTGGAGATCTTTGGCAAGCCG
TTCGTACGCTCCGTCGCCTTCTTTTTGGCGTTGTGGGTGCACCTTCCAGG
ACCTGGAAGCGGGCTACATGAGTTGCGCCTTAGCACTCCAGGCGGCGTTG
GAGTCTTCCTGGCGTGCCCTGTCGGCGTGGACGGCAGTCATAACGCTCTT
CCTCTCGCCCGTCCTGCAGTTCCTGGCCGTCCTTACGCGGGCGGTGTGGC
CCCACGCCCAGGGCGCGGCGACCGCCCTCTGGAGGTACCAGGCGTCGCTG
CCCCCCTCCACCTTGCTGGCGGAGGCAGCCGCTGTCGCCTTCGTCGTCGC
CGCCTTCCTCCTCCGCCGCTTCATCGTGCGCCGCCGGTACCTGCCCCGCG
CGCAGCGCCGGGTCCGCCTCCTCCGCGCCCGGCTGAACCGCGGCTACGCC
TCCTTCACCGCGGCCGTCGAGCGCAACTTCCGCCTCTCCGCGCGCGCGTT
CCCGCACGTGGCGTACTGGACGGCGGCCGGCTCCTTCGCGTGGCTCGCCC
CCGGCGCCGCCGGCTGGCTCCGGGAAAACCTGTCCGTGTTCGTGACGGCC
ACGTGGCCGACCCTGTACGCCCTCTACCTCACGCTTTTGCTGAGGAGCCA
GGACAACGGCGCGGCCTCGAACGGCGAGGGTGGGGGGGGGGGTGCGGGGG
CGGGTGCTGCCGGTGCTGCCGGTACTCCCGGGGGCGCTGGTGCGGCGGCC
GCGAGCAGGAGGACGCCGGTGAGGACGCCGGTGGCGAGGACACCCACGCC
TGGGGCGGGGACGCCGGCCAGATCTCCCGGGTCGGCTCTTGGGCGCGGAG
CGCGTGTTACGCCGCAGGACGTGGACTGGGTGCTGATGTACTGGGTGGTG
TTTACGGTGGTGAAGGTTGTCAGCCTATTCCCGTTTGCGTCAACGGCGGT
GGAGATCTTTGGCAAGCCGTTCGTACGCTCCGTCGCCTTCTTTTTGGCGT
TGTGGGTGCACCTTCCAGGACCTGGAAGCGGGCTACATGTGGTGTACGCT
TTGCTGGAGCCGCTGGTGCACAAGTACGTGAGGGATCTGCGGGCTCCCCA
AAACGGCTACTCGGCGACGATACAAAAATGGCAGGACTTGGCGGTGTTCG
TCCGACTCATGACCAAAGAGCATGCAGAGGTGGTGTACGCTTTGCTGGAG
CCGCTGGTGCACAAGTACGTGAGGGATCTGCGGGCTCCCCAAAACGGCTA
CTCGGCGACGATACAAAAATGGCAGGACTTGGCGGTGTTCGTCCGACTCA
TGACCAAAGAGCATGCAGAGCTGCTCACCGATAACTGCTCACCGATAA
back to top