mRNA_L-elsbetiae_contig15720.3998.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15720.3998.1
Unique NamemRNA_L-elsbetiae_contig15720.3998.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: D7FLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ5_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 2.950e-165
Identity = 277/540 (51.30%), Postives = 351/540 (65.00%), Query Frame = 1
Query:    1 MCHRWIQEGATRIAVRSAANPNNFDHFCSTCKRSEPQLVRRGEHDHQGTVGNLGVSGRASGAGIAPSRSATAASSYSRPPVVSGEVCLSPREVAAAFLAKIPHAPMVSPRENPEARAREALKPTKA---MKDKAAREGRDLGQLARTAAMATFATMNARIAIFVHEVETPA-RLGVRMICPSCRTNKFVLPPGAKNNGFSSMFSQKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKATDVVWDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQDYFPALKRAPLADAFHSIQTLTGATTTKDHPHKAHYSKEMGGGIR 1608
            MC R    G  R AVRSA NP  FDHFCSTC RSE QL RRG H+  GT+ +   S    G            +S  + P        SP  VAAAF  K P AP+ +P E  EARAR A+ PT A   M   A   G D+G+L R AAMA FAT++  +A++VHEV+T    +GVRMICPSC TN+FV  PG   NGF S+ SQK+RV HD+ GVVV + GKYRCKNP CAL   SAR  AEK EK  GG KA+++VWDDAAV+S C +GV+F   D RYM++LP AV  +LPY FFKQ   TS +LL+MV AT GD  GFHR+L+ARDQGQ +RD  RY+RFA+ EQA E +SR+D  FT WP W+ N  TL S PSVAVLN I++  H++++D++LREL+    G  + +D +FR AGK +   + ++ + GE+ KI  YGAVKSES+EE  LL QRYAD RR   T   +   YDDRCC   +D TK++    FP ++RAPLAD+FH+ Q L GATT+K H  +  Y++ +GG +R
Sbjct:    1 MCFRTQNPGDLRTAVRSAENPTKFDHFCSTCWRSEEQLERRGAHNSHGTLEDRAASQATGGXXXXXXXXXXTGNSKGKGPAARHP---SPAAVAAAFREKFPQAPLCTPVEGVEARARVAMHPTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVHVFGKYRCKNPACALNVRSARKSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVAFNTMDTRYMQLLPAAVVAKLPYRFFKQN-ITSERLLDMVSATEGDTPGFHRLLVARDQGQELRDMQRYIRFAEEEQARERRSRLDGEFTKWPGWRFNRGTLISTPSVAVLNTINKAAHLQDRDHMLRELIAQVAGEFVNSDGTFRAAGKVMDEAQCLYFLMGEDAKILGYGAVKSESEEELTLLFQRYADRRRKKGTLHALRWLYDDRCCRGCKDVTKYYGVQIFPHVERAPLADSFHATQNLAGATTSKSHERRGVYARGVGGSVR 535          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: D8LRE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE7_ECTSI)

HSP 1 Score: 454 bits (1169), Expect = 4.480e-143
Identity = 243/452 (53.76%), Postives = 312/452 (69.03%), Query Frame = 1
Query:  265 SPREVAAAFLAKIPHAPMVSPRENPEARAREALKPTKA---MKDKAAREGRDLGQLARTAAMATFATMNARIAIFVHEVETPA-RLGVRMICPSCRTNKFVLPPGAKNNGFSSMFSQKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKATDVVWDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQDYFPALKRAPLADAFHSIQTLTGATTTKDHPHKAHYSKEMGGGIR 1608
            SP  VAAAF  K P AP+ +P E  EARAR A+ PT A   M   A   G D+G+L R AAMA FAT++  +A++VHEV+T    +GVRMICPSC TN+FV  PG   NGF S+ SQK+RV HD+ GVVV + GKYRCKNP CAL   SAR  AEK EK  GG KA+++VWDDAAV+S C +GVSF   D RYM++LP AV  +LPY FFKQ G TS +LL+MV AT GD  GFHR+L+AR+QGQ +RD  RY+RFA+ EQA E +SR+D  FT WP W+ N  TL S PSVAVLN I++  H++++D++LREL+    G  + +D +FR AGK +   + ++ + GE+ KI  YGAVKSES+EE  LL QRYAD RR   T   +   YDDRCC   +D TK++    FP ++RAPLAD+FH+ Q L GATT+K H  +  Y++ +GG +R
Sbjct:  188 SPAAVAAAFREKFPQAPLCTPVEGVEARARAAMHPTAATAAMSRAATDGGADMGELLREAAMAAFATIHVAVALYVHEVKTNGGEVGVRMICPSCLTNEFVETPGVSGNGFPSVSSQKIRVAHDIHGVVVPVFGKYRCKNPACALNVRSARQSAEKAEKN-GGPKASEIVWDDAAVTSHCKNGVSFNTMDTRYMQLLPAAVVAKLPYRFFKQNG-TSERLLDMVSATEGDTPGFHRLLVAREQGQELRDMQRYIRFAEEEQARERRSRLDGEFTKWPGWRFNRGTLISTPSVAVLNTINKAAHLQDRDHMLRELIAQVAGEFVNSDGTFRAAGKVMNEAQCLYFLMGEDAKILGYGAVKSESEEELTLLFQRYADRRRKKGTLHALRWLYDDRCCRVCKDVTKYYGVQIFPHVERAPLADSFHATQNLAGATTSKSHERRGVYARGVGGSVR 637          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5JZ63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ63_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 7.020e-44
Identity = 145/467 (31.05%), Postives = 212/467 (45.40%), Query Frame = 1
Query:  262 LSPREVAAAFLAKIPHAPMVSPRENPEARAREALKPTKAMKDKAAREGRD--LGQLARTAAMATFATMNARIAIFVHEV-------ETPARL-GVRMICPSCRTNKFVLPPGAKNNGFSSMFSQKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKATDVV----WDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQG-IRDCNRYVRFAKMEQANESKSR---VDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRY----GHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQDYFPALKRAPLADAFHSIQTLTGATTTKDHPHKAHYSKEMG 1596
            L P+ VAAAF    P AP+  P +NPE RA  A+K  K      +R G+   +  L +  AMA FA      A++VHEV        TP    GVRMICP C++N  V PPG   +GF +  + K           V L G          L   S   K +     EGGQ+   V+    WD+A +    P+G S    D+R+                  +QG    ++   +R         H +       +G +      V    + +A     R   VD  F V   +  + + L     + +    D       H ++K+++ RE+     G  L  D ++R+  + + +   +F + GE+ K+H  GAV+SE KEE  LL++RYA+ RR + T L +  FYDD CC  A D TK W+ D F  + R  LAD+FH  QTL GATT+K+HP KA ++  +G
Sbjct:    6 LPPKYVAAAFNRHFPGAPICRPADNPEKRAAAAMKAAKVTPAMRSRIGKGEIMDVLLKEPAMAVFAMTQVMFALYVHEVVYVHEVVTTPGGAKGVRMICPGCKSNSEVKPPGVSGHGFPNAGAHKASSTF-----AVFLHG----------LRVPSRLGKCQ-----EGGQQKRVVIANDGWDEATIREHGPNGASLTTMDDRH-----------------GEQGRELREMHRYIRFAAKHRSAEHALWPGWKFSRGTLISTPSIVVLNTIYKAGHDDVRGGSVDT-FLVLVRFLVSARVLFRRVQILLCRHTDHNVVFCRHPQDKEHMQREIHSQYWGQFLCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHAGGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWFYDDLCCRGADDVTKGWILDIFEGVMRRALADSFHFGQTLVGATTSKNHPRKAVFAAGVG 434          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 4.500e-34
Identity = 77/193 (39.90%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  943 MQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQDYFPALKRAPLADAFH 1521
            M+ + R+L+A +QG+ +R+ +RY+RFA   ++ E          +WP WK +  TL S PS+AVLN I + GH ++K+++ RE+    GG  L  D ++R+  + + +   +F + GE+ K+H YGAV+SE KEE  LL++RYA+ RR S T L +   YD  CC  A D TK W+ D F  + R  LA++FH
Sbjct:    1 MKTYRRILVAGEQGRELREMHRYIRFAAKHRSAEH--------ALWPGWKFSRGTLISTPSIAVLNTIYKAGHDDDKEHMQREIHSQYGGQFLCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHSYGAVQSERKEEIYLLLKRYAERRRRSGTLLALKWLYDYLCCRGADDVTKGWILDIFEGVMRRALANSFH 185          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: D8LRE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRE6_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 2.280e-32
Identity = 104/268 (38.81%), Postives = 142/268 (52.99%), Query Frame = 1
Query:  265 SPREVAAAFLAKIPHAPMVSPRENPEARAREALKP---TKAMKDKAAREGRDLGQLARTAAMATFATMNARIAIFVHEV--------------ETPARLGVRMICPSCRTNKFVLPPGAKNNGFSSMFSQKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKATDVVWDDAAVSSRCPDGVSFIAADE-RYMKILPPAVREQLPYHFFKQQGAT-----SLKLLEMVRATGG--DMQGFHRMLLARDQGQGI 993
            SPR  AAAF  + P++P+  P E+ E RA EA++P   T AM+D+  ++  DLG   R AAMATFAT++  IA +VHEV               T    GVRMICP C++NKFV PPG   +GF  M   K+RV HDV GVVV + G+Y C  P C L   SA+  A +++         D  WD+  +   CP+GVSF   DE +  +I   A R   P+  +K   ++     S+ +L  + A G   D    HR LL+   GQ +
Sbjct:   89 SPRLEAAAFKRRFPNSPVCKPLESVETRAIEAMQPSAATGAMQDRPKKD-EDLGHRLREAAMATFATIDVEIAPYVHEVIFFEELVRDDRFKVNTRGGAGVRMICPGCKSNKFVKPPGVSGHGFPCM-GAKLRVAHDVAGVVVPVTGRYACLGPGCPLRLESAKRSAARKK-----SVVADDGWDEDTIKKHCPNGVSFNTMDESKQQEIERKAGRGPTPWPPWKFNRSSITATPSVAVLNTIYAAGHEEDKGHMHRELLSLVDGQFV 349          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5KAB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAB7_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.670e-23
Identity = 114/413 (27.60%), Postives = 163/413 (39.47%), Query Frame = 1
Query:  235 PPVVSGEVCLSPREVAAAFLAKIPHAPMVSPRENPEARAREALKPTKAMKDKAAR--EGRDLGQLARTAAMATFATMNARIAIFVHEVETP--ARLGVRMICPSCRTNKFVLPPGAKNNGFSSMFSQKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKATDVVWDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTK 1461
            PP    E  L P+ V AA   + P AP+  P ++PE RA  A+K  K     + R   G  +  L +   MA FAT     A++VHEV T      GVRMICP C++N  V PPG   + F +  +QK            L + K   + P   +V A                   D  WD+A     CP+G SFI  D+R                                            +L+A +QG+ +R+ +  +RF  +       S   +G                    A   RI    H + +            G  L  D ++R+  + + +   +  + GE+ K+H YGAV+SE KEE  LL+ RYA+ RR + T L +   YDD CC  A D TK
Sbjct:   31 PPQWKKERHLPPKYVVAALNRRFPDAPICRPADSPEKRAAAAMKAAKVTPAMSTRVENGAIIDVLLKELVMAVFATTQVVFALYVHEVVTTPSGAKGVRMICPGCKSNSEVKPPGVSGHDFPNAGAQKASRTF----AGTLSSWKVPRRWPTKKVVIA-------------------DDGWDEATSREHCPNGASFITMDDR--------------------------------------------ILVAGEQGRELREIHWCIRFRVLS------SSTGQG--------------------AHATRI----HSQCE------------GQFLCMDGTWRIGLRVIDSPDCLCFLLGEDAKVHSYGAVQSERKEEIYLLLNRYAERRRRNGTLLALEWVYDDLCCRGADDVTK 334          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5KXX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.130e-21
Identity = 69/237 (29.11%), Postives = 104/237 (43.88%), Query Frame = 1
Query:  763 WDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQ 1473
            WD+A +   CP+G SF   D+RYM++ P  +  +LP+ +F+Q G TS  LL+ VRAT GD+Q    M     +  G   C   +                                                H + +            G  L  D ++R+  + + +   +F + GE+ K+H YGAV+SE KEE  LL++RYA+ RR + T L +   YD  CC  A D TK W++
Sbjct:  183 WDEATIREHCPNGGSFTTMDDRYMQLPPEEIVSRLPFRYFRQNG-TSETLLDQVRATEGDLQDKEHMQRESTRSMGGSSCAXRI------------------------------------------------HSQYR------------GQFLCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHAYGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWLYDYLCCRGADDVTKGWIR 358          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5K9V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9V7_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 9.990e-17
Identity = 68/224 (30.36%), Postives = 105/224 (46.88%), Query Frame = 1
Query:  832 MKILPPAVREQLPYHFFKQQGATSLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESKSRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLGLR----------GGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQ 1473
            M++LP  +  +LP+ +F+Q G TS  LL+ VRAT GD+Q    +L+  D             F   +  +   S V     +      N++T           +  R  H   +  VL    G            GG  L  D ++R+  + + +   +F + GE+ K+H YGAV+SE KEE  LL+++YA+ RR + T L +   YDD CC  A D TK W++
Sbjct:    1 MQLLPEEIVSRLPFRYFRQNG-TSETLLDQVRATEGDLQLGCTLLVLLD-------------FRCDKSDSTENSLVIRPMCLLLLAPLNMKTCRRILVAGEQGQELREMHWCIRFCVLSSSTGQGAHATRIHSQYGGQFLCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHAYGAVQSERKEEIYLLLKKYAERRRRNGTLLALECLYDDLCCRGADDVTKGWIR 210          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5KD21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD21_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.670e-10
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 1
Query: 1207 GGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEETQLLIQRYADTRRASNTHLDVCAFYDDRCCNKA 1446
            GG  L  D ++R+  + + +   +F + GE+ K+H YGAV+SE KEE  LL++RYA+ RR + T L +   YDD CC  A
Sbjct:   28 GGQFLCMDGTWRIGLRVIDSPDCLFFLLGEDAKVHAYGAVQSERKEEIYLLLKRYAERRRRNGTLLALEWLYDDLCCRGA 107          
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Match: A0A6H5KIF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIF9_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-5
Identity = 37/90 (41.11%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  343 ARAREALKPTKAMKDKAAREGRDLGQLARTAAMATFATMNARIAIFVHEVETP--ARLGVRMICPSCRTNKFVLPPGAKNNGFSSMFSQK 606
            A A +A K T AM  +    G  +  L + +AMA FAT     A++VHEV T      GVRMICP C++N  V PPG   + F +  +QK
Sbjct:   75 AAAMKAAKVTPAMSTRV-ENGEIIDVLLKESAMAVFATTQVVFALYVHEVMTTPGGAKGVRMICPGCKSNSEVKPPGVSGHEFPNAGAQK 163          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15720.3998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FLQ5_ECTSI2.950e-16551.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRE7_ECTSI4.480e-14353.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZ63_9PHAE7.020e-4431.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB16_9PHAE4.500e-3439.90Integrase catalytic domain-containing protein n=1 ... [more]
D8LRE6_ECTSI2.280e-3238.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAB7_9PHAE3.670e-2327.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX1_9PHAE1.130e-2129.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9V7_9PHAE9.990e-1730.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD21_9PHAE1.670e-1042.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIF9_9PHAE2.240e-541.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15720contigL-elsbetiae_contig15720:224..3766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size1608
Cds size1608
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815645.8579984-CDS-L-elsbetiae_contig15720:223..4761622815645.8579984-CDS-L-elsbetiae_contig15720:223..476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 224..476 +
1691683011.6703134-CDS-L-elsbetiae_contig15720:223..4761691683011.6703134-CDS-L-elsbetiae_contig15720:223..476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 224..476 +
1622815645.8701298-CDS-L-elsbetiae_contig15720:733..9691622815645.8701298-CDS-L-elsbetiae_contig15720:733..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 734..969 +
1691683011.6807582-CDS-L-elsbetiae_contig15720:733..9691691683011.6807582-CDS-L-elsbetiae_contig15720:733..969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 734..969 +
1622815645.8830779-CDS-L-elsbetiae_contig15720:1256..13731622815645.8830779-CDS-L-elsbetiae_contig15720:1256..1373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1257..1373 +
1691683011.7017388-CDS-L-elsbetiae_contig15720:1256..13731691683011.7017388-CDS-L-elsbetiae_contig15720:1256..1373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1257..1373 +
1622815645.8962963-CDS-L-elsbetiae_contig15720:1617..18381622815645.8962963-CDS-L-elsbetiae_contig15720:1617..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1618..1838 +
1691683011.7182288-CDS-L-elsbetiae_contig15720:1617..18381691683011.7182288-CDS-L-elsbetiae_contig15720:1617..1838Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1618..1838 +
1622815645.911402-CDS-L-elsbetiae_contig15720:1997..21181622815645.911402-CDS-L-elsbetiae_contig15720:1997..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1998..2118 +
1691683011.7287385-CDS-L-elsbetiae_contig15720:1997..21181691683011.7287385-CDS-L-elsbetiae_contig15720:1997..2118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 1998..2118 +
1622815645.9260204-CDS-L-elsbetiae_contig15720:2430..26491622815645.9260204-CDS-L-elsbetiae_contig15720:2430..2649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 2431..2649 +
1691683011.7377963-CDS-L-elsbetiae_contig15720:2430..26491691683011.7377963-CDS-L-elsbetiae_contig15720:2430..2649Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 2431..2649 +
1622815645.9380102-CDS-L-elsbetiae_contig15720:2907..31071622815645.9380102-CDS-L-elsbetiae_contig15720:2907..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 2908..3107 +
1691683011.7479334-CDS-L-elsbetiae_contig15720:2907..31071691683011.7479334-CDS-L-elsbetiae_contig15720:2907..3107Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 2908..3107 +
1622815645.948261-CDS-L-elsbetiae_contig15720:3325..34881622815645.948261-CDS-L-elsbetiae_contig15720:3325..3488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 3326..3488 +
1691683011.756682-CDS-L-elsbetiae_contig15720:3325..34881691683011.756682-CDS-L-elsbetiae_contig15720:3325..3488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 3326..3488 +
1622815645.9615555-CDS-L-elsbetiae_contig15720:3688..37661622815645.9615555-CDS-L-elsbetiae_contig15720:3688..3766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 3689..3766 +
1691683011.7653663-CDS-L-elsbetiae_contig15720:3688..37661691683011.7653663-CDS-L-elsbetiae_contig15720:3688..3766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15720 3689..3766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15720.3998.1prot_L-elsbetiae_contig15720.3998.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15720 224..3766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15720.3998.1

>prot_L-elsbetiae_contig15720.3998.1 ID=prot_L-elsbetiae_contig15720.3998.1|Name=mRNA_L-elsbetiae_contig15720.3998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=536bp
MCHRWIQEGATRIAVRSAANPNNFDHFCSTCKRSEPQLVRRGEHDHQGTV
GNLGVSGRASGAGIAPSRSATAASSYSRPPVVSGEVCLSPREVAAAFLAK
IPHAPMVSPRENPEARAREALKPTKAMKDKAAREGRDLGQLARTAAMATF
ATMNARIAIFVHEVETPARLGVRMICPSCRTNKFVLPPGAKNNGFSSMFS
QKVRVVHDVDGVVVLLAGKYRCKNPECALVKASARSKAEKEEKKEGGQKA
TDVVWDDAAVSSRCPDGVSFIAADERYMKILPPAVREQLPYHFFKQQGAT
SLKLLEMVRATGGDMQGFHRMLLARDQGQGIRDCNRYVRFAKMEQANESK
SRVDEGFTVWPAWKHNVQTLTSPPSVAVLNRIDRYGHVENKDNVLRELLG
LRGGNILRTDTSFRVAGKTLLAVKGIFSMFGEEGKIHRYGAVKSESKEET
QLLIQRYADTRRASNTHLDVCAFYDDRCCNKARDPTKHWLQDYFPALKRA
PLADAFHSIQTLTGATTTKDHPHKAHYSKEMGGGIR
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mRNA from alignment at L-elsbetiae_contig15720:224..3766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15720.3998.1 ID=mRNA_L-elsbetiae_contig15720.3998.1|Name=mRNA_L-elsbetiae_contig15720.3998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3543bp|location=Sequence derived from alignment at L-elsbetiae_contig15720:224..3766+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCACCGGTGGATCCAGGAAGGAGCGACACGGATTGCAGTACGCAG CGCAGCAAACCCGAACAACTTCGATCATTTCTGCAGCACGTGCAAGCGGT CGGAGCCGCAGCTGGTCCGGCGTGGGGAGCATGACCACCAGGGCACGGTG GGAAATCTAGGCGTAAGCGGGAGGGCGTCGGGAGCTGGAATCGCGCCGTC GAGGTCAGCAACAGCAGCAAGCTCTTATTCGCGTCCTCCTGTGGTGAGCG GCGGTGGGAGTATTAGCTCTCCAGAGTCAGAGCCGGAGGGAGACGACAGC GACGATGATGAGCTAGAGGAAGATATAGAAGAAGCGGGTGCACAGGTGAC GAGTCTTAGAAGAGCGATGACCTGCAAGTCGCGTTGGCGGTCGTGCTGAA GGCTGTCCACAAGTTTCTGCCTAAACTCGCTCCAGACGGCCGTTTCATAG CGAGCAAGCACTTGGCGGCCGACGGCGGTAGCAACAAGGTGGACACGGGG AAGGGGAAAGAGGTTTGTCTCTCGCCGAGAGAAGTGGCTGCTGCGTTCTT GGCGAAAATTCCCCATGCACCCATGGTCTCACCCAGAGAAAATCCGGAGG CAAGGGCGAGAGAGGCACTGAAGCCAACTAAGGCTATGAAAGATAAGGCT GCGCGCGAAGGAAGGGATTTGGGCCAGCTGGCGCGGACGGCGGCAATGGC GACTTTTGCTACCATGAACGCACGCATCGCCATCTTCGTGCATGAAGTGA TATTCTACGAGGAACTGGTCAAGCTCGACGCGTTTACGGTGGGCGTCGTA TAGGATTGGATGTATGGACATCTGTTGTCTGTATTGTACTCTAGATTATA TATCTATATACATATGTACAACAGTAGTGTAGTCCTTGGTGGGTAATTTA CAGCAGCCGGTGCACGGCGGCTATTTAACCCTATCACTGTTGCCCCCTAA GCGAAACAGACAGAGCTCGAAACAGATGTTGTTGCTGTGTTTTTTCATTT TTTTCCTACCGCTGCTCGTTGGTTTTGTGTCAGGTCGAGACCCCCGCTCG ATTGGGTGTGAGAATGATCTGCCCGTCGTGCCGGACGAACAAGTTTGTTC TACCTCCAGGAGCAAAAAATAACGGCTTCTCCTCGATGTTTAGCCAGAAG GTGAGCAGAGCGGTGGTCGTGGTTTCGCACGTCTAGGGTTGGTTGGTTGA ACTGGGCGGGGGAGCAACAGCAGTAGTAGTGCTGCTGCTGCTGTTGTGTA CATACCAACACAGTATGTAGCACGCATGTACTTTGTTTTTTGCATCGACG AGAGTACATAAACCCCATCCCGCCGCGGGGAAGAGACATGCCAGATTTTC CCAACGACGTTTCCTCCTGACCTGTGCGCTCTCACGGCCGACAGGTGCGA GTAGTTCACGACGTCGACGGAGTGGTGGTCCTCCTGGCCGGCAAGTATCG CTGCAAAAACCCAGAGTGCGCTCTGGTGAAGGCCAGTGCTCGCTCCAAGG CGGAGAAGGAGGAGAAGAAGGAAGGGGGGCAGAAGGCCACCGACGTCGTG TGGGATGACGCGGCCGTCTCTTCGAGGTGCCCGGACGGCGTGTCCTTCAT CGCTGCGGATGAGAGGTACGCTGTGTTGGTTATTTTCGCCCTGGCATGCA ATATGTATGGACCGTGGGCGAGCTCGTACATATGCGTCGAGGAATCACCT GAACATGTGTTGTCTTGTCTGAAGTACACTCACAACGGCGATTGCTTTCG ATGCCTCCGGTATGTACATCATAGGTACATGAAGATCCTTCCCCCCGCGG TCCGAGAACAGCTACCATACCACTTCTTCAAGCAGCAAGGCGCGACATCT CTGAAGCTGTTGGAAATGGTTCGCGCAACGGGTGGCGATATGCAGGTACT CTGTTCAATGTGGTCCTGATGACGGTAGAAATTGTGTGGAAGTCTGACCC GTTCATCGAGGTTGTTGTCTGGGAGAGCTCAGAGATCAGTACGGTTGTGA AGGCATCCCGTCTTAATGTGCTGCCCATTTCTGCAGGAGTTGCCCCTATC TTCTGGGGTTGTTTCAAAACACGACACATTGTTTCGCAAACGGAGAGGCT ATTCGTATCTTCTGTTTAGAATTGTCGACACGCACAACGCATGCTTACAT TATGGTGCGCATACATGCCCCTTTCCCCCCCTCACGCACGACGCCGCCGC CTTTCAGGGTTTCCACCGGATGCTACTCGCCCGCGACCAGGGACAGGGGA TAAGAGACTGTAATCGGTACGTGCGGTTCGCGAAGATGGAGCAGGCCAAC GAGAGCAAGAGTCGAGTCGACGAGGGGTTTACGGTGTGGCCAGCATGGAA ACACAACGTCCAGACGCTGACTTCGCCGCCTTCCGTGGCCGTCTTGAACA GAATCGACAGATATGGGCACGTGGAGGTGAGAAAAGCCAGCGTGGCGGAG GGTGTGGGCTCCAGTATCATTGCTCTTGCCAGAATTCTAGATCGTGCACG AGGTACATATAGGTCGGTTGGAATGTTATTTGTTTATTTGTTCGTCACAT TTATTTCCAGTATGGTCATTTTGTTTTACATATAGATAATTTTACGCTTC CATATTCGAAGCTGAGTTGAACAAGACGGTCCTGTGTACCCACCTGCCGC GTGATCTGTTGCCGTTTTGCTTTTATCCCCACAGAACAAGGACAACGTGC TTCGCGAGCTACTTGGTCTACGCGGGGGGAACATTCTCAGGACGGACACC TCTTTCCGCGTCGCCGGAAAAACTCTTCTTGCGGTGAAAGGCATCTTCTC TATGTTTGGAGAAGAGGGCAAGATCCACAGATATGGAGCTGTTAAGTCAG AGAGCAAGGAAGAAACCCAGTTACTCATCCAGAGGTGCGCGCCTTTTTTT TGCGTCTGTGTTGCTCCGCTTCGAGACAATATTTTCGCAGTCAACGGAGA CTTCGGGGGGAAGGAGCCGGAGAGAACGGCCGGACACGTATGTATGCACA CAGCTTGTTTTTTTTTCGCTCGACCCGTCGTCGGTCTGTGCATGCGTTAG AATGACCCGTGTGTTTTGTCCGTAAATGTTGTGGATTAACACATGCACAC AGGTACGCGGACACGCGGAGAGCGAGCAACACGCATCTTGATGTGTGCGC GTTCTACGACGACCGCTGTTGCAATAAAGCCCGAGATCCGACGAAACACT GGTTGCAAGACTATTTCCCCGCACTTAAGCGAGCGCCACTGGCTGATGCG TTCCACAGTATTCAGGTACGATGGGCACGCCATGGGCCATGGGGTTTCAG CGGCTTACGAGATTTCGCCCTCCCTCGTGCCTCGTGTAGGGCGTACACTG CTGTGTGGTTGCTGAAAAACAAAAAACGCTCTCCGACTTGATCCGCAAGC CTAAATCCACAACCTGTTTTCGCACCCCTTTCTGTTTTGGTACTCGCTGC GCTCTGCGGCGCCAGACTTTAACCGGCGCCACTACGACAAAGGACCACCC GCACAAAGCGCACTATTCCAAGGAAATGGGGGGGGGGATCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15720:224..3766+

>mRNA_L-elsbetiae_contig15720.3998.1 ID=mRNA_L-elsbetiae_contig15720.3998.1|Name=mRNA_L-elsbetiae_contig15720.3998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3216bp|location=Sequence derived from alignment at L-elsbetiae_contig15720:224..3766+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCACCGGTGGATCCAGGAAGGAGCGACACGGATTGCAGTACGCAG
CGCAGCAAACCCGAACAACTTCGATCATTTCTGCAGCACGTGCAAGCGGT
CGGAGCCGCAGCTGGTCCGGCGTGGGGAGCATGACCACCAGGGCACGGTG
GGAAATCTAGGCGTAAGCGGGAGGGCGTCGGGAGCTGGAATCGCGCCGTC
GAGGTCAGCAACAGCAGCAAGCTCTTATTCGCGTCCTCCTGTGGTGAGCG
GCGATGTGCCACCGGTGGATCCAGGAAGGAGCGACACGGATTGCAGTACG
CAGCGCAGCAAACCCGAACAACTTCGATCATTTCTGCAGCACGTGCAAGC
GGTCGGAGCCGCAGCTGGTCCGGCGTGGGGAGCATGACCACCAGGGCACG
GTGGGAAATCTAGGCGTAAGCGGGAGGGCGTCGGGAGCTGGAATCGCGCC
GTCGAGGTCAGCAACAGCAGCAAGCTCTTATTCGCGTCCTCCTGTGGTGA
GCGGCGAGGTTTGTCTCTCGCCGAGAGAAGTGGCTGCTGCGTTCTTGGCG
AAAATTCCCCATGCACCCATGGTCTCACCCAGAGAAAATCCGGAGGCAAG
GGCGAGAGAGGCACTGAAGCCAACTAAGGCTATGAAAGATAAGGCTGCGC
GCGAAGGAAGGGATTTGGGCCAGCTGGCGCGGACGGCGGCAATGGCGACT
TTTGCTACCATGAACGCACGCATCGCCATCTTCGTGCATGAAAGGTTTGT
CTCTCGCCGAGAGAAGTGGCTGCTGCGTTCTTGGCGAAAATTCCCCATGC
ACCCATGGTCTCACCCAGAGAAAATCCGGAGGCAAGGGCGAGAGAGGCAC
TGAAGCCAACTAAGGCTATGAAAGATAAGGCTGCGCGCGAAGGAAGGGAT
TTGGGCCAGCTGGCGCGGACGGCGGCAATGGCGACTTTTGCTACCATGAA
CGCACGCATCGCCATCTTCGTGCATGAAGTCGAGACCCCCGCTCGATTGG
GTGTGAGAATGATCTGCCCGTCGTGCCGGACGAACAAGTTTGTTCTACCT
CCAGGAGCAAAAAATAACGGCTTCTCCTCGATGTTTAGCCAGAAGGTCGA
GACCCCCGCTCGATTGGGTGTGAGAATGATCTGCCCGTCGTGCCGGACGA
ACAAGTTTGTTCTACCTCCAGGAGCAAAAAATAACGGCTTCTCCTCGATG
TTTAGCCAGAAGGTGCGAGTAGTTCACGACGTCGACGGAGTGGTGGTCCT
CCTGGCCGGCAAGTATCGCTGCAAAAACCCAGAGTGCGCTCTGGTGAAGG
CCAGTGCTCGCTCCAAGGCGGAGAAGGAGGAGAAGAAGGAAGGGGGGCAG
AAGGCCACCGACGTCGTGTGGGATGACGCGGCCGTCTCTTCGAGGTGCCC
GGACGGCGTGTCCTTCATCGCTGCGGATGAGAGGTGCGAGTAGTTCACGA
CGTCGACGGAGTGGTGGTCCTCCTGGCCGGCAAGTATCGCTGCAAAAACC
CAGAGTGCGCTCTGGTGAAGGCCAGTGCTCGCTCCAAGGCGGAGAAGGAG
GAGAAGAAGGAAGGGGGGCAGAAGGCCACCGACGTCGTGTGGGATGACGC
GGCCGTCTCTTCGAGGTGCCCGGACGGCGTGTCCTTCATCGCTGCGGATG
AGAGGTACATGAAGATCCTTCCCCCCGCGGTCCGAGAACAGCTACCATAC
CACTTCTTCAAGCAGCAAGGCGCGACATCTCTGAAGCTGTTGGAAATGGT
TCGCGCAACGGGTGGCGATATGCAGGTACATGAAGATCCTTCCCCCCGCG
GTCCGAGAACAGCTACCATACCACTTCTTCAAGCAGCAAGGCGCGACATC
TCTGAAGCTGTTGGAAATGGTTCGCGCAACGGGTGGCGATATGCAGGGTT
TCCACCGGATGCTACTCGCCCGCGACCAGGGACAGGGGATAAGAGACTGT
AATCGGTACGTGCGGTTCGCGAAGATGGAGCAGGCCAACGAGAGCAAGAG
TCGAGTCGACGAGGGGTTTACGGTGTGGCCAGCATGGAAACACAACGTCC
AGACGCTGACTTCGCCGCCTTCCGTGGCCGTCTTGAACAGAATCGACAGA
TATGGGCACGTGGAGGGTTTCCACCGGATGCTACTCGCCCGCGACCAGGG
ACAGGGGATAAGAGACTGTAATCGGTACGTGCGGTTCGCGAAGATGGAGC
AGGCCAACGAGAGCAAGAGTCGAGTCGACGAGGGGTTTACGGTGTGGCCA
GCATGGAAACACAACGTCCAGACGCTGACTTCGCCGCCTTCCGTGGCCGT
CTTGAACAGAATCGACAGATATGGGCACGTGGAGAACAAGGACAACGTGC
TTCGCGAGCTACTTGGTCTACGCGGGGGGAACATTCTCAGGACGGACACC
TCTTTCCGCGTCGCCGGAAAAACTCTTCTTGCGGTGAAAGGCATCTTCTC
TATGTTTGGAGAAGAGGGCAAGATCCACAGATATGGAGCTGTTAAGTCAG
AGAGCAAGGAAGAAACCCAGTTACTCATCCAGAGAACAAGGACAACGTGC
TTCGCGAGCTACTTGGTCTACGCGGGGGGAACATTCTCAGGACGGACACC
TCTTTCCGCGTCGCCGGAAAAACTCTTCTTGCGGTGAAAGGCATCTTCTC
TATGTTTGGAGAAGAGGGCAAGATCCACAGATATGGAGCTGTTAAGTCAG
AGAGCAAGGAAGAAACCCAGTTACTCATCCAGAGGTACGCGGACACGCGG
AGAGCGAGCAACACGCATCTTGATGTGTGCGCGTTCTACGACGACCGCTG
TTGCAATAAAGCCCGAGATCCGACGAAACACTGGTTGCAAGACTATTTCC
CCGCACTTAAGCGAGCGCCACTGGCTGATGCGTTCCACAGTATTCAGGTA
CGCGGACACGCGGAGAGCGAGCAACACGCATCTTGATGTGTGCGCGTTCT
ACGACGACCGCTGTTGCAATAAAGCCCGAGATCCGACGAAACACTGGTTG
CAAGACTATTTCCCCGCACTTAAGCGAGCGCCACTGGCTGATGCGTTCCA
CAGTATTCAGACTTTAACCGGCGCCACTACGACAAAGGACCACCCGCACA
AAGCGCACTATTCCAAGGAAATGGGGGGGGGGATCCGCACTTTAACCGGC
GCCACTACGACAAAGGACCACCCGCACAAAGCGCACTATTCCAAGGAAAT
GGGGGGGGGGATCCGC
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