mRNA_L-elsbetiae_contig15476.3856.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15476.3856.1
Unique NamemRNA_L-elsbetiae_contig15476.3856.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: D7FW56_ECTSI (Brix domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW56_ECTSI)

HSP 1 Score: 440 bits (1132), Expect = 1.260e-149
Identity = 218/231 (94.37%), Postives = 223/231 (96.54%), Query Frame = 3
Query:  201 VELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            VELEDDET K +SSIDDEYAQAG+RDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIV HLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLI DKFST LGQRVADVLKYLFPVPKADS RVMTFSNE DV++FRHHMYEKRGGKE+VLHEVGPRFEMQLYQLRLGTLDQ EAENEWVMRPYMNSSKKRRFL
Sbjct:   56 VELEDDETCKLKSSIDDEYAQAGIRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVCHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIFDKFSTPLGQRVADVLKYLFPVPKADSRRVMTFSNEEDVLYFRHHMYEKRGGKEMVLHEVGPRFEMQLYQLRLGTLDQVEAENEWVMRPYMNSSKKRRFL 286          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A835ZEG9_9STRA (Anticodon-binding protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEG9_9STRA)

HSP 1 Score: 363 bits (931), Expect = 3.220e-119
Identity = 171/233 (73.39%), Postives = 208/233 (89.27%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGG-KEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++ELEDDET+K RS  DDEYAQAG RDP+VCVTTSR+PSSRLKQFAKELKL+VPNAQRINRGN+KV  L+ A R ++FTD++VVQETRGEPDGL+V HLPLGPTA+FTLSNCVLRHDI +RGT+SE YPH+I+  FSTALG R AD+LKYLFPVPK +S R +TF+N++D + FRHH++E++GG KEV L EVGPRFEMQLYQ++LGT+DQ EA+NEWV+RPYMNS+K+RR+L
Sbjct:   57 EIELEDDETAKVRSHADDEYAQAGHRDPRVCVTTSREPSSRLKQFAKELKLIVPNAQRINRGNYKVSGLIDAARQNDFTDVVVVQETRGEPDGLLVCHLPLGPTAYFTLSNCVLRHDIPNRGTMSEAYPHMILHGFSTALGARTADILKYLFPVPKPESKRAITFANDSDFISFRHHVWERKGGSKEVTLKEVGPRFEMQLYQIKLGTVDQLEADNEWVLRPYMNSAKRRRYL 289          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A7S2PLF4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PLF4_9STRA)

HSP 1 Score: 323 bits (828), Expect = 1.280e-103
Identity = 150/233 (64.38%), Postives = 194/233 (83.26%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDI-ADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            +++ ED +TS  +S +DDEY  AG+ DP++CVTTSRDPSSRLKQF KE+KL++PN+ RINRGN++V EL+ +CR ++FTD++VVQETRGEPDGL+V HLP+GPTAFF LSN VLRHD+      +SE YPHLI++ F+T LG+R+ +VLK LFPVPKA+S RV+TF N+ D + FRHHMYEK+G  +V+LHEVGPRFEM+LYQLRLGTLDQ +AENE+V+RPY N++ KR  L
Sbjct:   64 EIDAEDTKTSVVKSHVDDEYGDAGLEDPRICVTTSRDPSSRLKQFVKEVKLLIPNSTRINRGNNRVDELIASCRDAQFTDVVVVQETRGEPDGLVVCHLPMGPTAFFNLSNSVLRHDLEGGAAPMSEAYPHLILNNFNTNLGKRIGNVLKCLFPVPKAESKRVITFGNDNDFISFRHHMYEKQGKDKVILHEVGPRFEMRLYQLRLGTLDQKDAENEYVLRPYQNTAIKRSVL 296          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A067BWM8_SAPPC (Brix domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BWM8_SAPPC)

HSP 1 Score: 321 bits (822), Expect = 7.480e-103
Identity = 146/232 (62.93%), Postives = 195/232 (84.05%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++E +DD+   P+S IDDEY  AG+ DPK+ +TTSRDPS+RLK+FA+E++L+ PNA R+NRG H +G+LV + R++EFTD++++ ETRGEPDGL+V HLP GPTA+F+L N V+RHDI DR TVSE YPH+I+DKF+T++GQRV ++LKYLFPVPK DS RV+TFSN  D + FRHH+++K G +EV L E GPRFE+QLYQ++LGTL+Q EAENEWV+RPYMN++KKRR +
Sbjct:   57 ELEFDDDKHIVPKSHIDDEYQNAGMFDPKIAITTSRDPSARLKKFAQEVRLIFPNAVRLNRGAHTIGDLVESARANEFTDLVMITETRGEPDGLVVCHLPYGPTAYFSLQNVVMRHDIEDRATVSEAYPHIILDKFNTSMGQRVGNILKYLFPVPKPDSKRVITFSNTDDFLSFRHHVFKKTG-REVELQECGPRFELQLYQIKLGTLEQKEAENEWVLRPYMNTAKKRRVI 287          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: K3WK67_GLOUD (Brix domain-containing protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WK67_GLOUD)

HSP 1 Score: 319 bits (818), Expect = 3.650e-102
Identity = 149/232 (64.22%), Postives = 193/232 (83.19%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++E +D    KP + IDDEY  AG+ DPK+ +TTSRDPSSRLKQFA+E++L+ PNA R+NRG H VG+LV + RS ++TD+++V ETRGEPDGL+VSHLP GPTA+F+LSN VLRHDI DR T+SE YPH+I+++F T LG+RV+++LK+LFPVPK DS RV+TFSN+ D + FRHH+++K G ++V L E GPRFE+QLYQL+LGT DQ EAENEWV+RPYMNS+KKRR L
Sbjct:   63 EMEYDDVVHEKPLNHIDDEYKNAGMFDPKIAITTSRDPSSRLKQFAQEIRLIFPNAIRLNRGAHTVGDLVESARSHDYTDLVIVTETRGEPDGLVVSHLPYGPTAYFSLSNTVLRHDIEDRATISEAYPHIILNQFETVLGKRVSNILKHLFPVPKPDSKRVITFSNDNDFISFRHHVFKKTG-RDVELQECGPRFELQLYQLKLGTCDQKEAENEWVLRPYMNSAKKRRVL 293          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A0P1AMH6_PLAHL (U3 small nucleolar ribonucleoprotein protein imp4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AMH6_PLAHL)

HSP 1 Score: 318 bits (814), Expect = 1.190e-101
Identity = 151/232 (65.09%), Postives = 195/232 (84.05%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++E +D+   KP + IDDEY  AG+ DPKV +TTSRDPSSRLKQFA+E++L+ PNA R+NRG H VG+LV + R+++FTD+++V ETRGEPDGL+V HLP GP+A+F+LSN VLRHDI DR TVSE YPHLI+++F+T LGQRVA++LK+LFPVPK D+ RV+TFSN+ D V FRHH++ K  G++V L E GPRFE+QLYQ++LGTL+Q EAENEWV+RPYMNS+KKRR L
Sbjct:   57 EMEYDDEAHEKPINHIDDEYKNAGMFDPKVAITTSRDPSSRLKQFAQEIRLIFPNAIRLNRGAHTVGDLVESARANDFTDLLLVTETRGEPDGLVVCHLPYGPSAYFSLSNTVLRHDIEDRATVSEAYPHLIINQFATPLGQRVANILKHLFPVPKPDAKRVITFSNDNDFVSFRHHVF-KVTGRDVELQECGPRFELQLYQVKLGTLEQKEAENEWVLRPYMNSAKKRRVL 287          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A024FYN4_9STRA (Brix domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FYN4_9STRA)

HSP 1 Score: 318 bits (814), Expect = 1.190e-101
Identity = 148/232 (63.79%), Postives = 191/232 (82.33%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++E +D++  KP  +IDDEY  AG+ DPK+ +TTSRDPSSRLKQFA+EL++++PNA R+NRG H +  LV + RS+EF+D+I+V ETRGEPDGL+V HLP GPTA+F+LSN VLRHDI DR T+SE YPHLI+++F TALG+RVA +LK+LFPVPK DS RV+TF+N+ D + FRHH + K+G K+V L E GPRFE+QLYQ++LGT DQ EAENEWV+RPYMNS+K R  L
Sbjct:   57 EMEFDDEKHEKPVDTIDDEYRNAGIFDPKIAITTSRDPSSRLKQFAQELRVIIPNAVRLNRGAHTIINLVESARSNEFSDLILVTETRGEPDGLVVCHLPFGPTAYFSLSNTVLRHDIEDRATISEAYPHLILNQFETALGRRVASILKHLFPVPKTDSKRVITFANDHDFISFRHHTFRKQG-KQVELSECGPRFELQLYQIKLGTCDQKEAENEWVLRPYMNSAKNRNHL 287          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A4D9D6I8_9STRA (Brix domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D6I8_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.710e-101
Identity = 150/234 (64.10%), Postives = 190/234 (81.20%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGGK--EVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++ LEDD T++P + IDDEY  AG RDPKVCVTTSRDPSSRLKQF KE+KL+ PNAQ +NRGN KV ELV ACR+ +FTD++VVQETRG+PDGL+V HLPLGPTA+FT+SN V+RHDI DR  VSE YPHLI++ F + LG+RVAD+LK+ FP P+  S RV+TF+NE D + FRHH +EK  G   EV L E+GPRF++ ++Q++LGTL+Q +AE E+V RPYMN++KKRR L
Sbjct:   58 EINLEDDITARPHNHIDDEYGLAGTRDPKVCVTTSRDPSSRLKQFMKEVKLIFPNAQAVNRGNTKVLELVEACRTHDFTDIVVVQETRGQPDGLLVCHLPLGPTAYFTISNVVMRHDIEDRAAVSEAYPHLILEGFVSTLGRRVADILKFTFPAPRPASQRVVTFANEDDRIVFRHHTFEKAPGTKGEVTLKEIGPRFDLTVFQVKLGTLEQTDAETEFVFRPYMNTAKKRRML 291          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A0D6R0Z1_ARACU (Brix domain-containing protein n=1 Tax=Araucaria cunninghamii TaxID=56994 RepID=A0A0D6R0Z1_ARACU)

HSP 1 Score: 317 bits (812), Expect = 2.900e-101
Identity = 150/236 (63.56%), Postives = 193/236 (81.78%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADR---GTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEKRGG-KEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            +++ EDD+T+  ++ IDDEYA A  RDPK+ +TTSRDPSSRL QF KELK+V PNAQRINRGN  + E+V ACRS EFTD+++V E RGEPDGLIV HLP GP+A+F L N V RHDI D+   GT+SE YPHLI+  FST LG+R A++LKYLFPVPK D+ R++TF+N++D + FRHH+YEK GG K + L EVGPRFE++LYQ++LGT+DQ EA+NEWV+RPYMN++KK++FL
Sbjct:   56 EIDHEDDQTAVLKTHIDDEYANAAERDPKILLTTSRDPSSRLTQFVKELKIVFPNAQRINRGNQVIAEIVEACRSHEFTDIVMVHEHRGEPDGLIVCHLPFGPSAYFGLHNVVTRHDIKDKQAVGTMSEAYPHLILHNFSTKLGERTANILKYLFPVPKPDTKRIITFANQSDYISFRHHVYEKPGGPKSIELKEVGPRFELRLYQIKLGTIDQMEAQNEWVIRPYMNTTKKQKFL 291          
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Match: A0A1Y1I9H7_KLENI (IMP4 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I9H7_KLENI)

HSP 1 Score: 315 bits (806), Expect = 2.160e-100
Identity = 149/236 (63.14%), Postives = 194/236 (82.20%), Query Frame = 3
Query:  198 QVELEDDETSKPRSSIDDEYAQAGVRDPKVCVTTSRDPSSRLKQFAKELKLVVPNAQRINRGNHKVGELVGACRSSEFTDMIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADR---GTVSEVYPHLIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYEK-RGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRRFL 893
            ++ELEDD T++ R+ IDDEYA+AG RDPK+ +TTSRDPSSRL QF KELK+V PNAQRINRG   + ++V ACRS++FTD+++V E RGEPDGL+V HLP GPTA+F LSN V RHDI DR   GT+SE +PHLI++ F+T LG R  ++LK+LFPVPK +S R++TF+N++D + FRHH+YEK +G K V L EVGPRFE++LYQ++LGT+DQ EAE+EWV+RPYMNS++KR  L
Sbjct:   56 EIELEDDVTAEQRTHIDDEYARAGERDPKILLTTSRDPSSRLTQFVKELKIVFPNAQRINRGGQVISQIVEACRSNDFTDIVMVHEHRGEPDGLVVCHLPFGPTAYFGLSNVVTRHDIKDRAAVGTMSEAFPHLILNNFNTKLGLRTQNILKFLFPVPKDESKRIITFANQSDYISFRHHIYEKPKGAKSVELKEVGPRFELRLYQVKLGTMDQSEAEDEWVIRPYMNSARKRTAL 291          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15476.3856.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW56_ECTSI1.260e-14994.37Brix domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835ZEG9_9STRA3.220e-11973.39Anticodon-binding protein n=1 Tax=Tribonema minus ... [more]
A0A7S2PLF4_9STRA1.280e-10364.38Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A067BWM8_SAPPC7.480e-10362.93Brix domain-containing protein n=3 Tax=Saprolegnia... [more]
K3WK67_GLOUD3.650e-10264.22Brix domain-containing protein n=21 Tax=Oomycota T... [more]
A0A0P1AMH6_PLAHL1.190e-10165.09U3 small nucleolar ribonucleoprotein protein imp4 ... [more]
A0A024FYN4_9STRA1.190e-10163.79Brix domain-containing protein n=1 Tax=Albugo cand... [more]
A0A4D9D6I8_9STRA2.710e-10164.10Brix domain-containing protein n=2 Tax=Monodopsida... [more]
A0A0D6R0Z1_ARACU2.900e-10163.56Brix domain-containing protein n=1 Tax=Araucaria c... [more]
A0A1Y1I9H7_KLENI2.160e-10063.14IMP4 n=1 Tax=Klebsormidium nitens TaxID=105231 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15476contigL-elsbetiae_contig15476:578..3695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.6
Seed ortholog evalue6.7e-78
Seed eggNOG ortholog2880.D7FW56
Preferred nameIMP4
KEGG koko:K14561
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0001650,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019843,GO:0022613,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034457,GO:0034470,GO:0034641,GO:0034660,GO:0042134,GO:0042162,GO:0042254,GO:0042274,GO:0043047,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098847,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.rRNA primary transcript binding
EggNOG OGsCOG2136@1,KOG2781@2759
COG Functional cat.AJ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Ec32 ortholog descriptionBrix domain
Ec32 orthologEc-01_003470.1
Exons4
Model size1711
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15476.3856.1prot_L-elsbetiae_contig15476.3856.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15476 1443..2880 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4173903-UTR-L-elsbetiae_contig15476:577..9691622815631.4173903-UTR-L-elsbetiae_contig15476:577..969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 578..969 +
1691683002.5391593-UTR-L-elsbetiae_contig15476:577..9691691683002.5391593-UTR-L-elsbetiae_contig15476:577..969Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 578..969 +
1622815631.4281933-UTR-L-elsbetiae_contig15476:1397..14421622815631.4281933-UTR-L-elsbetiae_contig15476:1397..1442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 1398..1442 +
1691683002.5539167-UTR-L-elsbetiae_contig15476:1397..14421691683002.5539167-UTR-L-elsbetiae_contig15476:1397..1442Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 1398..1442 +
1622815631.4736853-UTR-L-elsbetiae_contig15476:2880..36951622815631.4736853-UTR-L-elsbetiae_contig15476:2880..3695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 2881..3695 +
1691683002.5902622-UTR-L-elsbetiae_contig15476:2880..36951691683002.5902622-UTR-L-elsbetiae_contig15476:2880..3695Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15476 2881..3695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4394324-CDS-L-elsbetiae_contig15476:1442..16701622815631.4394324-CDS-L-elsbetiae_contig15476:1442..1670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 1443..1670 +
1691683002.5629995-CDS-L-elsbetiae_contig15476:1442..16701691683002.5629995-CDS-L-elsbetiae_contig15476:1442..1670Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 1443..1670 +
1622815631.4511557-CDS-L-elsbetiae_contig15476:2228..23901622815631.4511557-CDS-L-elsbetiae_contig15476:2228..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 2229..2390 +
1691683002.573165-CDS-L-elsbetiae_contig15476:2228..23901691683002.573165-CDS-L-elsbetiae_contig15476:2228..2390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 2229..2390 +
1622815631.4629538-CDS-L-elsbetiae_contig15476:2811..28801622815631.4629538-CDS-L-elsbetiae_contig15476:2811..2880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 2812..2880 +
1691683002.581263-CDS-L-elsbetiae_contig15476:2811..28801691683002.581263-CDS-L-elsbetiae_contig15476:2811..2880Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15476 2812..2880 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15476.3856.1

>prot_L-elsbetiae_contig15476.3856.1 ID=prot_L-elsbetiae_contig15476.3856.1|Name=mRNA_L-elsbetiae_contig15476.3856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
MIVVQETRGEPDGLIVSHLPLGPTAFFTLSNCVLRHDIADRGTVSEVYPH
LIMDKFSTALGQRVADVLKYLFPVPKADSHRVMTFSNEADVVFFRHHMYE
KRGGKEVVLHEVGPRFEMQLYQLRLGTLDQDEAENEWVMRPYMNSSKKRR
FL*
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mRNA from alignment at L-elsbetiae_contig15476:578..3695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15476.3856.1 ID=mRNA_L-elsbetiae_contig15476.3856.1|Name=mRNA_L-elsbetiae_contig15476.3856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3118bp|location=Sequence derived from alignment at L-elsbetiae_contig15476:578..3695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTAGAGCCAGGAGGACCACATTTTGCTGACATAAATACGCCAGGAGTA GTTGGTATTTCCGTCACGCGGTAAGCGACTTACGTCACCCATCCGCCGGT GTTCATTCACATTTGGGGATATGTATTCCAACAGGCTGCCTGTTGGCTGC CAAATGTGTGAAGGAGTCCCCTCACCCTGACTCCCTTCTGATGGCTCCAG GTGGAGTTGGAGGACGACGAGACATCGAAACCCAGGAGCTCCATCGACGA CGAGTATGCGCAAGCTGGCGTCCGCGACCCGAAAGTGTGCGTTACCACAA GCCGGGATCCATCCAGCAGACTTAAGCAGTTTGCGAAAGAGCTCAAGCTG GTCGTGCCCAACGCACAGCGAATAAACAGAGGAAACCACAAGGTACGGGC TAGTTGTCCTTCTGTCCGAGCCGTTTATTTCGGCCAGTCGTCGTTCTTGT TCGGCACCGCGGCTGCGCGATCGGAATAGCGGCTACATCGGAACTAGCGG TGATGTTCCTGTGCGCGGTTGGTGTCTCTCCTCGCCTTTTCTAGAGACTT GCTGCTACAACAGTAGATGTGATCTTCCTTAAACTCAGGTAAATGGGTAA ATGGGCCAACCTTTTCAACCAACGCACTAACTACGTGGTCCCAAACCTCC CAAGTGAACATGATGTGCGCCTCACCCTGTCTTGCGGTTTCGGGAGAAGT TGACCTGACATCGGAGGCTTCAGTCGGGCCTAGTAGCTGCATAGATTGCC TGGCGAAGATGACTGCTCTATCCTCATCGTGTCATTCTTGTTCGTGTCGG GGTTGGAACGCGTCGCACAGGTTGGTGAACTTGTCGGCGCTTGCCGATCG AGCGAGTTCACCGACATGATCGTGGTGCAAGAAACTCGTGGAGAACCTGA TGGGCTCATCGTGTCTCATCTCCCTCTCGGGCCAACGGCCTTCTTCACCC TGTCGAATTGCGTCCTTCGGCACGACATCGCGGACCGTGGCACCGTCAGC GAAGTTTACCCGCATCTCATAATGGACAAGTTTTCAACAGCTCTCGGACA AAGAGTCGCAGACGTGCTCAAGTACCTTTTTCCAGTTCCGAAGGTGAGAC ATACATACACACTTCGGTAATCGCTTTAAAACAAAGCGTCGATGCGTTTC ATGTCTCCTACCTGAATGTCTGCCACTGCGTACGCTGACTTTTACCACGA AGTATCTACATAGTTTGTAATGCAGCACTAAATACAATACTGGTACAGTC TAAGCGGGTGAGTTTAGTCCGTGCCCGCGATCATGCGTATCGTGTGGGCC CTGCTGTCTCTCTGCACCTGAAGCTTAACATCGCAATTCGCCTCCTCCCC CCATGTTGATATACTTCGGAATACAAGTGTTGTTTTTTTGCACTTCAGCT CAGTCAAAGGCTTTCACTGCATGCGCGTTGCATGTTCCGTAGACTCTTGA AGTGTTTCGGCACACACCACGTAGTGTTCCTATTCACTTTGTGCGTTGGA CTGCGGTAAACATGTCCAGCATACGTTTCAATGCACCAACAGGTCATACG AAAACTATCCGCAGTGACCATCCAGTCCAGGCAGTGCACCAACGCCTGAT ATATGTATGCATCTCACGATGGATTCTCGTTCAATGTCACGTCATGCGCA GGCCGACTCGCACCGAGTCATGACGTTTTCCAACGAAGCGGATGTTGTGT TTTTCCGGCATCACATGTACGAGAAGCGGGGTGGAAAGGAAGTGGTGTTG CATGAAGTGGGGCCGCGGTTTGAAATGCAACTGTACCAACTCCGTCTGGG CACCCTTGATCAGGTCAGAATCGGTGTGCAGGGTGTGTGGTGGGGGGGCC ACATACTTCCATACATACACACCACCAGTGGAAATGCAAAAAATCTGTTT CGCAACTGGTCAGGGTTGTGTGCTGCCTTCGAGTTGCACTCAAAAGTATA ACTTCGACATCAAAAATACATAAACCTGACTTGTAGTTGCAAAGATGCAA GTTCGCCGGACAAACTTGACACGAGAATCGGGCGAAGAACGTCGTTGCCT TTATCCTCACAGCACGCAACGAAAAACGCGCCGCTTCCACAATTCGGGCG TTAGGTGTGTCTTGGAAAATGGTGCTCGTAGCGGAAGCAAGATGAACTTT TCATCGCGTTTTGTGACGAAGGCAACACTTGACTTGACTTGCACCCTCTT TGTCGATCCACACTAACGTTGAAACCTCGTGCAGGACGAAGCCGAGAACG AGTGGGTGATGAGGCCGTACATGAACTCTTCGAAGAAAAGGCGGTTCTTG TAGCCATTTCCGAGGCGTGACACTGATGTCAGGTGGCTAGGAATGCTTGA AGTCTTGAGCAAGCGCCAGGCTGACACCCAGTTGGAAGGCGGGCAAGTGT CGACACCCGCGAGCGAACAGAGCCTTTCTTCGCTCGTCGTGTTCGGCTGA AGAAACGAGGGAACTAGAGAACTCAAAGTAGACAGTGCCAAACGAAGCGG GTGATGAGGATCGTTGTTCTCTATTAATTTTGGCTCAACAATTGTCCGGT GATTTTTGCTCCTTGGGCTCTCTCTCCCTCGTCGCGTCGTAAATCGGATA CTTGAAATTTTGAATTTTTAGTTTTTTTTTTCCAACGATAGTTGAGTTTT AGAAAAAAACTGTCTAGATGGATGAATTACTTCCTGTGCGTGTGTGCAAG TTAAATAACACCCCGGCTACTGCGACCCATCTTTTCTCCATTTTCCAATC GTGCCGGGATGTAGCGTCATTTCAACCTCTTTTCGGGCGATAACGGAGCG GGGCCTTGACGATATGGGAAAATGATCAGGTGCACAACTTTGTTCAAATA TAGTTCGTCAACCTGCGCACCTGTTGCTTCCCCGTTGCTCGTGCCCGCGT CGCCGAGTTGACTGCCGATATGTTTGTGCGTTCGTGCGTTCGTTCGTGCC CGTATTTGCGCACATTTTCACCGATTGAGAAGCCGTTTTTTGGGGACAGA TTAGAGTACGGAAAGTTGCACAGGCTGCAGCATATTTAGCGCAAACCTTT AACGCCGGCCATTTACCAAACCAAAGCCTAGTTCCGTCGTTCACGCGCAA TTTGTCCTGTAACACCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15476:578..3695+

>mRNA_L-elsbetiae_contig15476.3856.1 ID=mRNA_L-elsbetiae_contig15476.3856.1|Name=mRNA_L-elsbetiae_contig15476.3856.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig15476:578..3695+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCGTGGTGCAAGAAACTCGTGGAGAACCTGATGGGCTCATCGTGTC
TCATCTCCCTCTCGGGCCAACGGCCTTCTTCACCCTGTCGAATTGCGTCC
TTCGGCACGACATCGCGGACCGTGGCACCGTCAGCGAAGTTTACCCGCAT
CTCATAATGGACAAGTTTTCAACAGCTCTCGGACAAAGAGTCGCAGACGT
GCTCAAGTACCTTTTTCCAGTTCCGAAGATGATCGTGGTGCAAGAAACTC
GTGGAGAACCTGATGGGCTCATCGTGTCTCATCTCCCTCTCGGGCCAACG
GCCTTCTTCACCCTGTCGAATTGCGTCCTTCGGCACGACATCGCGGACCG
TGGCACCGTCAGCGAAGTTTACCCGCATCTCATAATGGACAAGTTTTCAA
CAGCTCTCGGACAAAGAGTCGCAGACGTGCTCAAGTACCTTTTTCCAGTT
CCGAAGGCCGACTCGCACCGAGTCATGACGTTTTCCAACGAAGCGGATGT
TGTGTTTTTCCGGCATCACATGTACGAGAAGCGGGGTGGAAAGGAAGTGG
TGTTGCATGAAGTGGGGCCGCGGTTTGAAATGCAACTGTACCAACTCCGT
CTGGGCACCCTTGATCAGGCCGACTCGCACCGAGTCATGACGTTTTCCAA
CGAAGCGGATGTTGTGTTTTTCCGGCATCACATGTACGAGAAGCGGGGTG
GAAAGGAAGTGGTGTTGCATGAAGTGGGGCCGCGGTTTGAAATGCAACTG
TACCAACTCCGTCTGGGCACCCTTGATCAGGACGAAGCCGAGAACGAGTG
GGTGATGAGGCCGTACATGAACTCTTCGAAGAAAAGGCGGTTCTTGTAGG
ACGAAGCCGAGAACGAGTGGGTGATGAGGCCGTACATGAACTCTTCGAAG
AAAAGGCGGTTCTTGTAG
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