prot_L-elsbetiae_contig15.3585.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig15.3585.1
Unique Name	prot_L-elsbetiae_contig15.3585.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	176

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 1.210e-94
Identity = 149/174 (85.63%), Postives = 158/174 (90.80%), Query Frame = 0

Query:    1 MAGMVGTSSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNEADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERRSKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFVFGLVPRCSPS 174
            MAGMVG S HLPSV AVSVD LFLVVM+C LVEVVAGF MW+TSRVTR EA ++SQRQTLR GVAKTNYT+TFVENSKLKRLLLK EKDLER Q+A++RR KS  KAVRA RVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMF+FGLVPR SPS
Sbjct:    1 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPS 174

[Close]

BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.080e-19
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 0

Query:    8 SSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNEADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERRSKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGS----VGALSIVAMFVFGLVPRCSPS 174
            S+ LP+V A++   L L ++VC +VE+++G A     R T+ E         L+  + KTNY   FVENSKL+R L+KVEK+LER +  +  R     +  R  R+  YG++V   WG+  I F+P Y+ P     A++GG   G+    V    +V +F +GL  R   S
Sbjct:    4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTPLG---AVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRFGSS 171

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G9E7_ECTSI	1.210e-94	85.63	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YKR9_9STRA	2.080e-19	35.67	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..96
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 110..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 42..109
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 169..175
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 130..148
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 21..41
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 149..168
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..20
None	No IPR available	TMHMM	TMhelix		coord: 15..37
None	No IPR available	TMHMM	TMhelix		coord: 145..167
None	No IPR available	TMHMM	TMhelix		coord: 108..130

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig15	contig	L-elsbetiae_contig15:27455..31760 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig15.3585.1	mRNA_L-elsbetiae_contig15.3585.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig15 27455..32941 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig15.3585.1 ID=prot_L-elsbetiae_contig15.3585.1|Name=mRNA_L-elsbetiae_contig15.3585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MAGMVGTSSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNE
ADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERR
SKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRA
AGSVGALSIVAMFVFGLVPRCSPSG*