mRNA_L-elsbetiae_contig15.3585.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3585.1
Unique NamemRNA_L-elsbetiae_contig15.3585.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Match: D7G9E7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9E7_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 3.200e-89
Identity = 149/174 (85.63%), Postives = 158/174 (90.80%), Query Frame = 1 
Query:    1 MAGMVGTSSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNEADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERRSKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFVFGLVPRCSPS 522
            MAGMVG S HLPSV AVSVD LFLVVM+C LVEVVAGF MW+TSRVTR EA ++SQRQTLR GVAKTNYT+TFVENSKLKRLLLK EKDLER Q+A++RR KS  KAVRA RVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMF+FGLVPR SPS
Sbjct:    1 MAGMVGASPHLPSVMAVSVDTLFLVVMMCSLVEVVAGFVMWKTSRVTRTEAALISQRQTLRTGVAKTNYTATFVENSKLKRLLLKAEKDLERIQSARDRRLKSVAKAVRAVRVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGSVGALSIVAMFLFGLVPRLSPS 174
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BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Match: A0A835YKR9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.730e-17
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 1 
Query:   22 SSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNEADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERRSKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRAAGS----VGALSIVAMFVFGLVPRCSPS 522
            S+ LP+V A++   L L ++VC +VE+++G A     R T+ E         L+  + KTNY   FVENSKL+R L+KVEK+LER +  +  R     +  R  R+  YG++V   WG+  I F+P Y+ P     A++GG   G+    V    +V +F +GL  R   S
Sbjct:    4 SAALPAVLAINPVGLILAILVCVIVELISGIAHAMAGRRTQAEVTYSEDVALLKVEIVKTNYPEKFVENSKLQRQLIKVEKELERLRGERAARRTKVQRWTRWLRLAAYGALVAAHWGQTAIRFTPAYVTPLG---AVAGGPLQGTPQGGVSIAGVVVLFWWGLGGRFGSS 171
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3585.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9E7_ECTSI3.200e-8985.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YKR9_9STRA1.730e-1735.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:27455..32941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_000670.1
Exons4
Model size1709
Cds size528
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3585.1prot_L-elsbetiae_contig15.3585.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 27455..31760 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.3810225-CDS-L-elsbetiae_contig15:27454..275531622815606.3810225-CDS-L-elsbetiae_contig15:27454..27553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 27455..27553 +
1691682987.170172-CDS-L-elsbetiae_contig15:27454..275531691682987.170172-CDS-L-elsbetiae_contig15:27454..27553Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 27455..27553 +
1622815606.3960507-CDS-L-elsbetiae_contig15:28929..290281622815606.3960507-CDS-L-elsbetiae_contig15:28929..29028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 28930..29028 +
1691682987.1800463-CDS-L-elsbetiae_contig15:28929..290281691682987.1800463-CDS-L-elsbetiae_contig15:28929..29028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 28930..29028 +
1622815606.4169238-CDS-L-elsbetiae_contig15:30430..305681622815606.4169238-CDS-L-elsbetiae_contig15:30430..30568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 30431..30568 +
1691682987.1907487-CDS-L-elsbetiae_contig15:30430..305681691682987.1907487-CDS-L-elsbetiae_contig15:30430..30568Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 30431..30568 +
1622815606.4287379-CDS-L-elsbetiae_contig15:31568..317601622815606.4287379-CDS-L-elsbetiae_contig15:31568..31760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 31569..31760 +
1691682987.1995525-CDS-L-elsbetiae_contig15:31568..317601691682987.1995525-CDS-L-elsbetiae_contig15:31568..31760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 31569..31760 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.4420943-UTR-L-elsbetiae_contig15:31760..329411622815606.4420943-UTR-L-elsbetiae_contig15:31760..32941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 31761..32941 +
1691682987.2074869-UTR-L-elsbetiae_contig15:31760..329411691682987.2074869-UTR-L-elsbetiae_contig15:31760..32941Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 31761..32941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3585.1

>prot_L-elsbetiae_contig15.3585.1 ID=prot_L-elsbetiae_contig15.3585.1|Name=mRNA_L-elsbetiae_contig15.3585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=176bp
MAGMVGTSSHLPSVTAVSVDILFLVVMVCFLVEVVAGFAMWRTSRVTRNE
ADMVSQRQTLRAGVAKTNYTSTFVENSKLKRLLLKVEKDLERTQAAKERR
SKSATKAVRAARVCVYGSMVVLMWGRPLISFSPDYLWPSSFSHALSGGRA
AGSVGALSIVAMFVFGLVPRCSPSG*
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mRNA from alignment at L-elsbetiae_contig15:27455..32941+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3585.1 ID=mRNA_L-elsbetiae_contig15.3585.1|Name=mRNA_L-elsbetiae_contig15.3585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5487bp|location=Sequence derived from alignment at L-elsbetiae_contig15:27455..32941+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGGCATGGTGGGCACATCGTCCCACTTGCCGTCCGTAACGGCTGT
GAGCGTCGACATCCTTTTTCTGGTGGTGATGGTGTGCTTTCTTGTGGAGG
TAAGTAAAACATAAGCGTGGCACTGCTGCTGCTGCATGGCATCACGTTTA
TGTATCGAAGTCACACGAGCAAACATTGGTCTGCGGAGTGAAGCTTGGGA
CGAGCTGGTGAGGGAAGGGTATGCCGTGTGTCTACAATAACAGCAGTGTA
GTCGTCCCCATGGAACGACTTTTTTTCAGAGGCCGGACGCAGACCGCTGA
CATTCGGTAGGCGTCTTTATCAAATAAAACGGCCAAAACCCGCGCTTTTT
TTGCGTGTTGGGCAAGAAGCAGCGGGCATCCCAGTCTCCAACCCCGAAGT
CAATAATCCGACGCATGTTTGCACTTCTATGTATGTCTGAGTATGATGCG
AACATGCGAAAACCCTGTGTATCTTGCCGCATAAATATGAGTATCACCGT
GCTGTGCTCAACCCCCACCCCCAGCTCCTTGCTGTTGTGCCGCCTCTCTT
GTGGGGTGACGTTTTGCCTCGCGATTTCATTAGCCCCCCACCCCCCCGCC
TGTCACACCAGCCACACTCCGTGGCCGTGCGGTCTTGGTCGGGCCTCACA
CACGCACACACACACACACACACACACACACCTCTGGACGGGCCTATTTA
ACCCTTCATTTTTCAAAACAAGCCTCCCCCCCTAGGTAAGGCCCACGGTA
TTCTTATTCCGAAACCATTTCTGTTTGCACAGGGTTTGTTGAGGGTTTGA
GTACTCTCATACCAGCTTACACACGCGATCTGCCGCTTGTGTTTTGTGTG
CGAGCGAGCTCCAACTCGACAGCCAGAAGATGCTACAAAAGTTGTTAAAA
GCTTCATATCATGTTGGGGCTTTCGCGAGAAGCATGTGTCGCGAGCATAT
GTACAAACTAAACAGCTCGTAGTGACAGTAGTAGTAGTCTCGCGCCGTTG
TTCCTAGATAACCCACCTCCGCTTTTGACCATCTGGTGTCGCAGCAGCAT
GGGCGCTCTTGAAAGGGGGCGCTGTTTATAAATAGGGGTATTGTTGTTTG
ACGATTCCGAGCATCGGTTCGGTTAGTCAACGAACACAAAAGAGGCGGGT
TCTGGACTACATGCCCAGGTTGTAACGGCGCCGACACCTGCCGACTATAA
AAGCCAAAATCAAACCGTTAGACCAGTCAGCGCATTTGCATTTGCGCTGA
CTGGTCTAATGGTTTGATTTCAGCTTCTATCAAAGTAAGCCGTATTTCAG
CTTCTATACGACGAACAAGCGAGCGCAAGGTGTGTGCGCGCGCGCCCACG
CGTGCGGACGTTGGGCGCTTGCTTGCTTGCACGGCGGGCGCGCGTGAAAA
GTGGCACACTCTCATCGCTCGATCATGCGCGTTGGCCGGCCGACCGGCCG
CGCTTGTGTGTTTTTCTTTCCCCAGGTCGTAGCCGGGTTCGCGATGTGGA
GGACGTCCAGGGTGACCCGAAATGAGGCGGATATGGTGTCGCAGCGCCAG
ACCCTGAGGGCAGGGGTCGCCAAGGTGAGGGTGGCTGGGCGATCCTTGTG
ACCAATCCAGGCTCTCGAGTACGAAAATTGCTTCTATTTTGTATAGATGG
CCTAGGGTCTGTAGGTTACCCCAGGCTGCTTCCTTAGTTTTTGTCTTTGT
GTCAGTTGTCAGTTGTTCTTCTCGGCAGTGTTGGCTTGTATCCCCCTCCG
GCGGACTGCGTGTAGACAAGAAGCTATCTATCTGTCTCTCTCCGGCGGAC
TCGACTATGTGTAGACAATACTCTCTCTCTCTTTCTCTCTCTCTCTCTCT
CTCTCTCTTTCTTGTCGCGCTCCTCCCCCGCCCAAGCACACCGCTGCACG
CTGATCGGTGTGTTGACGGGCGGGCGCCTCACCCCTTGGCTCCGCTGCCG
CGGAGCACAGACCTTTCCCCCCCGTGGCGCACCCACCGCTTGTAGCTTGA
TCGTGTCGACTTGTGTTGGTTTCTGTCTGTCCGGTATAGTACTGCCATGT
ATGGGCGGTGTATGTACATCCGCGCTCTGGTTAAATGGACGCCAGGCTTG
AGGTTGTAGTCAGCCATCGCAGAAAGAGGGATCGTCTCCAACAGGCAGTG
AGCGTGGGGCGGCACCAACAACAATGTTCGCGACTTGGGCTACGACTGCT
GCCGTACGTAGTGTATGTATCACACTCGTCGTTTAGCCGCCCAAACGAGG
ACAGCTGGCGTTTTTTCGTTTTGCGAGCCGGTTCCGAACCTACAGCCCCC
CCCCCCCCCCGGGCGGGGCGTTCCGATCTGCGAAACAGACCAAAACACAG
CATGAAAACAGGCATGAACAGGTTCGCAGAAAAGCAACCAATACCTGCCG
TAAAACGTAACGAAACGGAAGCATTTAGCTCCACAGCAAAAGCGAGCGTG
CTACAGTATTAATAGTAGTAGTACGACATGTACAACTGCTCCACAGACAA
ACAAGCGTTCAACAGCCACCGGTCGCTTTTGGTCGTGAAAACCTTTGCTT
CATCGGACCACGCGCACGGCGACCGATGTCTCGATATGACTCGATGACTC
TCGGTTCTCGATATGACTCGATGACTCTCGGTTCCGTGCCACGTGCGGAA
CTTGTTCGGTACCGCTGTCCTCGTCGGTGTCTGTCCTCTTGGGAGAACTT
TTTCGGAACTTTTTTTCATCAAATGTTCTACAGATGCCACAAGCGAGCGG
TCTACGTCCAACCTTTGGAAAAGGAAAAGTCGTTCCAGGGGGGACTGCCG
TTGTACATACGTATGTATATGTATAGGCACACTATGTAGCCCCTCCCTCA
CCGCCCCAAATTTCTTGCACAAAAAAACCCGCAATCCGAATACATAGCTC
GTTGAGCCCCTTTCCCCTATTCCCTCCCGCGATATCGATCGATTGGCCTT
GCCGCCGCGCGCCGCCCCGCCCGCAGACCAACTACACGTCGACGTTCGTG
GAGAACTCGAAGCTGAAGCGCCTGTTGCTCAAGGTGGAGAAGGACCTCGA
AAGGACTCAGGCCGCGAAGGAAAGGCGGAGCAAGTCCGCGACGAAAGCCG
TCCGAGCTGCCCGGGTAAGTACGTACGTACGCGTACGTACGCGTAGGCCA
GTTCTTACCGTAGGTGACATAAGATAATACACCCCCTGGACCGATTTTCA
AACCTCAAGTACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGGGCGGC
GTTGGAAAGATCTCGTCGAGAGCTGTCCGAAAATGTGGCGTTTGTGGTTA
AAATCGTACTCGTTGCGGAGTAACCAAGCTTTCAATTTCGGTCCAGGGGG
TGTCTTATCTTATGTCACCTACGGTATTTATGTAGTCTGCCGCTTTCTAC
TACTGTCTCAGCTCAGATGCGTCGCGACGGTCGGTGAGAAGCCTGGCTTC
CGGGGCTGGTGAGGTCTCATTAGTGGCACGCGACGGAACGAGCGTGACTG
GCAATTCAGGGGAAAGGCATGAGAACGGTGCTGAGCGCAGCAGCCCCTGA
CGTACATAAAAACAAATTGATTTGTCTGCACACGTGTAAATGCGACAATG
GTAAGTACCCACCTCTCGTTGGTGATTTTTCACGTGCAGGTATTGCCTCC
GTTTCATTTTCGATCGGCATGGGTGCTGGGTTGGTGCGTGTGTATGTAAT
GCTTGAAAAAAACATCCAATGTTCTCCTTGCATGGTTCCCCCCTCCCCAC
CATCGGGTCAGCATGAACACCTCAAATGACGTTTCCGACCGGCGACCTCA
CCATCGAAAGCAATCCGCCCTTAGCAAATAAAACGGAGCTTGGGACTGAC
AACGCCGACGATACTCGTCGGATTGCAATCCAATGCGACAATGGTAAGTA
CCCACCTCTCGTTGTTTCTCCTTAATCTGCGGTACGGTCGGTGTGGATCA
GGCCATGCTAATCACTCTGCAAATAATGCCTTTTTTGTTTTTTATTTGTT
TTAGTGTTCGACTCCTTTTCCTTATTTCCTTCCTTTCCGTTCCTTTTCCC
TCGCTTTTCGCGGTGAATCAATGTACATATATATATACATCTCTTATACG
TTTTGGTGATGCAGGTGTGCGTGTACGGCTCGATGGTGGTGCTCATGTGG
GGACGGCCGTTGATATCCTTCTCGCCAGACTACCTGTGGCCGTCCTCGTT
CTCCCACGCATTGTCGGGGGGTAGAGCGGCGGGAAGCGTGGGGGCATTGT
CCATCGTGGCGATGTTTGTGTTCGGGTTGGTGCCGCGCTGCTCGCCATCG
GGGTAGTGACTGGTGCTGCTGGCTGCTGTGATTGGGACGAGGCTGCCGGT
GTGATTTTCTGTTTTTCTGGCCGTTTCGTGAGTTGTCGGTCGGGGGGCAC
GCGTATGTATGGTATGTTTGGTGGGAGACCCGCCGCGGAGCTAATAGTGC
GAAAAAGATCCGTTGCCACCGTCCGGTCACCGCGCGGGACGTGTTGATTA
TTCTGTGCGTTCCTCCAGCCCATGCGCATTAAAGCCACCCCGAAACCTAG
ACACGTACGTATCGTGTGTGGAGCGAAACTCCGTGAGATGAATAAGGCCT
CGCGACGTGTTGTAGTTCGTGCGTTCCAGCGCATGCGTAAAGCCACCCCG
AAATCTTGACACATACCATAGTATGGAGCGAAACTCCGTGAGACGAAAAA
CATAAGGCCTCGATGTGTTGTAGTTCGTGCGTTCCAGCGCATGCGTGAAG
CCAGCCCGAAATCTTGATACGTATCTACATGGTGTGGAGCGAAAATTCGT
TTGTTTGGGTGGCCTCCGTGGCAGTTGTATAGAGCGAACGAGCCCCACAC
AGGACTCAGAACCCTCGCTCCCGGCGATTCTTTGCCGAGTTGGACCTTCA
ACCATTGTATTTAGCCGCGGAGCAATATTTTTGGCGGCCGCAATACGGTA
CGGTGCCTAGGTACCTAGTACGTGTAAATGGCCACTTCAAAGTAATAAGG
AACGTAACAGACCAGCGGGAGACCTGGTGACGCCATCGCGGGGTCAAACC
TAGGATAGTTGAATCAATTCATACCATACATCTGTGTGACCACGGTTCAG
TACTCTGGCAAGATGTCCTCGTGACGGGGAGCCCATCGAGTACTGGAAAT
AAACGTGAAGGAAAAAACAAAAATCGACGAAGTAGTTTGTGACTTGGACA
CACCGAAACACCTCTCGAATGTGTAAATACGTACAAGATCACCCTTCGGA
GCGAGCTCATGAGAGCACAGGGGATGGGGGTGATGCAAGACGAAAGAAAA
AAGAACCCAGATCTTTGAACCAAAGATTCTGAACTCGAACGCCACGTTAT
AGATCAGACGTAACAGCTGCCCTCCTAAGCACAGCAACAGCGCCAACCGG
GTGCTTCTGTGTGGGCGCTCCGCCCTTGATCAACACGCTCCGCCTTTGTC
AACACAGCTGTGCAGGTCAACACAGCTGCGCAGGTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:27455..32941+

>mRNA_L-elsbetiae_contig15.3585.1 ID=mRNA_L-elsbetiae_contig15.3585.1|Name=mRNA_L-elsbetiae_contig15.3585.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1056bp|location=Sequence derived from alignment at L-elsbetiae_contig15:27455..32941+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGGCATGGTGGGCACATCGTCCCACTTGCCGTCCGTAACGGCTGT
GAGCGTCGACATCCTTTTTCTGGTGGTGATGGTGTGCTTTCTTGTGGAGA
TGGCAGGCATGGTGGGCACATCGTCCCACTTGCCGTCCGTAACGGCTGTG
AGCGTCGACATCCTTTTTCTGGTGGTGATGGTGTGCTTTCTTGTGGAGGT
CGTAGCCGGGTTCGCGATGTGGAGGACGTCCAGGGTGACCCGAAATGAGG
CGGATATGGTGTCGCAGCGCCAGACCCTGAGGGCAGGGGTCGCCAAGGTC
GTAGCCGGGTTCGCGATGTGGAGGACGTCCAGGGTGACCCGAAATGAGGC
GGATATGGTGTCGCAGCGCCAGACCCTGAGGGCAGGGGTCGCCAAGACCA
ACTACACGTCGACGTTCGTGGAGAACTCGAAGCTGAAGCGCCTGTTGCTC
AAGGTGGAGAAGGACCTCGAAAGGACTCAGGCCGCGAAGGAAAGGCGGAG
CAAGTCCGCGACGAAAGCCGTCCGAGCTGCCCGGACCAACTACACGTCGA
CGTTCGTGGAGAACTCGAAGCTGAAGCGCCTGTTGCTCAAGGTGGAGAAG
GACCTCGAAAGGACTCAGGCCGCGAAGGAAAGGCGGAGCAAGTCCGCGAC
GAAAGCCGTCCGAGCTGCCCGGGTGTGCGTGTACGGCTCGATGGTGGTGC
TCATGTGGGGACGGCCGTTGATATCCTTCTCGCCAGACTACCTGTGGCCG
TCCTCGTTCTCCCACGCATTGTCGGGGGGTAGAGCGGCGGGAAGCGTGGG
GGCATTGTCCATCGTGGCGATGTTTGTGTTCGGGTTGGTGCCGCGCTGCT
CGCCATCGGGGTAGGTGTGCGTGTACGGCTCGATGGTGGTGCTCATGTGG
GGACGGCCGTTGATATCCTTCTCGCCAGACTACCTGTGGCCGTCCTCGTT
CTCCCACGCATTGTCGGGGGGTAGAGCGGCGGGAAGCGTGGGGGCATTGT
CCATCGTGGCGATGTTTGTGTTCGGGTTGGTGCCGCGCTGCTCGCCATCG
GGGTAG
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